PMC Links for GEO Profiles (Select 19991848) - PMC

Select item 94896981.

An anti-inflammatory activation sequence governs macrophage transcriptional dynamics during tissue injury in zebrafish

Nicolas Denans, Nhung T. T. Tran, Madeleine E. Swall, Daniel C. Diaz, Jillian Blanck, Tatjana Piotrowski

Nat Commun. 2022; 13: 5356. Published online 2022 Sep 20. doi: 10.1038/s41467-022-33015-3

PMCID:: PMC9489698

Select item 74812232.

Transgenerational inheritance of impaired larval T cell development in zebrafish

Norimasa Iwanami, Divine-Fondzenyuy Lawir, Katarzyna Sikora, Connor O´Meara, Kohei Takeshita, Michael Schorpp, Thomas Boehm

Nat Commun. 2020; 11: 4505. Published online 2020 Sep 9. doi: 10.1038/s41467-020-18289-9

PMCID:: PMC7481223

Abstract Article PDF–1.9M

Select item 67876013.

Pectoral Fin Anomalies in tbx5a Knockdown Zebrafish Embryos Related to the Cascade Effect of N-Cadherin and Extracellular Matrix Formation

Jenn-Kan Lu, Tzu-Chun Tsai, Hsinyu Lee, Kai Hsia, Chih-Hsun Lin, Jen-Her Lu

J Dev Biol. 2019 Sep; 7(3): 15. Published online 2019 Jul 12. doi: 10.3390/jdb7030015

PMCID:: PMC6787601

Abstract Article PDF–2.6M

Select item 57584934.

Evolutionary and Expression Analyses Show Co-option of khdrbs Genes for Origin of Vertebrate Brain

Su Wang, Qingyun Yang, Ziyue Wang, Shuoqi Feng, Hongyan Li, Dongrui Ji, Shicui Zhang

Front Genet. 2017; 8: 225. Published online 2018 Jan 4. doi: 10.3389/fgene.2017.00225

PMCID:: PMC5758493

Abstract Article PDF–7.0M

Select item 56264065.

Dissecting hematopoietic and renal cell heterogeneity in adult zebrafish at single-cell resolution using RNA sequencing

Qin Tang, Sowmya Iyer, Riadh Lobbardi, John C. Moore, Huidong Chen, Caleb Lareau, Christine Hebert, McKenzie L. Shaw, Cyril Neftel, Mario L. Suva, Craig J. Ceol, Andre Bernards, Martin Aryee, Luca Pinello, Iain A. Drummond, David M. Langenau

J Exp Med. 2017 Oct 2; 214(10): 2875–2887. doi: 10.1084/jem.20170976

PMCID:: PMC5626406

Abstract Article PDF–2.2M

Select item 55334576.

An ancient neurotrophin receptor code; a single Runx/Cbfβ complex determines somatosensory neuron fate specification in zebrafish

Philia Gau, Andrew Curtright, Logan Condon, David W. Raible, Ajay Dhaka

PLoS Genet. 2017 Jul; 13(7): e1006884. Published online 2017 Jul 14. doi: 10.1371/journal.pgen.1006884

PMCID:: PMC5533457

Abstract Article PDF–58M

Select item 50733577.

CD4-Transgenic Zebrafish Reveal Tissue-Resident Th2- and Regulatory T Cell–like Populations and Diverse Mononuclear Phagocytes

Christopher T. Dee, Raghavendar T. Nagaraju, Emmanouil I. Athanasiadis, Caroline Gray, Laura Fernandez del Ama, Simon A. Johnston, Christopher J. Secombes, Ana Cvejic, Adam F. L. Hurlstone

J Immunol. 2016 Nov 1; 197(9): 3520–3530. Published online 2016 Sep 30. doi: 10.4049/jimmunol.1600959

PMCID:: PMC5073357

Abstract Article PDF–1.6M

Select item 49280908.

Transcriptome comparison reveals a genetic network regulating the lower temperature limit in fish

Peng Hu, Mingli Liu, Yimeng Liu, Jinfeng Wang, Dong Zhang, Hongbo Niu, Shouwen Jiang, Jian Wang, Dongsheng Zhang, Bingshe Han, Qianghua Xu, Liangbiao Chen

Sci Rep. 2016; 6: 28952. Published online 2016 Jun 30. doi: 10.1038/srep28952

PMCID:: PMC4928090

Abstract Article PDF–1.7M

Select item 48707329.

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database

Jeremy Pasquier, Cédric Cabau, Thaovi Nguyen, Elodie Jouanno, Dany Severac, Ingo Braasch, Laurent Journot, Pierre Pontarotti, Christophe Klopp, John H. Postlethwait, Yann Guiguen, Julien Bobe

BMC Genomics. 2016; 17: 368. Published online 2016 May 18. doi: 10.1186/s12864-016-2709-z

PMCID:: PMC4870732

Abstract Article PDF–1.8M

Select item 463413710.

