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Items: 19

1.
CCAR-1 works together with the U2AF large subunit UAF-1 to regulate alternative splicing
Doreen I. Lugano, Lindsey N. Barrett, Dale Chaput, Margaret A. Park, Sandy D. Westerheide
RNA Biol. 2024; 21(1): 1–11. Published online 2023 Dec 21. doi: 10.1080/15476286.2023.2289707
PMCID:
PMC10761121
AbstractArticlePDF–2.5M
2.
Depletion of endogenously biotinylated carboxylases enhances the sensitivity of TurboID-mediated proximity labeling in Caenorhabditis elegans
Murat Artan, Markus Hartl, Weiqiang Chen, Mario de Bono
J Biol Chem. 2022 Sep; 298(9): 102343. Published online 2022 Aug 3. doi: 10.1016/j.jbc.2022.102343
PMCID:
PMC9437848
AbstractArticlePDF–2.0M
3.
Functional identification of microRNA-centered complexes in C. elegans
Shilpa Hebbar, Ganesh Panzade, Ajay A. Vashisht, James A. Wohlschlegel, Isana Veksler-Lublinsky, Anna Y. Zinovyeva
Sci Rep. 2022; 12: 7133. Published online 2022 May 3. doi: 10.1038/s41598-022-10771-2
PMCID:
PMC9065084
AbstractArticlePDF–2.2M
4.
Interactome analysis of Caenorhabditis elegans synapses by TurboID-based proximity labeling
Murat Artan, Stephen Barratt, Sean M. Flynn, Farida Begum, Mark Skehel, Armel Nicolas, Mario de Bono
J Biol Chem. 2021 Sep; 297(3): 101094. Published online 2021 Aug 18. doi: 10.1016/j.jbc.2021.101094
Correction in:
J Biol Chem. 2022 Jun; 298(6): 102081.
PMCID:
PMC8446793
AbstractArticlePDF–1.6M
5.
Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules
Patricia Giselle Cipriani, Olivia Bay, John Zinno, Michelle Gutwein, Hin Hark Gan, Vinay K Mayya, George Chung, Jia-Xuan Chen, Hala Fahs, Yu Guan, Thomas F Duchaine, Matthias Selbach, Fabio Piano, Kristin C Gunsalus
eLife. 2021; 10: e60833. Published online 2021 Jul 5. doi: 10.7554/eLife.60833
PMCID:
PMC8331183
AbstractArticlePDF–8.5M
6.
EPIC: Software Toolkit for Elution Profile-Based Inference of Protein Complexes
Lucas ZhongMing Hu, Florian Goebels, June H. Tan, Eric Wolf, Uros Kuzmanov, Cuihong Wan, Sadhna Phanse, Changjiang Xu, Mike Schertzberg, Andrew G. Fraser, Gary D. Bader, Andrew Emili
Nat Methods. Author manuscript; available in PMC 2021 Mar 26.
Published in final edited form as: Nat Methods. 2019 Aug; 16(8): 737–742. Published online 2019 Jul 15. doi: 10.1038/s41592-019-0461-4
PMCID:
PMC7995176
AbstractArticlePDF–1.0M
7.
Reduction of mRNA export unmasks different tissue sensitivities to low mRNA levels during Caenorhabditis elegans development
Angelina Zheleva, Eva Gómez-Orte, Beatriz Sáenz-Narciso, Begoña Ezcurra, Henok Kassahun, María de Toro, Antonio Miranda-Vizuete, Ralf Schnabel, Hilde Nilsen, Juan Cabello
PLoS Genet. 2019 Sep; 15(9): e1008338. Published online 2019 Sep 16. doi: 10.1371/journal.pgen.1008338
PMCID:
PMC6762213
AbstractArticlePDF–3.4M
8.
Global Proteomic Response of Caenorhabditis elegans Against PemKSa Toxin
Dilawar Ahmad Mir, Krishnaswamy Balamurugan
Front Cell Infect Microbiol. 2019; 9: 172. Published online 2019 May 31. doi: 10.3389/fcimb.2019.00172
PMCID:
PMC6555269
AbstractArticlePDF–3.7M
9.
OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes
Woojin Kim, Ryan S. Underwood, Iva Greenwald, Daniel D. Shaye
Genetics. 2018 Oct; 210(2): 445–461. Published online 2018 Aug 17. doi: 10.1534/genetics.118.301307
PMCID:
PMC6216590
AbstractArticlePDF–1.4M
10.
VIG-1 is required for maintenance of genome stability in Caenorhabditis elegans
Bala Murali Krishna Vasamsetti, Yang-Seo Park, Nam Jeong Cho
Anim Cells Syst (Seoul) 2018; 22(3): 197–204. Published online 2018 May 24. doi: 10.1080/19768354.2018.1476410
PMCID:
PMC6138327
AbstractArticlePDF–1.4M
11.
TEG-1 CD2BP2 controls miRNA levels by regulating miRISC stability in C. elegans and human cells
Chris Wang, Pratyush Gupta, Lucile Fressigne, Gabriel D. Bossé, Xin Wang, Martin J. Simard, Dave Hansen
Nucleic Acids Res. 2017 Feb 17; 45(3): 1488–1500. Published online 2016 Sep 19. doi: 10.1093/nar/gkw836
PMCID:
PMC5388422
AbstractArticlePDF–5.3M
12.
