PMC Links for GEO Profiles (Select 18781852) - PMC

Select item 109017391.

A single-cell time-lapse of mouse prenatal development from gastrula to birth

Chengxiang Qiu, Beth K. Martin, Ian C. Welsh, Riza M. Daza, Truc-Mai Le, Xingfan Huang, Eva K. Nichols, Megan L. Taylor, Olivia Fulton, Diana R. O’Day, Anne Roshella Gomes, Saskia Ilcisin, Sanjay Srivatsan, Xinxian Deng, Christine M. Disteche, William Stafford Noble, Nobuhiko Hamazaki, Cecilia B. Moens, David Kimelman, Junyue Cao, Alexander F. Schier, Malte Spielmann, Stephen A. Murray, Cole Trapnell, Jay Shendure

Nature. 2024; 626(8001): 1084–1093. Published online 2024 Feb 14. doi: 10.1038/s41586-024-07069-w

PMCID:: PMC10901739

Abstract Article PDF–63M

Select item 98415972.

Muc16 Depletion Diminishes KRAS-induced Tumorigenesis and Metastasis by Altering Tumor Microenvironment Factors in Pancreatic Ductal Adenocarcinoma

Imayavaramban Lakshmanan, Saravanakumar Marimuthu, Sanjib Chaudhary, Parthasarathy Seshacharyulu, Satyanarayana Rachagani, Sakthivel Muniyan, Ramakanth Chirravuri-Venkata, Pranita Atri, Sanchita Rauth, Rama Krishna Nimmakayala, Jawed Akhtar Siddiqui, Shailendra K. Gautam, Ashu Shah, Gopalakrishnan Natarajan, Seema C. Parte, Namita Bhyravbhatla, Kavita Mallya1, Dhanya Haridas, Geoffrey A. Talmon, Lynette M. Smith, Sushil Kumar, Apar K. Ganti, Maneesh Jain, Moorthy P. Ponnusamy, Surinder K. Batra

Oncogene. Author manuscript; available in PMC 2023 May 1.

Published in final edited form as: Oncogene. 2022 Nov; 41(48): 5147–5159. Published online 2022 Oct 21. doi: 10.1038/s41388-022-02493-6

PMCID:: PMC9841597

Abstract Article PDF–2.2M

Select item 93558723.

Genome-wide bidirectional CRISPR screens identify mucins as host factors modulating SARS-CoV-2 infection

Scott B. Biering, Sylvia A. Sarnik, Eleanor Wang, James R. Zengel, Sarah R. Leist, Alexandra Schäfer, Varun Sathyan, Padraig Hawkins, Kenichi Okuda, Cyrus Tau, Aditya R. Jangid, Connor V. Duffy, Jin Wei, Rodney C. Gilmore, Mia Madel Alfajaro, Madison S. Strine, Xammy Nguyenla, Erik Van Dis, Carmelle Catamura, Livia H. Yamashiro, Julia A. Belk, Adam Begeman, Jessica C. Stark, D. Judy Shon, Douglas M. Fox, Shahrzad Ezzatpour, Emily Huang, Nico Olegario, Arjun Rustagi, Allison S. Volmer, Alessandra Livraghi-Butrico, Eddie Wehri, Richard R. Behringer, Dong-Joo Cheon, Julia Schaletzky, Hector C. Aguilar, Andreas S. Puschnik, Brian Button, Benjamin A. Pinsky, Catherine A. Blish, Ralph S. Baric, Wanda K. O’Neal, Carolyn R. Bertozzi, Craig B. Wilen, Richard C. Boucher, Jan E. Carette, Sarah A. Stanley, Eva Harris, Silvana Konermann, Patrick D. Hsu

Nat Genet. 2022; 54(8): 1078–1089. Published online 2022 Jul 25. doi: 10.1038/s41588-022-01131-x

PMCID:: PMC9355872

Abstract Article PDF–14M

Select item 83274694.

MUC16 suppresses human and murine innate immune responses

Mildred Felder, Arvinder Kapur, Alexander L. Rakhmilevich, Xiaoyi Qu, Paul M. Sondel, Stephen D. Gillies, Joseph Connor, Manish S. Patankar

Gynecol Oncol. Author manuscript; available in PMC 2021 Aug 2.

Published in final edited form as: Gynecol Oncol. 2019 Mar; 152(3): 618–628. Published online 2019 Jan 6. doi: 10.1016/j.ygyno.2018.12.023

PMCID:: PMC8327469

Abstract Article PDF–1.1M

Select item 83077495.

