PMC Links for GEO Profiles (Select 1841024) - PMC

Keith A. Lawson, Cristovão M. Sousa, Xiaoyu Zhang, Eiru Kim, Rummy Akthar, Joseph J. Caumanns, Yuxi Yao, Nicholas Mikolajewicz, Catherine Ross, Kevin R. Brown, Abdelrahman Abou Zid, Zi Peng Fan, Shirley Hui, Jordan A. Krall, Donald M. Simons, Chloe J. Slater, Victor De Jesus, Lujia Tang, Richa Singh, Joshua E. Goldford, Sarah Martin, Qian Huang, Elizabeth A. Francis, Andrea Habsid, Ryan Climie, David Tieu, Jiarun Wei, Ren Li, Amy Hin Yan Tong, Michael Aregger, Katherine S. Chan, Hong Han, Xiaowei Wang, Patricia Mero, John H. Brumell, Antonio Finelli, Laurie Ailles, Gary Bader, Gromoslaw A. Smolen, Gillian A. Kingsbury, Traver Hart, Charles Kung, Jason Moffat

Nature. Author manuscript; available in PMC 2022 Apr 18.

Published in final edited form as: Nature. 2020 Oct; 586(7827): 120–126. Published online 2020 Sep 23. doi: 10.1038/s41586-020-2746-2

PMCID:: PMC9014559

Abstract Article PDF–6.6M

Select item 84638064.

Aire regulates chromatin looping by evicting CTCF from domain boundaries and favoring accumulation of cohesin on superenhancers

Kushagra Bansal, Daniel A. Michelson, Ricardo N. Ramirez, Aaron D. Viny, Ross L. Levine, Christophe Benoist, Diane Mathis

Proc Natl Acad Sci U S A. 2021 Sep 21; 118(38): e2110991118. Published online 2021 Sep 13. doi: 10.1073/pnas.2110991118

PMCID:: PMC8463806

Abstract Article PDF–5.3M

Select item 82921665.

A functional taxonomy of tumor suppression in oncogenic KRAS-driven lung cancer

Hongchen Cai, Su Kit Chew, Chuan Li, Min K. Tsai, Laura Andrejka, Christopher W. Murray, Nicholas W. Hughes, Emily G. Shuldiner, Emily L. Ashkin, Rui Tang, King L. Hung, Leo C. Chen, Shi Ya C. Lee, Maryam Yousefi, Wen-Yang Lin, Christian A. Kunder, Le Cong, Christopher D. McFarland, Dmitri A. Petrov, Charles Swanton, Monte M. Winslow

Cancer Discov. Author manuscript; available in PMC 2022 Jan 1.

Published in final edited form as: Cancer Discov. 2021 Jul; 11(7): 1754–1773. Published online 2021 Feb 19. doi: 10.1158/2159-8290.CD-20-1325

PMCID:: PMC8292166

Abstract Article PDF–3.3M

Select item 74183336.

Distinct and overlapping roles of STAG1 and STAG2 in cohesin localization and gene expression in embryonic stem cells

Nicole L. Arruda, Zachary M. Carico, Megan Justice, Ying Frances Liu, Junjie Zhou, Holden C. Stefan, Jill M. Dowen

Epigenetics Chromatin. 2020; 13: 32. Published online 2020 Aug 10. doi: 10.1186/s13072-020-00353-9

PMCID:: PMC7418333

Abstract Article PDF–11M

Select item 73684947.

The sperm associated antigen 6 interactome and its role in spermatogenesis

Yunhao Liu, Ling Zhang, Wei Li, Yuhong Li, Junpin Liu, Shiyang Zhang, Guanglun Pin, Shizhen Song, Pierre F Ray, Christophe Arnoult, Chunghee Cho, Balbina Garcia-Reyes, Uwe Knippschild, Jerome F. Strauss, III, Zhibing Zhang

Reproduction. Author manuscript; available in PMC 2020 Jul 18.

Published in final edited form as: Reproduction. 2019 Aug; 158(2): 181–197. doi: 10.1530/REP-18-0522

PMCID:: PMC7368494

Abstract Article PDF–1.8M

Select item 72698208.

