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Items: 19

1.
Genetic determinants of micronucleus formation in vivo
D. J. Adams, B. Barlas, R. E. McIntyre, I. Salguero, L. van der Weyden, A. Barros, J. R. Vicente, N. Karimpour, A. Haider, M. Ranzani, G. Turner, N. A. Thompson, V. Harle, R. Olvera-León, C. D. Robles-Espinoza, A. O. Speak, N. Geisler, W. J. Weninger, S. H. Geyer, J. Hewinson, N. A. Karp, The Sanger Mouse Genetics Project, B. Fu, F. Yang, Z. Kozik, J. Choudhary, L. Yu, M. S. van Ruiten, B. D. Rowland, C. J. Lelliott, M. del Castillo Velasco-Herrera, R. Verstraten, L. Bruckner, A. G. Henssen, M. A. Rooimans, J. de Lange, T. J. Mohun, M. J. Arends, K. A. Kentistou, P. A. Coelho, Y. Zhao, H. Zecchini, J. R. B. Perry, S. P. Jackson, G. Balmus
Nature. 2024; 627(8002): 130–136. Published online 2024 Feb 14. doi: 10.1038/s41586-023-07009-0
PMCID:
PMC10917660
AbstractArticlePDF–4.8M
2.
Dominant role of DNA methylation over H3K9me3 for IAP silencing in endoderm
Zeyang Wang, Rui Fan, Angela Russo, Filippo M. Cernilogar, Alexander Nuber, Silvia Schirge, Irina Shcherbakova, Iva Dzhilyanova, Enes Ugur, Tobias Anton, Lisa Richter, Heinrich Leonhardt, Heiko Lickert, Gunnar Schotta
Nat Commun. 2022; 13: 5447. Published online 2022 Sep 19. doi: 10.1038/s41467-022-32978-7
PMCID:
PMC9485127
AbstractArticlePDF–5.6M
3.
Neuropathy-associated Fars2 deficiency affects neuronal development and potentiates neuronal apoptosis by impairing mitochondrial function
Xihui Chen, Fangfang Liu, Bowen Li, Yufeng Wang, Lijuan Yuan, Anan Yin, Qi Chen, Weihong Hu, Yan Yao, Mengjie Zhang, YuanMing Wu, Kun Chen
Cell Biosci. 2022; 12: 103. Published online 2022 Jul 6. doi: 10.1186/s13578-022-00838-y
PMCID:
PMC9258231
AbstractArticlePDF–12M
4.
Pancreatic Progenitor Commitment Is Marked by an Increase in Ink4a/Arf Expression
Elena Montano, Alessandra Pollice, Valeria Lucci, Geppino Falco, Ornella Affinito, Girolama La Mantia, Maria Vivo, Tiziana Angrisano
Biomolecules. 2021 Aug; 11(8): 1124. Published online 2021 Jul 30. doi: 10.3390/biom11081124
PMCID:
PMC8392192
AbstractArticlePDF–1.8M
5.
Insight into Nephrocan Function in Mouse Endoderm Patterning
Martina Addeo, Silvia Buonaiuto, Ilaria Guerriero, Elena Amendola, Feliciano Visconte, Antonio Marino, Maria Teresa De Angelis, Filomena Russo, Luca Roberto, Pina Marotta, Nicola Antonino Russo, Anna Iervolino, Federica Amodio, Mario De Felice, Valeria Lucci, Geppino Falco
Int J Mol Sci. 2020 Jan; 21(1): 8. Published online 2019 Dec 18. doi: 10.3390/ijms21010008
PMCID:
PMC6981620
AbstractArticlePDF–2.4M
6.
The emergent landscape of the mouse gut endoderm at single-cell resolution
Sonja Nowotschin, Manu Setty, Ying-Yi Kuo, Vincent Liu, Vidur Garg, Roshan Sharma, Claire S. Simon, Nestor Saiz, Rui Gardner, Stéphane C. Boutet, Deanna M. Church, Pamela A. Hoodless, Anna-Katerina Hadjantonakis, Dana Pe’er
Nature. Author manuscript; available in PMC 2019 Nov 1.
Published in final edited form as: Nature. 2019 May; 569(7756): 361–367. Published online 2019 Apr 8. doi: 10.1038/s41586-019-1127-1
PMCID:
PMC6724221
AbstractArticlePDF–6.5M
7.
A regulatory network controls nephrocan expression and midgut patterning
Juan Hou, Wei Wei, Ranajeet S. Saund, Ping Xiang, Thomas J. Cunningham, Yuyin Yi, Olivia Alder, Daphne Y. D. Lu, Joanne G. A. Savory, Nicole A. J. Krentz, Rachel Montpetit, Rebecca Cullum, Nicole Hofs, David Lohnes, R. Keith Humphries, Yojiro Yamanaka, Gregg Duester, Yukio Saijoh, Pamela A. Hoodless
Development. 2014 Oct; 141(19): 3772–3781. doi: 10.1242/dev.108274
PMCID:
PMC4197584
AbstractArticle
8.
