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Items: 20

1.
Structural characterization of ligand binding and pH-specific enzymatic activity of mouse Acidic Mammalian Chitinase
Roberto Efraín Díaz, Andrew K Ecker, Galen J Correy, Pooja Asthana, Iris D Young, Bryan Faust, Michael C Thompson, Ian B Seiple, Steven Van Dyken, Richard M Locksley, James S Fraser
eLife. 2024; 12: RP89918. Published online 2024 Jun 17. doi: 10.7554/eLife.89918
PMCID:
PMC11182645
AbstractArticlePDF–5.2M
2.
Genetic determinants of micronucleus formation in vivo
D. J. Adams, B. Barlas, R. E. McIntyre, I. Salguero, L. van der Weyden, A. Barros, J. R. Vicente, N. Karimpour, A. Haider, M. Ranzani, G. Turner, N. A. Thompson, V. Harle, R. Olvera-León, C. D. Robles-Espinoza, A. O. Speak, N. Geisler, W. J. Weninger, S. H. Geyer, J. Hewinson, N. A. Karp, The Sanger Mouse Genetics Project, B. Fu, F. Yang, Z. Kozik, J. Choudhary, L. Yu, M. S. van Ruiten, B. D. Rowland, C. J. Lelliott, M. del Castillo Velasco-Herrera, R. Verstraten, L. Bruckner, A. G. Henssen, M. A. Rooimans, J. de Lange, T. J. Mohun, M. J. Arends, K. A. Kentistou, P. A. Coelho, Y. Zhao, H. Zecchini, J. R. B. Perry, S. P. Jackson, G. Balmus
Nature. 2024; 627(8002): 130–136. Published online 2024 Feb 14. doi: 10.1038/s41586-023-07009-0
PMCID:
PMC10917660
AbstractArticlePDF–4.8M
3.
A type 2 immune circuit in the stomach controls mammalian adaptation to dietary chitin
Do-Hyun Kim, Yilin Wang, Haerin Jung, Rachael L. Field, Xinya Zhang, Ta-Chiang Liu, Changqing Ma, James S. Fraser, Jonathan R. Brestoff, Steven J. Van Dyken
Science. Author manuscript; available in PMC 2024 Feb 14.
Published in final edited form as: Science. 2023 Sep 8; 381(6662): 1092–1098. Published online 2023 Sep 7. doi: 10.1126/science.add5649
PMCID:
PMC10865997
AbstractArticlePDF–957K
4.
Aspergillus fumigatus corneal infection is regulated by chitin synthases and by neutrophil–derived acidic mammalian chitinase
Steven de Jesus Carrion, Serena Abbondante, Heather L. Clark, Michaela E. Marshall, Isabelle Mouyna, Anne Beauvais, Yan Sun, Patricia R. Taylor, Sixto M. Leal, Jr., Brittany Armstrong, William Carrera, Jean-Paul Latge, Eric Pearlman
Eur J Immunol. Author manuscript; available in PMC 2020 Feb 4.
Published in final edited form as: Eur J Immunol. 2019 Jun; 49(6): 918–927. Published online 2019 May 14. doi: 10.1002/eji.201847851
PMCID:
PMC6999821
AbstractArticlePDF–1.2M
5.
Mouse screen reveals multiple new genes underlying mouse and human hearing loss
Neil J. Ingham, Selina A. Pearson, Valerie E. Vancollie, Victoria Rook, Morag A. Lewis, Jing Chen, Annalisa Buniello, Elisa Martelletti, Lorenzo Preite, Chi Chung Lam, Felix D. Weiss, Zӧe Powis, Pim Suwannarat, Christopher J. Lelliott, Sally J. Dawson, Jacqueline K. White, Karen P. Steel
PLoS Biol. 2019 Apr; 17(4): e3000194. Published online 2019 Apr 11. doi: 10.1371/journal.pbio.3000194
PMCID:
PMC6459510
AbstractArticlePDF–5.1M
6.
Spontaneous chitin accumulation in airways and age-related fibrotic lung disease
Steven J. Van Dyken, Hong-Erh Liang, Ram P. Naikawadi, Prescott G. Woodruff, Paul J. Wolters, David J. Erle, Richard M. Locksley
Cell. Author manuscript; available in PMC 2018 Apr 20.