RFX transcription factors are essential for hearing in mice

Ran Elkon, Beatrice Milon, Laura Morrison, Manan Shah, Sarath Vijayakumar, Manoj Racherla, Carmen C. Leitch, Lorna Silipino, Shadan Hadi, Michèle Weiss-Gayet, Emmanuèle Barras, Christoph D. Schmid, Aouatef Ait-Lounis, Ashley Barnes, Yang Song, David J. Eisenman, Efrat Eliyahu, Gregory I. Frolenkov, Scott E. Strome, Bénédicte Durand, Norann A. Zaghloul, Sherri M. Jones, Walter Reith, Ronna Hertzano

Nat Commun. 2015; 6: 8549. Published online 2015 Oct 15. doi: 10.1038/ncomms9549

PMCID:: PMC4634137

Abstract Article PDF–5.5M

Select item 415344811.

Spinal neurons require Islet1 for subtype-specific differentiation of electrical excitability

Rosa L Moreno, Angeles B Ribera

Neural Dev. 2014; 9: 19. Published online 2014 Aug 22. doi: 10.1186/1749-8104-9-19

PMCID:: PMC4153448

Abstract Article PDF–1.6M

Select item 397484112.

Runx Family Genes in a Cartilaginous Fish, the Elephant Shark (Callorhinchus milii)

Giselle Sek Suan Nah, Zhi Wei Lim, Boon-Hui Tay, Motomi Osato, Byrappa Venkatesh

PLoS One. 2014; 9(4): e93816. Published online 2014 Apr 3. doi: 10.1371/journal.pone.0093816

PMCID:: PMC3974841

Abstract Article PDF–2.0M

Select item 352907713.

Foxn1 maintains thymic epithelial cells to support T-cell development via mcm2 in zebrafish

Dongyuan Ma, Lu Wang, Sifeng Wang, Ya Gao, Yonglong Wei, Feng Liu

Proc Natl Acad Sci U S A. 2012 Dec 18; 109(51): 21040–21045. Published online 2012 Dec 3. doi: 10.1073/pnas.1217021110

PMCID:: PMC3529077

Abstract Article PDF–919K

Select item 350794714.

RUNX3, EGR1 and SOX9B Form a Regulatory Cascade Required to Modulate BMP-Signaling during Cranial Cartilage Development in Zebrafish

Julia Dalcq, Vincent Pasque, Aurélie Ghaye, Arnaud Larbuisson, Patrick Motte, Joseph A. Martial, Marc Muller

PLoS One. 2012; 7(11): e50140. Published online 2012 Nov 27. doi: 10.1371/journal.pone.0050140

PMCID:: PMC3507947

Abstract Article PDF–13M

Select item 337027315.

RAD21 Mutations Cause a Human Cohesinopathy

Matthew A. Deardorff, Jonathan J. Wilde, Melanie Albrecht, Emma Dickinson, Stephanie Tennstedt, Diana Braunholz, Maren Mönnich, Yuqian Yan, Weizhen Xu, María Concepcion Gil-Rodríguez, Dinah Clark, Hakon Hakonarson, Sara Halbach, Laura Daniela Michelis, Abhinav Rampuria, Eva Rossier, Stephanie Spranger, Lionel Van Maldergem, Sally Ann Lynch, Gabriele Gillessen-Kaesbach, Hermann-Josef Lüdecke, Robert G. Ramsay, Michael J. McKay, Ian D. Krantz, Huiling Xu, Julia A. Horsfield, Frank J. Kaiser

Am J Hum Genet. 2012 Jun 8; 90(6): 1014–1027. doi: 10.1016/j.ajhg.2012.04.019

PMCID:: PMC3370273

Abstract Article PDF–1.0M

Select item 317805916.

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas

Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042

PMCID:: PMC3178059

Abstract Article PDF–1.0M

Select item 311933717.

prdm1a regulates sox10 and islet1 in the development of neural crest and Rohon-Beard sensory neurons

Eugenia Olesnicky, Laura Hernandez-Lagunas, Kristin Bruk Artinger

Genesis. Author manuscript; available in PMC 2011 Nov 2.

Published in final edited form as: Genesis. 2010 Nov; 48(11): 656–666. Published online 2010 Nov 2. doi: 10.1002/dvg.20673

PMCID:: PMC3119337

Abstract Article PDF–3.5M

Select item 287474818.

Chromatin signature of embryonic pluripotency is established during genome activation

Nadine L. Vastenhouw, Yong Zhang, Ian G. Woods, Farhad Imam, Aviv Regev, X. Shirley Liu, John Rinn, Alexander F. Schier

Nature. Author manuscript; available in PMC 2011 Apr 8.

Published in final edited form as: Nature. 2010 Apr 8; 464(7290): 922–926. Published online 2010 Mar 24. doi: 10.1038/nature08866

PMCID:: PMC2874748

Abstract Article PDF–922K

Select item 119954619.

The zebrafish gene map defines ancestral vertebrate chromosomes

Ian G. Woods, Catherine Wilson, Brian Friedlander, Patricia Chang, Daengnoy K. Reyes, Rebecca Nix, Peter D. Kelly, Felicia Chu, John H. Postlethwait, William S. Talbot

Genome Res. 2005 Sep; 15(9): 1307–1314. doi: 10.1101/gr.4134305

PMCID:: PMC1199546

Abstract Article PDF–595K

Select item 13924120.

Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences

Mammalian Gene Collection (MGC) Program Team

Proc Natl Acad Sci U S A. 2002 Dec 24; 99(26): 16899–16903. Published online 2002 Dec 11. doi: 10.1073/pnas.242603899

PMCID:: PMC139241

Abstract Article PDF–118K

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