Loss of Function of Mouse Pax-Interacting Protein 1-Associated Glutamate Rich Protein 1a (Pagr1a) Leads to Reduced Bmp2 Expression and Defects in Chorion and Amnion Development
Amit Kumar, Margaret Lualdi, Jadranka Loncarek, Young-Wook Cho, Ji-Eun Lee, Kai Ge, Michael R. Kuehn
Dev Dyn. Author manuscript; available in PMC 2015 Jul 1.
Published in final edited form as: Dev Dyn. 2014 Jul; 243(7): 937–947. Published online 2014 Apr 17. doi: 10.1002/dvdy.24125
PMCID:
PMC4153430
AbstractArticlePDF–1.7M
9.
The International Mouse Phenotyping Consortium Web Portal, a unified point of access for knockout mice and related phenotyping data
Gautier Koscielny, Gagarine Yaikhom, Vivek Iyer, Terrence F. Meehan, Hugh Morgan, Julian Atienza-Herrero, Andrew Blake, Chao-Kung Chen, Richard Easty, Armida Di Fenza, Tanja Fiegel, Mark Grifiths, Alan Horne, Natasha A. Karp, Natalja Kurbatova, Jeremy C. Mason, Peter Matthews, Darren J. Oakley, Asfand Qazi, Jack Regnart, Ahmad Retha, Luis A. Santos, Duncan J. Sneddon, Jonathan Warren, Henrik Westerberg, Robert J. Wilson, David G. Melvin, Damian Smedley, Steve D. M. Brown, Paul Flicek, William C. Skarnes, Ann-Marie Mallon, Helen Parkinson
Nucleic Acids Res. 2014 Jan 1; 42(Database issue): D802–D809. Published online 2013 Nov 3. doi: 10.1093/nar/gkt977
PMCID:
PMC3964955
AbstractArticlePDF–5.7M
10.
A conditional knockout resource for the genome–wide study of mouse gene function
William C. Skarnes, Barry Rosen, Anthony P. West, Manousos Koutsourakis, Wendy Bushell, Vivek Iyer, Alejandro O. Mujica, Mark Thomas, Jennifer Harrow, Tony Cox, David Jackson, Jessica Severin, Patrick Biggs, Jun Fu, Michael Nefedov, Pieter J. de Jong, A. Francis Stewart, Allan Bradley
Nature. Author manuscript; available in PMC 2013 Feb 14.
Published in final edited form as: Nature. 2011 Jun 15; 474(7351): 337–342. Published online 2011 Jun 15. doi: 10.1038/nature10163
PMCID:
PMC3572410
AbstractArticlePDF–1.1M
11.
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas
Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042
PMCID:
PMC3178059
AbstractArticlePDF–1.0M
12.
A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo
Graciana Diez-Roux, Sandro Banfi, Marc Sultan, Lars Geffers, Santosh Anand, David Rozado, Alon Magen, Elena Canidio, Massimiliano Pagani, Ivana Peluso, Nathalie Lin-Marq, Muriel Koch, Marchesa Bilio, Immacolata Cantiello, Roberta Verde, Cristian De Masi, Salvatore A. Bianchi, Juliette Cicchini, Elodie Perroud, Shprese Mehmeti, Emilie Dagand, Sabine Schrinner, Asja Nürnberger, Katja Schmidt, Katja Metz, Christina Zwingmann, Norbert Brieske, Cindy Springer, Ana Martinez Hernandez, Sarah Herzog, Frauke Grabbe, Cornelia Sieverding, Barbara Fischer, Kathrin Schrader, Maren Brockmeyer, Sarah Dettmer, Christin Helbig, Violaine Alunni, Marie-Annick Battaini, Carole Mura, Charlotte N. Henrichsen, Raquel Garcia-Lopez, Diego Echevarria, Eduardo Puelles, Elena Garcia-Calero, Stefan Kruse, Markus Uhr, Christine Kauck, Guangjie Feng, Nestor Milyaev, Chuang Kee Ong, Lalit Kumar, MeiSze Lam, Colin A. Semple, Attila Gyenesei, Stefan Mundlos, Uwe Radelof, Hans Lehrach, Paolo Sarmientos, Alexandre Reymond, Duncan R. Davidson, Pascal Dollé, Stylianos E. Antonarakis, Marie-Laure Yaspo, Salvador Martinez, Richard A. Baldock, Gregor Eichele, Andrea Ballabio
PLoS Biol. 2011 Jan; 9(1): e1000582. Published online 2011 Jan 18. doi: 10.1371/journal.pbio.1000582
PMCID:
PMC3022534
AbstractArticlePDF–3.8M
13.