Immunotherapy-based targeting of MSLN⁺ activated portal fibroblasts is a strategy for treatment of cholestatic liver fibrosis

Takahiro Nishio, Yukinori Koyama, Xiao Liu, Sara B. Rosenthal, Gen Yamamoto, Hiroaki Fuji, Jacopo Baglieri, Na Li, Laura N. Brenner, Keiko Iwaisako, Kojiro Taura, James S. Hagood, Nicholas F. LaRusso, Tapan K. Bera, Ira Pastan, David A. Brenner, Tatiana Kisseleva

Proc Natl Acad Sci U S A. 2021 Jul 20; 118(29): e2101270118. Published online 2021 Jul 12. doi: 10.1073/pnas.2101270118

PMCID:: PMC8307749

Abstract Article PDF–3.3M

Select item 53738916.

Mesothelin/mucin 16 signaling in activated portal fibroblasts regulates cholestatic liver fibrosis

Yukinori Koyama, Ping Wang, Shuang Liang, Keiko Iwaisako, Xiao Liu, Jun Xu, Mingjun Zhang, Mengxi Sun, Min Cong, Daniel Karin, Kojiro Taura, Chris Benner, Sven Heinz, Tapan Bera, David A. Brenner, Tatiana Kisseleva

J Clin Invest. 2017 Apr 3; 127(4): 1254–1270. Published online 2017 Mar 13. doi: 10.1172/JCI88845

PMCID:: PMC5373891

Abstract Article PDF–5.2M

Select item 45816177.

Effects of the Loss of Conjunctival Muc16 on Corneal Epithelium and Stroma in Mice

Kumi Shirai, Yuka Okada, Dong-Joo Cheon, Masayasu Miyajima, Richard R. Behringer, Osamu Yamanaka, Shizuya Saika

Invest Ophthalmol Vis Sci. 2014 Jun; 55(6): 3626–3637. Published online 2014 Jun 10. doi: 10.1167/iovs.13-12955

PMCID:: PMC4581617

Abstract Article PDF–836K

Select item 44950118.

Suppression of Toll-like Receptor-Mediated Innate Immune Responses at the Ocular Surface by the Membrane-associated Mucins MUC1 and MUC16

Balaraj B. Menon, Christina Kaiser-Marko, Sandra Spurr-Michaud, Ann S. Tisdale, Ilene K. Gipson

Mucosal Immunol. Author manuscript; available in PMC 2016 Mar 1.

Published in final edited form as: Mucosal Immunol. 2015 Sep; 8(5): 1000–1008. Published online 2015 Jan 7. doi: 10.1038/mi.2014.127

PMCID:: PMC4495011

Abstract Article PDF–682K

Select item 31780599.

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas

Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042

PMCID:: PMC3178059

Abstract Article PDF–1.0M

Select item 302253410.

A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo

Graciana Diez-Roux, Sandro Banfi, Marc Sultan, Lars Geffers, Santosh Anand, David Rozado, Alon Magen, Elena Canidio, Massimiliano Pagani, Ivana Peluso, Nathalie Lin-Marq, Muriel Koch, Marchesa Bilio, Immacolata Cantiello, Roberta Verde, Cristian De Masi, Salvatore A. Bianchi, Juliette Cicchini, Elodie Perroud, Shprese Mehmeti, Emilie Dagand, Sabine Schrinner, Asja Nürnberger, Katja Schmidt, Katja Metz, Christina Zwingmann, Norbert Brieske, Cindy Springer, Ana Martinez Hernandez, Sarah Herzog, Frauke Grabbe, Cornelia Sieverding, Barbara Fischer, Kathrin Schrader, Maren Brockmeyer, Sarah Dettmer, Christin Helbig, Violaine Alunni, Marie-Annick Battaini, Carole Mura, Charlotte N. Henrichsen, Raquel Garcia-Lopez, Diego Echevarria, Eduardo Puelles, Elena Garcia-Calero, Stefan Kruse, Markus Uhr, Christine Kauck, Guangjie Feng, Nestor Milyaev, Chuang Kee Ong, Lalit Kumar, MeiSze Lam, Colin A. Semple, Attila Gyenesei, Stefan Mundlos, Uwe Radelof, Hans Lehrach, Paolo Sarmientos, Alexandre Reymond, Duncan R. Davidson, Pascal Dollé, Stylianos E. Antonarakis, Marie-Laure Yaspo, Salvador Martinez, Richard A. Baldock, Gregor Eichele, Andrea Ballabio

PLoS Biol. 2011 Jan; 9(1): e1000582. Published online 2011 Jan 18. doi: 10.1371/journal.pbio.1000582

PMCID:: PMC3022534

Abstract Article PDF–3.8M

Select item 266497711.

