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Select item 96658851.

Mapping Brain Gene Coexpression in Daytime Transcriptomes Unveils Diurnal Molecular Networks and Deciphers Perturbation Gene Signatures

Nan Wang, Peter Langfelder, Matthew Stricos, Lalini Ramanathan, Jeffrey B. Richman, Raymond Vaca, Mary Plascencia, Xiaofeng Gu, Shasha Zhang, T. Katherine Tamai, Liguo Zhang, Fuying Gao, Koliane Ouk, Xiang Lu, Leonya Ivanov, Tom Vogt, Qing Richard Lu, A. Jennifer Morton, Christopher Colwell, Jeffrey S. Aaronson, Jim Rosinski, Steve Horvath, X. William Yang

Neuron. Author manuscript; available in PMC 2023 Oct 19.

Published in final edited form as: Neuron. 2022 Oct 19; 110(20): 3318–3338.e9. doi: 10.1016/j.neuron.2022.09.028

PMCID:: PMC9665885

Abstract Article PDF–4.5M

Select item 56450822.

Spatio-temporal profile of postynaptic interactomes integrates components of complex brain disorders

Jing Li, Wangshu Zhang, Hui Yang, Daniel P. Howrigan, Brent Wilkinson, Tade Souaiaia, Oleg V. Evgrafov, Giulio Genovese, Veronica A. Clementel, Jennifer C. Tudor, Ted Abel, James A. Knowles, Benjamin M. Neale, Kai Wang, Fengzhu Sun, Marcelo P. Coba

Nat Neurosci. Author manuscript; available in PMC 2018 Aug 1.

Published in final edited form as: Nat Neurosci. 2017 Aug; 20(8): 1150–1161. Published online 2017 Jun 26. doi: 10.1038/nn.4594

PMCID:: PMC5645082

Abstract Article PDF–2.3M

Select item 50274153.

MRG15 is required for pre-mRNA splicing and spermatogenesis

Naoki Iwamori, Kaoru Tominaga, Tetsuya Sato, Kevin Riehle, Tokuko Iwamori, Yasuyuki Ohkawa, Cristian Coarfa, Etsuro Ono, Martin M. Matzuk

Proc Natl Acad Sci U S A. 2016 Sep 13; 113(37): E5408–E5415. Published online 2016 Aug 29. doi: 10.1073/pnas.1611995113

PMCID:: PMC5027415

Abstract Article PDF–1.8M

Select item 48871064.

The TIP60 complex regulates bivalent chromatin recognition by 53BP1 through direct H4K20me binding and H2AK15 acetylation

Karine Jacquet, Amélie Fradet-Turcotte, Nikita Avvakumov, Jean-Philippe Lambert, Céline Roques, Raj K. Pandita, Eric Paquet, Pauline Herst, Anne-Claude Gingras, Tej K. Pandita, Gaëlle Legube, Yannick Doyon, Daniel Durocher, Jacques Côté

Mol Cell. Author manuscript; available in PMC 2016 May 31.

Published in final edited form as: Mol Cell. 2016 May 5; 62(3): 409–421. doi: 10.1016/j.molcel.2016.03.031

PMCID:: PMC4887106

Abstract Article PDF–1.4M

Select item 39453695.

Histone Deacetylase 2 (HDAC2) Protein-dependent Deacetylation of Mortality Factor 4-like 1 (MORF4L1) Protein Enhances Its Homodimerization

Yan Chen, Jin Li, Sarah Dunn, Sheng Xiong, Wei Chen, Yutong Zhao, Bill B. Chen, Rama K. Mallampalli, Chunbin Zou

J Biol Chem. 2014 Mar 7; 289(10): 7092–7098. Published online 2014 Jan 22. doi: 10.1074/jbc.M113.527507

Correction in:: J Biol Chem. 2014 Sep 5; 289(36): 24943.

PMCID:: PMC3945369

Abstract Article PDF–818K

Select item 38431116.

