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Select item 97332791.

The genomic basis of copper tolerance in Drosophila is shaped by a complex interplay of regulatory and environmental factors

Llewellyn Green, Marta Coronado-Zamora, Santiago Radío, Gabriel E. Rech, Judit Salces-Ortiz, Josefa González

BMC Biol. 2022; 20: 275. Published online 2022 Dec 8. doi: 10.1186/s12915-022-01479-w

PMCID:: PMC9733279

Abstract Article PDF–3.8M

Select item 94046462.

A single-cell transcriptomic atlas of complete insect nervous systems across multiple life stages

Marc Corrales, Benjamin T. Cocanougher, Andrea B. Kohn, Jason D. Wittenbach, Xi S. Long, Andrew Lemire, Albert Cardona, Robert H. Singer, Leonid L. Moroz, Marta Zlatic

Neural Dev. 2022; 17: 8. Published online 2022 Aug 24. doi: 10.1186/s13064-022-00164-6

Correction in:: Neural Dev. 2022; 17: 11.

PMCID:: PMC9404646

Abstract Article PDF–4.1M

Select item 89833903.

Drosophila functional screening of de novo variants in autism uncovers damaging variants and facilitates discovery of rare neurodevelopmental diseases

Paul C. Marcogliese, Samantha L. Deal, Jonathan Andrews, J. Michael Harnish, V. Hemanjani Bhavana, Hillary K. Graves, Sharayu Jangam, Xi Luo, Ning Liu, Danqing Bei, Yu-Hsin Chao, Brooke Hull, Pei-Tseng Lee, Hongling Pan, Pradnya Bhadane, Mei-Chu Huang, Colleen M. Longley, Hsiao-Tuan Chao, Hyung-lok Chung, Nele A. Haelterman, Oguz Kanca, Sathiya N. Manivannan, Linda Z. Rossetti, Ryan J. German, Amanda Gerard, Eva Maria Christina Schwaibold, Sarah Fehr, Renzo Guerrini, Annalisa Vetro, Eleina England, Chaya N. Murali, Tahsin Stefan Barakat, Marieke F. van Dooren, Martina Wilke, Marjon van Slegtenhorst, Gaetan Lesca, Isabelle Sabatier, Nicolas Chatron, Catherine A. Brownstein, Jill A. Madden, Pankaj B. Agrawal, Boris Keren, Thomas Courtin, Laurence Perrin, Melanie Brugger, Timo Roser, Steffen Leiz, Frederic Tran Mau-Them, Julian Delanne, Elena Sukarova-Angelovska, Slavica Trajkova, Erik Rosenhahn, Vincent Strehlow, Konrad Platzer, Roberto Keller, Lisa Pavinato, Alfredo Brusco, Jill A. Rosenfeld, Ronit Marom, Michael F. Wangler, Shinya Yamamoto

Cell Rep. Author manuscript; available in PMC 2022 Apr 6.

Published in final edited form as: Cell Rep. 2022 Mar 15; 38(11): 110517. doi: 10.1016/j.celrep.2022.110517

PMCID:: PMC8983390

Abstract Article PDF–2.9M

Select item 69615784.

CRISPR-based modular assembly of a UAS-cDNA/ORF plasmid library for more than 5500 Drosophila genes conserved in humans

Ping Wei, Wen Xue, Yun Zhao, Guang Ning, Jiwu Wang

Genome Res. 2020 Jan; 30(1): 95–106. doi: 10.1101/gr.250811.119

PMCID:: PMC6961578

Abstract Article PDF–3.6M

Select item 58214005.

Drosophila Gr64e mediates fatty acid sensing via the phospholipase C pathway

Hyeyon Kim, Haein Kim, Jae Young Kwon, Jeong Taeg Seo, Dong Min Shin, Seok Jun Moon

PLoS Genet. 2018 Feb; 14(2): e1007229. Published online 2018 Feb 8. doi: 10.1371/journal.pgen.1007229

PMCID:: PMC5821400

Abstract Article PDF–2.6M

Select item 57078056.

Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species

Piero Sanfilippo, Jiayu Wen, Eric C. Lai

Genome Biol. 2017; 18: 229. Published online 2017 Nov 30. doi: 10.1186/s13059-017-1358-0

PMCID:: PMC5707805

Abstract Article PDF–3.2M

Select item 56890027.

Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster

Xiaochuan Liu, Jaime Freitas, Dinghai Zheng, Marta S. Oliveira, Mainul Hoque, Torcato Martins, Telmo Henriques, Bin Tian, Alexandra Moreira

RNA. 2017 Dec; 23(12): 1807–1816. doi: 10.1261/rna.062661.117

PMCID:: PMC5689002

Abstract Article PDF–4.0M

Select item 51268648.

Latitudinal clines in gene expression and cis-regulatory element variation in Drosophila melanogaster

Punita Juneja, Andrew Quinn, Francis M. Jiggins

BMC Genomics. 2016; 17: 981. Published online 2016 Nov 28. doi: 10.1186/s12864-016-3333-7

PMCID:: PMC5126864

Abstract Article PDF–1.1M

Select item 48259559.

Sir2 Acts through Hepatocyte Nuclear Factor 4 to maintain insulin Signaling and Metabolic Homeostasis in Drosophila

Rebecca A. S. Palu, Carl S. Thummel

PLoS Genet. 2016 Apr; 12(4): e1005978. Published online 2016 Apr 8. doi: 10.1371/journal.pgen.1005978

PMCID:: PMC4825955

Abstract Article PDF–1.8M

Select item 478811610.