Combined Cohesin-Runx1 Deficiency Synergistically Perturbs Chromatin Looping and Causes Myelodysplastic Syndromes

Yotaro Ochi, Ayana Kon, Toyonori Sakata, Masahiro M Nakagawa, Naotaka Nakazawa, Masanori Kakuta, Keisuke Kataoka, Haruhiko Koseki, Manabu Nakayama, Daisuke Morishita, Tatsuaki Tsuruyama, Ryunosuke Saiki, Akinori Yoda, Rurika Okuda, Tetsuichi Yoshizato, Kenichi Yoshida, Yusuke Shiozawa, Yasuhito Nannya, Shinichi Kotani, Yasunori Kogure, Nobuyuki Kakiuchi, Tomomi Nishimura, Hideki Makishima, Luca Malcovati, Akihiko Yokoyama, Kengo Takeuchi, Eiji Sugihara, Taka-aki Sato, Masashi Sanada, Akifumi Takaori-Kondo, Mario Cazzola, Mineko Kengaku, Satoru Miyano, Katsuhiko Shirahige, Hiroshi I Suzuki, Seishi Ogawa

Cancer Discov. Author manuscript; available in PMC 2020 Dec 1.

Published in final edited form as: Cancer Discov. 2020 Jun; 10(6): 836–853. Published online 2020 Apr 5. doi: 10.1158/2159-8290.CD-19-0982

PMCID:: PMC7269820

Abstract Article PDF–3.2M

Select item 69413509.

Loss of Stag2 cooperates with EWS-FLI1 to transform murine Mesenchymal stem cells

Marc El Beaino, Jiayong Liu, Amanda R. Wasylishen, Rasoul Pourebrahim, Agata Migut, Bryan J. Bessellieu, Ke Huang, Patrick P. Lin

BMC Cancer. 2020; 20: 3. Published online 2020 Jan 2. doi: 10.1186/s12885-019-6465-8

PMCID:: PMC6941350

Abstract Article PDF–6.2M

Select item 684243810.

Cohesin members Stag1 and Stag2 display distinct roles in chromatin accessibility and topological control of HSC self-renewal and differentiation

Aaron D. Viny, Robert L. Bowman, Yu Liu, Vincent-Philippe Lavallée, Shira E. Eisman, Wenbin Xiao, Benjamin H. Durham, Anastasia Navitski, Jane Park, Stephanie Braunstein, Besmira Alija, Abdul Karzai, Isabelle S. Csete, Matthew Witkin, Elham Azizi, Timour Baslan, Christopher J. Ott, Dana Pe’er, Job Dekker, Richard Koche, Ross L. Levine

Cell Stem Cell. Author manuscript; available in PMC 2020 Nov 7.

Published in final edited form as: Cell Stem Cell. 2019 Nov 7; 25(5): 682–696.e8. Published online 2019 Sep 5. doi: 10.1016/j.stem.2019.08.003

PMCID:: PMC6842438

Abstract Article PDF–3.4M

Select item 672539411.

Telencephalic Embryonic Subtractive Sequences: A Unique Collection of Neurodevelopmental Genes

Alessandro Bulfone, Pietro Carotenuto, Andrea Faedo, Veruska Aglio, Livia Garzia, Anna Maria Bello, Andrea Basile, Alessandra Andrè, Massimo Cocchia, Ombretta Guardiola, Andrea Ballabio, John L. R. Rubenstein, Massimo Zollo

J Neurosci. 2005 Aug 17; 25(33): 7586–7600. doi: 10.1523/JNEUROSCI.0522-05.2005

PMCID:: PMC6725394

Abstract Article PDF–682K

Select item 629400112.

miR-122 removal in the liver activates imprinted microRNAs and enables more effective microRNA-mediated gene repression

Paul N. Valdmanis, Hak Kyun Kim, Kirk Chu, Feijie Zhang, Jianpeng Xu, Elizabeth M. Munding, Jia Shen, Mark A. Kay

Nat Commun. 2018; 9: 5321. Published online 2018 Dec 14. doi: 10.1038/s41467-018-07786-7

PMCID:: PMC6294001

Abstract Article PDF–859K

Select item 422640313.

Quantitative analysis of cohesin complex stoichiometry and SMC3 modification-dependent protein interactions

Chen Ding, Yehua Li, Beom-Jun Kim, Anna Malovannaya, Sung Yun Jung, Yi Wang, Jun Qin

J Proteome Res. Author manuscript; available in PMC 2014 Nov 10.

Published in final edited form as: J Proteome Res. 2011 Aug 5; 10(8): 3652–3659. Published online 2011 Jul 8. doi: 10.1021/pr2002758

PMCID:: PMC4226403

Abstract Article PDF–1017K

Select item 419802714.