Expression of Muc19/Smgc Gene Products During Murine Sublingual Gland Development: Cytodifferentiation and Maturation of Salivary Mucous Cells

Biswadip Das, Melanie N. Cash, Arthur R. Hand, Armin Shivazad, David J. Culp

J Histochem Cytochem. 2009 Apr; 57(4): 383–396. doi: 10.1369/jhc.2008.952853

PMCID:: PMC2664977

Abstract Article PDF–2.2M

Select item 265041012.

CA125/MUC16 Is Dispensable for Mouse Development and Reproduction

Dong-Joo Cheon, Ying Wang, Jian Min Deng, Zhen Lu, Lianchun Xiao, Chun-Ming Chen, Robert C. Bast, Jr., Richard R. Behringer

PLoS One. 2009; 4(3): e4675. Published online 2009 Mar 5. doi: 10.1371/journal.pone.0004675

PMCID:: PMC2650410

Abstract Article PDF–735K

Select item 263504513.

A Binding Domain on Mesothelin for CA125/MUC16

Osamu Kaneko, Lucy Gong, Jingli Zhang, Johanna K. Hansen, Raffit Hassan, Byungkook Lee, Mitchell Ho

J Biol Chem. 2009 Feb 6; 284(6): 3739–3749. doi: 10.1074/jbc.M806776200

PMCID:: PMC2635045

Abstract Article PDF–834K

Select item 259312414.

MUC16 expression during embryogenesis, in adult tissues, and ovarian cancer in the mouse

Ying Wang, Dong-Joo Cheon, Zhen Lu, Sheena L. Cunningham, Chun-Ming Chen, Robert Z. Luo, Deyin Xing, Sandra Orsulic, Robert C. Bast, Jr., Richard R. Behringer

Differentiation. Author manuscript; available in PMC 2008 Dec 3.

Published in final edited form as: Differentiation. 2008 Dec; 76(10): 1081–1092. Published online 2008 Jul 2. doi: 10.1111/j.1432-0436.2008.00295.x

PMCID:: PMC2593124

Abstract Article PDF–1.5M

Select item 31099215.

RIKEN Integrated Sequence Analysis (RISA) System—384-Format Sequencing Pipeline with 384 Multicapillary Sequencer

Kazuhiro Shibata, Masayoshi Itoh, Katsunori Aizawa, Sumiharu Nagaoka, Nobuya Sasaki, Piero Carninci, Hideaki Konno, Junichi Akiyama, Katsuo Nishi, Tokuji Kitsunai, Hideo Tashiro, Mari Itoh, Noriko Sumi, Yoshiyuki Ishii, Shin Nakamura, Makoto Hazama, Tsutomu Nishine, Akira Harada, Rintaro Yamamoto, Hiroyuki Matsumoto, Sumito Sakaguchi, Takashi Ikegami, Katsuya Kashiwagi, Syuji Fujiwake, Kouji Inoue, Yoshiyuki Togawa, Masaki Izawa, Eiji Ohara, Masanori Watahiki, Yuko Yoneda, Tomokazu Ishikawa, Kaori Ozawa, Takumi Tanaka, Shuji Matsuura, Jun Kawai, Yasushi Okazaki, Masami Muramatsu, Yorinao Inoue, Akira Kira, Yoshihide Hayashizaki

Genome Res. 2000 Nov; 10(11): 1757–1771. doi: 10.1101/gr.152600

PMCID:: PMC310992

Abstract Article PDF–3.4M

Select item 31098016.

Normalization and Subtraction of Cap-Trapper-Selected cDNAs to Prepare Full-Length cDNA Libraries for Rapid Discovery of New Genes

Piero Carninci, Yuko Shibata, Norihito Hayatsu, Yuichi Sugahara, Kazuhiro Shibata, Masayoshi Itoh, Hideaki Konno, Yasushi Okazaki, Masami Muramatsu, Yoshihide Hayashizaki

Genome Res. 2000 Oct; 10(10): 1617–1630. doi: 10.1101/gr.145100

PMCID:: PMC310980

Abstract Article PDF–1.4M

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