RNA-binding protein GLD-1/quaking genetically interacts with the mir-35 and the let-7 miRNA pathways in Caenorhabditis elegans
Alper Akay, Ashley Craig, Nicolas Lehrbach, Mark Larance, Ehsan Pourkarimi, Jane E. Wright, Angus Lamond, Eric Miska, Anton Gartner
Open Biol. 2013 Nov; 3(11): 130151. doi: 10.1098/rsob.130151
PMCID:
PMC3843822
AbstractArticlePDF–1.1M
13.
SH3 interactome conserves general function over specific form
Xiaofeng Xin, David Gfeller, Jackie Cheng, Raffi Tonikian, Lin Sun, Ailan Guo, Lianet Lopez, Alevtina Pavlenco, Adenrele Akintobi, Yingnan Zhang, Jean-François Rual, Bridget Currell, Somasekar Seshagiri, Tong Hao, Xinping Yang, Yun A Shen, Kourosh Salehi-Ashtiani, Jingjing Li, Aaron T Cheng, Dryden Bouamalay, Adrien Lugari, David E Hill, Mark L Grimes, David G Drubin, Barth D Grant, Marc Vidal, Charles Boone, Sachdev S Sidhu, Gary D Bader
Mol Syst Biol. 2013; 9: 652. Published online 2013 Apr 2. doi: 10.1038/msb.2013.9
PMCID:
PMC3658277
AbstractArticlePDF–2.3M
14.
The Caenorhabditis elegans RDE-10/RDE-11 complex regulates RNAi by promoting secondary siRNA amplification
Chi Zhang, Taiowa A. Montgomery, Sylvia E. J. Fischer, Susana M. D. A. Garcia, Christian G. Riedel, Noah Fahlgren, Christopher M. Sullivan, James C. Carrington, Gary Ruvkun
Curr Biol. Author manuscript; available in PMC 2013 May 22.
Published in final edited form as: Curr Biol. 2012 May 22; 22(10): 881–890. Published online 2012 Apr 26. doi: 10.1016/j.cub.2012.04.011
PMCID:
PMC3371361
AbstractArticlePDF–1.8M
15.
OrthoList: A Compendium of C. elegans Genes with Human Orthologs
Daniel D. Shaye, Iva Greenwald
PLoS One. 2011; 6(5): e20085. Published online 2011 May 25. doi: 10.1371/journal.pone.0020085
Correction in:
PLoS One. 2014; 9(1): 10.1371/annotation/f5ffb738-a176-4a43-b0e0-249cdea45fe0.
PMCID:
PMC3102077
AbstractArticlePDF–530K
16.
Using RNA Interference to Identify Specific Modifiers of a Temperature-Sensitive, Embryonic-Lethal Mutation in the Caenorhabditis elegans Ubiquitin-Like Nedd8 Protein Modification Pathway E1-Activating Gene rfl-1
Marc Dorfman, José-Eduardo Gomes, Sean O'Rourke, Bruce Bowerman
Genetics. 2009 Aug; 182(4): 1035–1049. doi: 10.1534/genetics.109.104885
PMCID:
PMC2728846
AbstractArticlePDF–2.8M
17.
A novel biochemical method to identify target genes of individual microRNAs: Identification of a new Caenorhabditis elegans let-7 target
Yoshiki Andachi
RNA. 2008 Nov; 14(11): 2440–2451. doi: 10.1261/rna.1139508
PMCID:
PMC2578851
AbstractArticlePDF–931K
18.
Dynein Modifiers in C. elegans: Light Chains Suppress Conditional Heavy Chain Mutants
Sean M O'Rourke, Marc D Dorfman, J. Clayton Carter, Bruce Bowerman
PLoS Genet. 2007 Aug; 3(8): e128. Published online 2007 Aug 3. doi: 10.1371/journal.pgen.0030128
PMCID:
PMC1937013
AbstractArticlePDF–2.0M
19.
A Map of the Interactome Network of the Metazoan C. elegans
Siming Li, Christopher M. Armstrong, Nicolas Bertin, Hui Ge, Stuart Milstein, Mike Boxem, Pierre-Olivier Vidalain, Jing-Dong J. Han, Alban Chesneau, Tong Hao, Debra S. Goldberg, Ning Li, Monica Martinez, Jean-François Rual, Philippe Lamesch, Lai Xu, Muneesh Tewari, Sharyl L. Wong, Lan V. Zhang, Gabriel F. Berriz, Laurent Jacotot, Philippe Vaglio, Jérôme Reboul, Tomoko Hirozane-Kishikawa, Qianru Li, Harrison W. Gabel, Ahmed Elewa, Bridget Baumgartner, Debra J. Rose, Haiyuan Yu, Stephanie Bosak, Reynaldo Sequerra, Andrew Fraser, Susan E. Mango, William M. Saxton, Susan Strome, Sander van den Heuvel, Fabio Piano, Jean Vandenhaute, Claude Sardet, Mark Gerstein, Lynn Doucette-Stamm, Kristin C. Gunsalus, J. Wade Harper, Michael E. Cusick, Frederick P. Roth, David E. Hill, Marc Vidal
Science. Author manuscript; available in PMC 2006 Dec 14.
Published in final edited form as: Science. 2004 Jan 23; 303(5657): 540–543. Published online 2004 Jan 2. doi: 10.1126/science.1091403
PMCID:
PMC1698949
AbstractArticlePDF–1.4M

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