Published in final edited form as: Cell. 2017 Apr 20; 169(3): 497–509.e13. doi: 10.1016/j.cell.2017.03.044
PMCID:
PMC5444468
AbstractArticlePDF–1.3M
7.
Loss and Gain of Human Acidic Mammalian Chitinase Activity by Nonsynonymous SNPs
Kazuaki Okawa, Misa Ohno, Akinori Kashimura, Masahiro Kimura, Yuki Kobayashi, Masayoshi Sakaguchi, Yasusato Sugahara, Minori Kamaya, Yoshihiro Kino, Peter O. Bauer, Fumitaka Oyama
Mol Biol Evol. 2016 Dec; 33(12): 3183–3193. Published online 2016 Oct 4. doi: 10.1093/molbev/msw198
PMCID:
PMC5100053
AbstractArticlePDF–1.3M
8.
Acidic chitinase primes the protective immune response to gastrointestinal nematodes
Kevin M Vannella, Thirumalai R Ramalingam, Kevin M Hart, Rafael de Queiroz Prado, Joshua Sciurba, Luke Barron, Lee A Borthwick, Allen D Smith, Margaret Mentink-Kane, Sandra White, Robert W Thompson, Allen W Cheever, Kevin Bock, Ian Moore, Lori J Fitz, Joseph F Urban, Jr, Thomas A Wynn
Nat Immunol. Author manuscript; available in PMC 2017 May 1.
Published in final edited form as: Nat Immunol. 2016 May; 17(5): 538–544. Published online 2016 Apr 4. doi: 10.1038/ni.3417
PMCID:
PMC4970463
AbstractArticlePDF–2.0M
9.
Chitin Recognition via Chitotriosidase Promotes Pathologic Type-2 Helper T Cell Responses to Cryptococcal Infection
Darin L. Wiesner, Charles A. Specht, Chrono K. Lee, Kyle D. Smith, Liliane Mukaremera, S. Thera Lee, Chun G. Lee, Jack A. Elias, Judith N. Nielsen, David R. Boulware, Paul R. Bohjanen, Marc K. Jenkins, Stuart M. Levitz, Kirsten Nielsen
PLoS Pathog. 2015 Mar; 11(3): e1004701. Published online 2015 Mar 12. doi: 10.1371/journal.ppat.1004701
PMCID:
PMC4357429
AbstractArticlePDF–4.3M
10.
Protein A-Mouse Acidic Mammalian Chitinase-V5-His Expressed in Periplasmic Space of Escherichia coli Possesses Chitinase Functions Comparable to CHO-Expressed Protein
Akinori Kashimura, Kazuaki Okawa, Kotarou Ishikawa, Yuta Kida, Kokoro Iwabuchi, Yudai Matsushima, Masayoshi Sakaguchi, Yasusato Sugahara, Fumitaka Oyama
PLoS One. 2013; 8(11): e78669. Published online 2013 Nov 11. doi: 10.1371/journal.pone.0078669
PMCID:
PMC3823863
AbstractArticlePDF–474K
11.
A conditional knockout resource for the genome–wide study of mouse gene function
William C. Skarnes, Barry Rosen, Anthony P. West, Manousos Koutsourakis, Wendy Bushell, Vivek Iyer, Alejandro O. Mujica, Mark Thomas, Jennifer Harrow, Tony Cox, David Jackson, Jessica Severin, Patrick Biggs, Jun Fu, Michael Nefedov, Pieter J. de Jong, A. Francis Stewart, Allan Bradley
Nature. Author manuscript; available in PMC 2013 Feb 14.
Published in final edited form as: Nature. 2011 Jun 15; 474(7351): 337–342. Published online 2011 Jun 15. doi: 10.1038/nature10163
PMCID:
PMC3572410
AbstractArticlePDF–1.1M
12.
Chitinase mRNA Levels by Quantitative PCR Using the Single Standard DNA: Acidic Mammalian Chitinase Is a Major Transcript in the Mouse Stomach
Misa Ohno, Kyoko Tsuda, Masayoshi Sakaguchi, Yasusato Sugahara, Fumitaka Oyama
PLoS One. 2012; 7(11): e50381. Published online 2012 Nov 21. doi: 10.1371/journal.pone.0050381
PMCID:
PMC3503932
AbstractArticlePDF–1.6M
13.
