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Select item 107633631.

Tissue-specific RNA Polymerase II promoter-proximal pause release and burst kinetics in a Drosophila embryonic patterning network

George Hunt, Roshan Vaid, Sergei Pirogov, Alexander Pfab, Christoph Ziegenhain, Rickard Sandberg, Johan Reimegård, Mattias Mannervik

Genome Biol. 2024; 25: 2. Published online 2024 Jan 2. doi: 10.1186/s13059-023-03135-0

PMCID:: PMC10763363

Abstract Article PDF–9.8M

Select item 104107492.

Using single-cell RNA sequencing to generate predictive cell-type-specific split-GAL4 reagents throughout development

Yu-Chieh David Chen, Yen-Chung Chen, Raghuvanshi Rajesh, Nathalie Shoji, Maisha Jacy, Haluk Lacin, Ted Erclik, Claude Desplan

Proc Natl Acad Sci U S A. 2023 Aug 8; 120(32): e2307451120. Published online 2023 Jul 31. doi: 10.1073/pnas.2307451120

PMCID:: PMC10410749

Abstract Article PDF–4.8M

Select item 102438763.

Transcriptional and Epigenetic Regulation of Temporal Patterning in Neural Progenitors

Alokananda Ray, Hailun Zhu, Andrew Ding, Xin Li

Dev Biol. Author manuscript; available in PMC 2023 Jun 6.

Published in final edited form as: Dev Biol. 2022 Jan; 481: 116–128. Published online 2021 Oct 16. doi: 10.1016/j.ydbio.2021.10.006

PMCID:: PMC10243876

Abstract Article PDF–1.2M

Select item 101932654.

Coordinated control of neuronal differentiation and wiring by sustained transcription factors

Mehmet Neset Özel, Claudia Skok Gibbs, Isabel Holguera, Mennah Soliman, Richard Bonneau, Claude Desplan

Science. Author manuscript; available in PMC 2023 Jun 23.

Published in final edited form as: Science. 2022 Dec 23; 378(6626): eadd1884. Published online 2022 Dec 23. doi: 10.1126/science.add1884

PMCID:: PMC10193265

Abstract Article PDF–2.8M

Select item 96356445.

Enteric bacterial infection in Drosophila induces whole-body alterations in metabolic gene expression independently of the immune deficiency signaling pathway

Rujuta Deshpande, Byoungchun Lee, Savraj S Grewal

G3 (Bethesda) 2022 Nov; 12(11): jkac163. Published online 2022 Jul 4. doi: 10.1093/g3journal/jkac163

PMCID:: PMC9635644

Abstract Article PDF–2.2M

Select item 95443506.

Dachshund acts with Abdominal‐B to trigger programmed cell death in the Drosophila central nervous system at the frontiers of Abd‐B expression

Luis Clarembaux‐Badell, Pablo Baladrón‐de‐Juan, Hugo Gabilondo, Irene Rubio‐Ferrera, Irene Millán, Carlos Estella, Félix S. Valverde‐Ortega, Ignacio Monedero Cobeta, Stefan Thor, Jonathan Benito‐Sipos

Dev Neurobiol. 2022 Sep; 82(6): 495–504. Published online 2022 Jul 10. doi: 10.1002/dneu.22894

PMCID:: PMC9544350

Abstract Article PDF–4.1M

Select item 94271157.

A Notch-dependent transcriptional mechanism controls expression of temporal patterning factors in Drosophila medulla

Alokananda Ray, Xin Li

eLife. 2022; 11: e75879. Published online 2022 Aug 30. doi: 10.7554/eLife.75879

PMCID:: PMC9427115

Abstract Article PDF–32M

Select item 93316888.

Trichomes on female reproductive tract: rapid diversification and underlying gene regulatory network in Drosophila suzukii and its related species

Kentaro M. Tanaka, Kanoko Takahashi, Gavin Rice, Mark Rebeiz, Yoshitaka Kamimura, Aya Takahashi

BMC Ecol Evol. 2022; 22: 93. Published online 2022 Jul 28. doi: 10.1186/s12862-022-02046-1

PMCID:: PMC9331688

Abstract Article PDF–2.9M

Select item 92396809.

An expanded toolkit for Drosophila gene tagging using synthesized homology donor constructs for CRISPR-mediated homologous recombination

Oguz Kanca, Jonathan Zirin, Yanhui Hu, Burak Tepe, Debdeep Dutta, Wen-Wen Lin, Liwen Ma, Ming Ge, Zhongyuan Zuo, Lu-Ping Liu, Robert W Levis, Norbert Perrimon, Hugo J Bellen

eLife. 2022; 11: e76077. Published online 2022 Jun 20. doi: 10.7554/eLife.76077

PMCID:: PMC9239680

Abstract Article PDF–1.2M

Select item 911640310.

Cutting edge technologies expose the temporal regulation of neurogenesis in the Drosophila nervous system

Makoto Sato, Takumi Suzuki

Fly (Austin) 2022; 16(1): 222–232. Published online 2022 May 13. doi: 10.1080/19336934.2022.2073158

PMCID:: PMC9116403

Abstract Article PDF–889K

Select item 891370011.