Hdac6 regulates Tip60-p400 function in stem cells

Poshen B Chen, Jui-Hung Hung, Taylor L Hickman, Andrew H Coles, James F Carey, Zhiping Weng, Feixia Chu, Thomas G Fazzio

eLife. 2013; 2: e01557. Published online 2013 Dec 3. doi: 10.7554/eLife.01557

PMCID:: PMC3843111

Abstract Article PDF–5.7M

Select item 37461987.

A direct physical interaction between Nanog and Sox2 regulates embryonic stem cell self-renewal

Alessia Gagliardi, Nicholas P Mullin, Zi Ying Tan, Douglas Colby, Anastasia I Kousa, Florian Halbritter, Jason T Weiss, Anastasia Felker, Karel Bezstarosti, Rebecca Favaro, Jeroen Demmers, Silvia K Nicolis, Simon R Tomlinson, Raymond A Poot, Ian Chambers

EMBO J. 2013 Aug 14; 32(16): 2231–2247. Published online 2013 Jul 26. doi: 10.1038/emboj.2013.161

PMCID:: PMC3746198

Abstract Article PDF–2.9M

Select item 35683728.

Inactivation of the microRNA-183/96/182 cluster results in syndromic retinal degeneration

Stephen Lumayag, Caroline E. Haldin, Nicola J. Corbett, Karl J. Wahlin, Colleen Cowan, Sanja Turturro, Peter E. Larsen, Beatrix Kovacs, P. Dane Witmer, David Valle, Donald J. Zack, Daniel A. Nicholson, Shunbin Xu

Proc Natl Acad Sci U S A. 2013 Feb 5; 110(6): E507–E516. Published online 2013 Jan 22. doi: 10.1073/pnas.1212655110

PMCID:: PMC3568372

Abstract Article PDF–2.1M

Select item 33221569.

PRC1 and PRC2 Are Not Required for Targeting of H2A.Z to Developmental Genes in Embryonic Stem Cells

Robert S. Illingworth, Catherine H. Botting, Graeme R. Grimes, Wendy A. Bickmore, Ragnhild Eskeland

PLoS One. 2012; 7(4): e34848. Published online 2012 Apr 9. doi: 10.1371/journal.pone.0034848

PMCID:: PMC3322156

Abstract Article PDF–1.5M

Select item 328934710.

Vezf1 protein binding sites genome-wide are associated with pausing of elongating RNA polymerase II

Humaira Gowher, Kevin Brick, R. Daniel Camerini-Otero, Gary Felsenfeld

Proc Natl Acad Sci U S A. 2012 Feb 14; 109(7): 2370–2375. Published online 2012 Jan 30. doi: 10.1073/pnas.1121538109

PMCID:: PMC3289347

Abstract Article PDF–954K

Select item 324909411.

Loss of the Methyl Lysine Effector Protein PHF20 Impacts the Expression of Genes Regulated by the Lysine Acetyltransferase MOF

Aimee I. Badeaux, Yanzhong Yang, Kim Cardenas, Vidyasiri Vemulapalli, Kaifu Chen, Donna Kusewitt, Ellen Richie, Wei Li, Mark T. Bedford

J Biol Chem. 2012 Jan 2; 287(1): 429–437. Published online 2011 Nov 9. doi: 10.1074/jbc.M111.271163

PMCID:: PMC3249094

Abstract Article PDF–2.1M

Select item 317805912.

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas

Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042

PMCID:: PMC3178059

Abstract Article PDF–1.0M

Select item 313080013.

Chfr and RNF8 synergistically regulate ATM activation

Jiaxue Wu, Yibin Chen, Lin-Yu Lu, Yipin Wu, Michelle T. Paulsen, Mats Ljungman, David O Ferguson, Xiaochun Yu

Nat Struct Mol Biol. Author manuscript; available in PMC 2012 Jan 1.

Published in final edited form as: Nat Struct Mol Biol. 2011 Jul; 18(7): 761–768. Published online 2011 Jun 26. doi: 10.1038/nsmb.2078

PMCID:: PMC3130800

Abstract Article PDF–2.4M

Select item 313062014.

Loss of the chromatin regulator MRG15 limits neural stem/progenitor cell proliferation via increased expression of the p21 Cdk inhibitor

Meizhen Chen, Olivia M. Pereira-Smith, Kaoru Tominaga

Stem Cell Res. Author manuscript; available in PMC 2012 Jul 1.