Thyroid Hormone Receptor Repression Linked to Type I Pneumocyte Associated Respiratory Distress Syndrome
Liming Pei, Mathias Leblanc, Grant Barish, Annette Atkins, Russell Nofsinger, Jamie Whyte, David Gold, Mingxiao He, Kazuko Kawamura, Hai-Ri Li, Michael Downes, Ruth T. Yu, Harry Powell, Jerry B. Lingrel, Ronald M. Evans
Nat Med. Author manuscript; available in PMC 2012 Apr 16.
Published in final edited form as: Nat Med. 2011; 17(11): 1466–1472. Published online 2011 Oct 16. doi: 10.1038/nm.2450
PMCID:
PMC3210920
AbstractArticlePDF–2.5M
14.
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas
Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042
PMCID:
PMC3178059
AbstractArticlePDF–1.0M
15.
Acidic Mammalian Chitinase Is Secreted via an ADAM17/Epidermal Growth Factor Receptor-dependent Pathway and Stimulates Chemokine Production by Pulmonary Epithelial Cells
Dominik Hartl, Chuan Hua He, Barbara Koller, Carla A. Da Silva, Robert Homer, Chun G. Lee, Jack A. Elias
J Biol Chem. 2008 Nov 28; 283(48): 33472–33482. doi: 10.1074/jbc.M805574200
PMCID:
PMC2586247
AbstractArticlePDF–888K
16.
The Status, Quality, and Expansion of the NIH Full-Length cDNA Project: The Mammalian Gene Collection (MGC)
Genome Res. 2004 Oct; 14(10b): 2121–2127. doi: 10.1101/gr.2596504
Correction in:
Genome Res. 2006 Jun; 16(6): 804.
PMCID:
PMC528928
AbstractArticlePDF–140K
17.
RIKEN Integrated Sequence Analysis (RISA) System—384-Format Sequencing Pipeline with 384 Multicapillary Sequencer
Kazuhiro Shibata, Masayoshi Itoh, Katsunori Aizawa, Sumiharu Nagaoka, Nobuya Sasaki, Piero Carninci, Hideaki Konno, Junichi Akiyama, Katsuo Nishi, Tokuji Kitsunai, Hideo Tashiro, Mari Itoh, Noriko Sumi, Yoshiyuki Ishii, Shin Nakamura, Makoto Hazama, Tsutomu Nishine, Akira Harada, Rintaro Yamamoto, Hiroyuki Matsumoto, Sumito Sakaguchi, Takashi Ikegami, Katsuya Kashiwagi, Syuji Fujiwake, Kouji Inoue, Yoshiyuki Togawa, Masaki Izawa, Eiji Ohara, Masanori Watahiki, Yuko Yoneda, Tomokazu Ishikawa, Kaori Ozawa, Takumi Tanaka, Shuji Matsuura, Jun Kawai, Yasushi Okazaki, Masami Muramatsu, Yorinao Inoue, Akira Kira, Yoshihide Hayashizaki
Genome Res. 2000 Nov; 10(11): 1757–1771. doi: 10.1101/gr.152600
PMCID:
PMC310992
AbstractArticlePDF–3.4M
18.
Normalization and Subtraction of Cap-Trapper-Selected cDNAs to Prepare Full-Length cDNA Libraries for Rapid Discovery of New Genes
Piero Carninci, Yuko Shibata, Norihito Hayatsu, Yuichi Sugahara, Kazuhiro Shibata, Masayoshi Itoh, Hideaki Konno, Yasushi Okazaki, Masami Muramatsu, Yoshihide Hayashizaki
Genome Res. 2000 Oct; 10(10): 1617–1630. doi: 10.1101/gr.145100
PMCID:
PMC310980
AbstractArticlePDF–1.4M
19.
GenePaint.org: an atlas of gene expression patterns in the mouse embryo
Axel Visel, Christina Thaller, Gregor Eichele
Nucleic Acids Res. 2004 Jan 1; 32(Database issue): D552–D556. doi: 10.1093/nar/gkh029
PMCID:
PMC308763
AbstractArticlePDF–253K
20.
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences
Mammalian Gene Collection (MGC) Program Team
Proc Natl Acad Sci U S A. 2002 Dec 24; 99(26): 16899–16903. Published online 2002 Dec 11. doi: 10.1073/pnas.242603899
PMCID:
PMC139241
AbstractArticlePDF–118K

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