STAG3-mediated stabilization of REC8 cohesin complexes promotes chromosome synapsis during meiosis

Tomoyuki Fukuda, Nanaho Fukuda, Ana Agostinho, Abrahan Hernández-Hernández, Anna Kouznetsova, Christer Höög

EMBO J. 2014 Jun 2; 33(11): 1243–1255. Published online 2014 May 5. doi: 10.1002/embj.201387329

PMCID:: PMC4198027

Abstract Article PDF–2.5M

Select item 407349415.

The Central Role of EED in the Orchestration of Polycomb Group Complexes

Qi Cao, Xiaoju Wang, Meng Zhao, Rendong Yang, Rohit Malik, Yuanyuan Qiao, Anton Poliakov, Anastasia K. Yocum, Yong Li, Wei Chen, Xuhong Cao, Xia Jiang, Arun Dahiya, Clair Harris, Felix Y. Feng, Sundeep Kalantry, Zhaohui S. Qin, Saravana M. Dhanasekaran, Arul M. Chinnaiyan

Nat Commun. Author manuscript; available in PMC 2014 Jul 24.

Published in final edited form as: Nat Commun. 2014; 5: 3127. doi: 10.1038/ncomms4127

PMCID:: PMC4073494

Abstract Article PDF–2.1M

Select item 382580616.

Reduction of Nipbl impairs cohesin loading locally and affects transcription but not cohesion-dependent functions in a mouse model of Cornelia de Lange Syndrome

Silvia Remeseiro, Ana Cuadrado, Shimako Kawauchi, Anne L. Calof, Arthur D. Lander, Ana Losada

Biochim Biophys Acta. Author manuscript; available in PMC 2014 Dec 1.

Published in final edited form as: Biochim Biophys Acta. 2013 Dec; 1832(12): 10.1016/j.bbadis.2013.07.020. Published online 2013 Aug 3. doi: 10.1016/j.bbadis.2013.07.020

PMCID:: PMC3825806

Abstract Article PDF–912K

Select item 357241017.

A conditional knockout resource for the genome–wide study of mouse gene function

William C. Skarnes, Barry Rosen, Anthony P. West, Manousos Koutsourakis, Wendy Bushell, Vivek Iyer, Alejandro O. Mujica, Mark Thomas, Jennifer Harrow, Tony Cox, David Jackson, Jessica Severin, Patrick Biggs, Jun Fu, Michael Nefedov, Pieter J. de Jong, A. Francis Stewart, Allan Bradley

Nature. Author manuscript; available in PMC 2013 Feb 14.

Published in final edited form as: Nature. 2011 Jun 15; 474(7351): 337–342. Published online 2011 Jun 15. doi: 10.1038/nature10163

PMCID:: PMC3572410

Abstract Article PDF–1.1M

Select item 348354618.

Cohesin regulates tissue-specific expression by stabilizing highly occupied cis-regulatory modules

Andre J. Faure, Dominic Schmidt, Stephen Watt, Petra C. Schwalie, Michael D. Wilson, Huiling Xu, Robert G. Ramsay, Duncan T. Odom, Paul Flicek

Genome Res. 2012 Nov; 22(11): 2163–2175. doi: 10.1101/gr.136507.111

PMCID:: PMC3483546

Abstract Article PDF–1.2M

Select item 334346319.

A unique role of cohesin-SA1 in gene regulation and development

Silvia Remeseiro, Ana Cuadrado, Gonzalo Gómez-López, David G Pisano, Ana Losada

EMBO J. 2012 May 2; 31(9): 2090–2102. Published online 2012 Mar 13. doi: 10.1038/emboj.2012.60

PMCID:: PMC3343463

Abstract Article PDF–2.9M

Select item 334345920.

Cohesin-SA1 deficiency drives aneuploidy and tumourigenesis in mice due to impaired replication of telomeres

Silvia Remeseiro, Ana Cuadrado, María Carretero, Paula Martínez, William C Drosopoulos, Marta Cañamero, Carl L Schildkraut, María A Blasco, Ana Losada

EMBO J. 2012 May 2; 31(9): 2076–2089. Published online 2012 Mar 13. doi: 10.1038/emboj.2012.11

PMCID:: PMC3343459

Abstract Article PDF–2.8M

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