Published in final edited form as: Stem Cell Res. 2011 Jul; 7(1): 75–88. Published online 2011 Apr 25. doi: 10.1016/j.scr.2011.04.002

PMCID:: PMC3130620

Abstract Article PDF–2.0M

Select item 311015115.

A Systems Approach Reveals that the Myogenesis Genome Network Is Regulated by the Transcriptional Repressor RP58

Shigetoshi Yokoyama, Yoshiaki Ito, Hiroe Ueno-Kudoh, Hirohito Shimizu, Kenta Uchibe, Sonia Albini, Kazuhiko Mitsuoka, Shigeru Miyaki, Minako Kiso, Akane Nagai, Tomohiro Hikata, Tadahiro Osada, Noritsugu Fukuda, Satoshi Yamashita, Daisuke Harada, Valeria Mezzano, Masataka Kasai, Pier Lorenzo Puri, Yoshihide Hayashizaki, Haruo Okado, Megumi Hashimoto, Hiroshi Asahara

Dev Cell. Author manuscript; available in PMC 2011 Jun 7.

Published in final edited form as: Dev Cell. 2009 Dec; 17(6): 836–848. doi: 10.1016/j.devcel.2009.10.011

PMCID:: PMC3110151

Abstract Article PDF–2.0M

Select item 310228816.

KDM5B regulates embryonic stem cell self-renewal and represses cryptic intragenic transcription

Liangqi Xie, Carl Pelz, Wensi Wang, Amir Bashar, Olga Varlamova, Sean Shadle, Soren Impey

EMBO J. 2011 Apr 20; 30(8): 1473–1484. Published online 2011 Mar 29. doi: 10.1038/emboj.2011.91

PMCID:: PMC3102288

Abstract Article PDF–1.0M

Select item 301984817.

A Novel Mammalian Complex Containing Sin3B Mitigates Histone Acetylation and RNA Polymerase II Progression within Transcribed Loci

Petar Jelinic, Jessica Pellegrino, Gregory David

Mol Cell Biol. 2011 Jan; 31(1): 54–62. Published online 2010 Nov 1. doi: 10.1128/MCB.00840-10

PMCID:: PMC3019848

Abstract Article PDF–1010K

Select item 291344818.

MRG15, a component of HAT and HDAC complexes, is essential for proliferation and differentiation of neural precursor cells

Meizhen Chen, Masumi Takano-Maruyama, Olivia M. Pereira-Smith, Gary O. Gaufo, Kaoru Tominaga

J Neurosci Res. Author manuscript; available in PMC 2010 Aug 2.

Published in final edited form as: J Neurosci Res. 2009 May 15; 87(7): 1522–1531. doi: 10.1002/jnr.21976

PMCID:: PMC2913448

Abstract Article PDF–2.2M

Select item 255627019.

Large-scale gene trapping in C57BL/6N mouse embryonic stem cells

Gwenn M. Hansen, Diane C. Markesich, Michael B. Burnett, Qichao Zhu, Karen M. Dionne, Lizabeth J. Richter, Richard H. Finnell, Arthur T. Sands, Brian P. Zambrowicz, Alejandro Abuin

Genome Res. 2008 Oct; 18(10): 1670–1679. doi: 10.1101/gr.078352.108

PMCID:: PMC2556270

Abstract Article PDF–493K

Select item 213244520.

Mrg15 null and heterozygous mouse embryonic fibroblasts exhibit DNA repair defects post exposure to gamma ionizing radiation

Sandra N. Garcia, Bhakti M. Kirtane, Andrej J. Podlutsky, Olivia M. Pereira-Smith, Kaoru Tominaga

FEBS Lett. Author manuscript; available in PMC 2008 Nov 13.

Published in final edited form as: FEBS Lett. 2007 Nov 13; 581(27): 5275–5281. Published online 2007 Oct 18. doi: 10.1016/j.febslet.2007.10.017

PMCID:: PMC2132445

Abstract Article PDF–974K

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