Hedgehog Signaling Strength Is Orchestrated by the mir-310 Cluster of MicroRNAs in Response to Diet

Ibrahim Ömer Çiçek, Samir Karaca, Marko Brankatschk, Suzanne Eaton, Henning Urlaub, Halyna R. Shcherbata

Genetics. 2016 Mar; 202(3): 1167–1183. Published online 2016 Jan 22. doi: 10.1534/genetics.115.185371

PMCID:: PMC4788116

Abstract Article PDF–4.7M

Select item 452833011.

Gene Model Annotations for Drosophila melanogaster: The Rule-Benders

Madeline A. Crosby, L. Sian Gramates, Gilberto dos Santos, Beverley B. Matthews, Susan E. St. Pierre, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, David B. Emmert, Susan M. Russo, William M. Gelbart, the FlyBase Consortium

G3 (Bethesda) 2015 Aug; 5(8): 1737–1749. Published online 2015 Jun 24. doi: 10.1534/g3.115.018937

PMCID:: PMC4528330

Abstract Article PDF–2.2M

Select item 452832912.

Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data

Beverley B. Matthews, Gilberto dos Santos, Madeline A. Crosby, David B. Emmert, Susan E. St. Pierre, L. Sian Gramates, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, Victor Strelets, Susan M. Russo, William M. Gelbart, the FlyBase Consortium

G3 (Bethesda) 2015 Aug; 5(8): 1721–1736. Published online 2015 Jun 24. doi: 10.1534/g3.115.018929

PMCID:: PMC4528329

Abstract Article PDF–4.9M

Select item 435288713.

The Release 6 reference sequence of the Drosophila melanogaster genome

Roger A. Hoskins, Joseph W. Carlson, Kenneth H. Wan, Soo Park, Ivonne Mendez, Samuel E. Galle, Benjamin W. Booth, Barret D. Pfeiffer, Reed A. George, Robert Svirskas, Martin Krzywinski, Jacqueline Schein, Maria Carmela Accardo, Elisabetta Damia, Giovanni Messina, María Méndez-Lago, Beatriz de Pablos, Olga V. Demakova, Evgeniya N. Andreyeva, Lidiya V. Boldyreva, Marco Marra, A. Bernardo Carvalho, Patrizio Dimitri, Alfredo Villasante, Igor F. Zhimulev, Gerald M. Rubin, Gary H. Karpen, Susan E. Celniker

Genome Res. 2015 Mar; 25(3): 445–458. doi: 10.1101/gr.185579.114

PMCID:: PMC4352887

Abstract Article PDF–1022K

Select item 434559414.

Gustatory and metabolic perception of nutrient stress in Drosophila

Nancy J. Linford, Jennifer Ro, Brian Y. Chung, Scott D. Pletcher

Proc Natl Acad Sci U S A. 2015 Feb 24; 112(8): 2587–2592. Published online 2015 Feb 9. doi: 10.1073/pnas.1401501112

PMCID:: PMC4345594

Abstract Article PDF–1.0M

Select item 427152715.

Phylostratigraphic Bias Creates Spurious Patterns of Genome Evolution

Bryan A. Moyers, Jianzhi Zhang

Mol Biol Evol. 2015 Jan 1; 32(1): 258–267. Published online 2014 Oct 13. doi: 10.1093/molbev/msu286

Correction in:: Mol Biol Evol. 2016 Nov; 33(11): 3031.

PMCID:: PMC4271527

Abstract Article PDF–618K

Select item 406926316.

Dietary switch reveals fast coordinated gene expression changes in Drosophila melanogaster

Rachel Whitaker, M. Pilar Gil, Feifei Ding, Marc Tatar, Stephen L. Helfand, Nicola Neretti

Aging (Albany NY) 2014 May; 6(5): 355–368. Published online 2014 May 14. doi: 10.18632/aging.100662

PMCID:: PMC4069263

Abstract Article PDF–2.4M

Select item 378979617.

Comparing Zinc Finger Nucleases and Transcription Activator-Like Effector Nucleases for Gene Targeting in Drosophila

Kelly J. Beumer, Jonathan K. Trautman, Michelle Christian, Timothy J. Dahlem, Cathleen M. Lake, R. Scott Hawley, David J. Grunwald, Daniel F. Voytas, Dana Carroll

G3 (Bethesda) 2013 Oct; 3(10): 1717–1725. Published online 2013 Oct 1. doi: 10.1534/g3.113.007260

PMCID:: PMC3789796

Abstract Article PDF–922K

Select item 367032118.

Using natural variation in Drosophila to discover previously unknown endoplasmic reticulum stress genes

Clement Y. Chow, Mariana F. Wolfner, Andrew G. Clark

Proc Natl Acad Sci U S A. 2013 May 28; 110(22): 9013–9018. Published online 2013 May 10. doi: 10.1073/pnas.1307125110

PMCID:: PMC3670321

Abstract Article PDF–387K

Select item 364222019.

Proteomic Characterization of Inbreeding-Related Cold Sensitivity in Drosophila melanogaster

Cornelis J. Vermeulen, Kamilla S. Pedersen, Hans C. Beck, Jørgen Petersen, Kristina Kirilova Gagalova, Volker Loeschcke

PLoS One. 2013; 8(5): e62680. Published online 2013 May 2. doi: 10.1371/journal.pone.0062680

PMCID:: PMC3642220

Abstract Article PDF–1.1M

Select item 353067720.

High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression

Philippe Batut, Alexander Dobin, Charles Plessy, Piero Carninci, Thomas R. Gingeras

Genome Res. 2013 Jan; 23(1): 169–180. doi: 10.1101/gr.139618.112

PMCID:: PMC3530677

Abstract Article PDF–1.5M

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