Dynamic patterning at the pylorus: formation of an epithelial intestine-stomach boundary in late fetal life
Xing Li, Aaron M. Udager, Chunbo Hu, Xiaotan Qiao, Neil Richards, Deborah L. Gumucio
Dev Dyn. Author manuscript; available in PMC 2010 Dec 1.
Published in final edited form as: Dev Dyn. 2009 Dec; 238(12): 3205–3217. doi: 10.1002/dvdy.22134
PMCID:
PMC2927962
AbstractArticlePDF–2.3M
14.
Identification of known and novel pancreas genes expressed downstream of Nkx2.2 during development
Keith R Anderson, Peter White, Klaus H Kaestner, Lori Sussel
BMC Dev Biol. 2009; 9: 65. Published online 2009 Dec 10. doi: 10.1186/1471-213X-9-65
PMCID:
PMC2799404
AbstractArticlePDF–2.5M
15.
Transcriptome-based systematic identification of extracellular matrix proteins
Ri-ichiroh Manabe, Ko Tsutsui, Tomiko Yamada, Mina Kimura, Itsuko Nakano, Chisei Shimono, Noriko Sanzen, Yutaka Furutani, Tomohiko Fukuda, Yasuko Oguri, Keiko Shimamoto, Daiji Kiyozumi, Yuya Sato, Yoshikazu Sado, Haruki Senoo, Shohei Yamashina, Shiro Fukuda, Jun Kawai, Nobuo Sugiura, Koji Kimata, Yoshihide Hayashizaki, Kiyotoshi Sekiguchi
Proc Natl Acad Sci U S A. 2008 Sep 2; 105(35): 12849–12854. Published online 2008 Aug 29. doi: 10.1073/pnas.0803640105
PMCID:
PMC2529034
AbstractArticlePDF–1.1M
16.
A systematic screen for genes expressed in definitive endoderm by Serial Analysis of Gene Expression (SAGE)
Juan Hou, Anita M Charters, Sam C Lee, Yongjun Zhao, Mona K Wu, Steven JM Jones, Marco A Marra, Pamela A Hoodless
BMC Dev Biol. 2007; 7: 92. Published online 2007 Aug 2. doi: 10.1186/1471-213X-7-92
PMCID:
PMC1950885
AbstractArticlePDF–1.7M
17.
RIKEN Integrated Sequence Analysis (RISA) System—384-Format Sequencing Pipeline with 384 Multicapillary Sequencer
Kazuhiro Shibata, Masayoshi Itoh, Katsunori Aizawa, Sumiharu Nagaoka, Nobuya Sasaki, Piero Carninci, Hideaki Konno, Junichi Akiyama, Katsuo Nishi, Tokuji Kitsunai, Hideo Tashiro, Mari Itoh, Noriko Sumi, Yoshiyuki Ishii, Shin Nakamura, Makoto Hazama, Tsutomu Nishine, Akira Harada, Rintaro Yamamoto, Hiroyuki Matsumoto, Sumito Sakaguchi, Takashi Ikegami, Katsuya Kashiwagi, Syuji Fujiwake, Kouji Inoue, Yoshiyuki Togawa, Masaki Izawa, Eiji Ohara, Masanori Watahiki, Yuko Yoneda, Tomokazu Ishikawa, Kaori Ozawa, Takumi Tanaka, Shuji Matsuura, Jun Kawai, Yasushi Okazaki, Masami Muramatsu, Yorinao Inoue, Akira Kira, Yoshihide Hayashizaki
Genome Res. 2000 Nov; 10(11): 1757–1771. doi: 10.1101/gr.152600
PMCID:
PMC310992
AbstractArticlePDF–3.4M
18.
Normalization and Subtraction of Cap-Trapper-Selected cDNAs to Prepare Full-Length cDNA Libraries for Rapid Discovery of New Genes
Piero Carninci, Yuko Shibata, Norihito Hayatsu, Yuichi Sugahara, Kazuhiro Shibata, Masayoshi Itoh, Hideaki Konno, Yasushi Okazaki, Masami Muramatsu, Yoshihide Hayashizaki
Genome Res. 2000 Oct; 10(10): 1617–1630. doi: 10.1101/gr.145100
PMCID:
PMC310980
AbstractArticlePDF–1.4M
19.
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences
Mammalian Gene Collection (MGC) Program Team
Proc Natl Acad Sci U S A. 2002 Dec 24; 99(26): 16899–16903. Published online 2002 Dec 11. doi: 10.1073/pnas.242603899
PMCID:
PMC139241
AbstractArticlePDF–118K

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