A comprehensive temporal patterning gene network in Drosophila medulla neuroblasts revealed by single-cell RNA sequencing

Hailun Zhu, Sihai Dave Zhao, Alokananda Ray, Yu Zhang, Xin Li

Nat Commun. 2022; 13: 1247. Published online 2022 Mar 10. doi: 10.1038/s41467-022-28915-3

PMCID:: PMC8913700

Abstract Article PDF–11M

Select item 850437312.

Influence of Sox protein SUMOylation on neural development and regeneration

Kun-Che Chang

Neural Regen Res. 2022 Mar; 17(3): 477–481. Published online 2021 Aug 4. doi: 10.4103/1673-5374.320968

PMCID:: PMC8504373

Abstract Article PDF–826K

Select item 823631513.

Dense and pleiotropic regulatory information in a developmental enhancer

Timothy Fuqua, Jeff Jordan, Maria Elize van Breugel, Aliaksandr Halavatyi, Christian Tischer, Peter Polidoro, Namiko Abe, Albert Tsai, Richard S. Mann, David L. Stern, Justin Crocker

Nature. Author manuscript; available in PMC 2021 Jun 27.

Published in final edited form as: Nature. 2020 Nov; 587(7833): 235–239. Published online 2020 Oct 14. doi: 10.1038/s41586-020-2816-5

PMCID:: PMC8236315

Abstract Article PDF–4.5M

Select item 813928714.

The molecular landscape of neural differentiation in the developing Drosophila brain revealed by targeted scRNA-seq and multi-informatic analysis

Nigel S. Michki, Ye Li, Kayvon Sanjasaz, Yimeng Zhao, Fred Y. Shen, Logan A. Walker, Wenjia Cao, Cheng-Yu Lee, Dawen Cai

Cell Rep. Author manuscript; available in PMC 2021 May 21.

Published in final edited form as: Cell Rep. 2021 Apr 27; 35(4): 109039. doi: 10.1016/j.celrep.2021.109039

PMCID:: PMC8139287

Abstract Article PDF–1.6M

Select item 806858615.

Enhancer redundancy in development and disease

Evgeny Z. Kvon, Rachel Waymack, Mario G. Elabd, Zeba Wunderlich

Nat Rev Genet. Author manuscript; available in PMC 2021 Nov 1.

Published in final edited form as: Nat Rev Genet. 2021 May; 22(5): 324–336. Published online 2021 Jan 12. doi: 10.1038/s41576-020-00311-x

Correction in:: Nat Rev Genet. 2021 Apr 13

PMCID:: PMC8068586

Abstract Article PDF–1.6M

Select item 804956416.

New regulators of Drosophila eye development identified from temporal transcriptome changes

Manon Quiquand, Gerard Rimesso, Nan Qiao, Shengbao Suo, Chunyu Zhao, Matthew Slattery, Kevin P White, Jackie J Han, Nicholas E Baker

Genetics. 2021 Apr; 217(4): iyab007. Published online 2021 Jan 23. doi: 10.1093/genetics/iyab007

PMCID:: PMC8049564

Abstract Article PDF–1.3M

Select item 803507617.

Independence of chromatin conformation and gene regulation during Drosophila dorsoventral patterning

Elizabeth Ing-Simmons, Roshan Vaid, Xin Yang Bing, Michael Levine, Mattias Mannervik, Juan M. Vaquerizas

Nat Genet. 2021; 53(4): 487–499. Published online 2021 Apr 1. doi: 10.1038/s41588-021-00799-x

PMCID:: PMC8035076

Abstract Article PDF–12M

Select item 790962918.

Cross-species identification of PIP5K1-, splicing- and ubiquitin-related pathways as potential targets for RB1-deficient cells

Andrey A. Parkhitko, Arashdeep Singh, Sharon Hsieh, Yanhui Hu, Richard Binari, Christopher J. Lord, Sridhar Hannenhalli, Colm J. Ryan, Norbert Perrimon

PLoS Genet. 2021 Feb; 17(2): e1009354. Published online 2021 Feb 16. doi: 10.1371/journal.pgen.1009354

PMCID:: PMC7909629

Abstract Article PDF–4.6M

Select item 783769819.

A transcriptomic taxonomy of Drosophila circadian neurons around the clock

Dingbang Ma, Dariusz Przybylski, Katharine C Abruzzi, Matthias Schlichting, Qunlong Li, Xi Long, Michael Rosbash

eLife. 2021; 10: e63056. Published online 2021 Jan 13. doi: 10.7554/eLife.63056

PMCID:: PMC7837698

Abstract Article PDF–3.2M

Select item 747962020.

Single-cell transcriptome maps of myeloid blood cell lineages in Drosophila

Bumsik Cho, Sang-Ho Yoon, Daewon Lee, Ferdinand Koranteng, Sudhir Gopal Tattikota, Nuri Cha, Mingyu Shin, Hobin Do, Yanhui Hu, Sue Young Oh, Daehan Lee, A. Vipin Menon, Seok Jun Moon, Norbert Perrimon, Jin-Wu Nam, Jiwon Shim

Nat Commun. 2020; 11: 4483. Published online 2020 Sep 8. doi: 10.1038/s41467-020-18135-y