PMC Links for GEO Profiles (Select 14655633) - PMC

Hong-Wen Tang, Kerstin Spirohn, Yanhui Hu, Tong Hao, István A. Kovács, Yue Gao, Richard Binari, Donghui Yang-Zhou, Kenneth H. Wan, Joel S. Bader, Dawit Balcha, Wenting Bian, Benjamin W. Booth, Atina G. Coté, Steffi de Rouck, Alice Desbuleux, Kah Yong Goh, Dae-Kyum Kim, Jennifer J. Knapp, Wen Xing Lee, Irma Lemmens, Cathleen Li, Mian Li, Roujia Li, Hyobin Julianne Lim, Yifang Liu, Katja Luck, Dylan Markey, Carl Pollis, Sudharshan Rangarajan, Jonathan Rodiger, Sadie Schlabach, Yun Shen, Dayag Sheykhkarimli, Bridget TeeKing, Frederick P. Roth, Jan Tavernier, Michael A. Calderwood, David E. Hill, Susan E. Celniker, Marc Vidal, Norbert Perrimon, Stephanie E. Mohr

Nat Commun. 2023; 14: 2162. Published online 2023 Apr 15. doi: 10.1038/s41467-023-37876-0

PMCID:: PMC10105736

Abstract Article PDF–3.2M

Select item 92265434.

CRISPR/Cas13 effectors have differing extents of off-target effects that limit their utility in eukaryotic cells

Yuxi Ai, Dongming Liang, Jeremy E Wilusz

Nucleic Acids Res. 2022 Jun 24; 50(11): e65. Published online 2022 Mar 4. doi: 10.1093/nar/gkac159

PMCID:: PMC9226543

Abstract Article PDF–4.3M

Select item 86644865.

Genome-wide phenotypic RNAi screen in the Drosophila wing: phenotypic description of functional classes

Ana López-Varea, Patricia Vega-Cuesta, Ana Ruiz-Gómez, Cristina M Ostalé, Cristina Molnar, Covadonga F Hevia, Mercedes Martín, Maria F Organista, Jesus de Celis, Joaquín Culí, Nuria Esteban, Jose F de Celis

G3 (Bethesda) 2021 Dec; 11(12): jkab349. Published online 2021 Oct 2. doi: 10.1093/g3journal/jkab349

PMCID:: PMC8664486

Abstract Article PDF–3.1M

Select item 85221706.

Use of circular RNAs as markers of readthrough transcription to identify factors regulating cleavage/polyadenylation events

Dongming Liang, Deirdre C. Tatomer, Jeremy E. Wilusz

Methods. Author manuscript; available in PMC 2022 Dec 1.

Published in final edited form as: Methods. 2021 Dec; 196: 121–128. Published online 2021 Apr 18. doi: 10.1016/j.ymeth.2021.04.012

PMCID:: PMC8522170

Abstract Article PDF–1.1M

Select item 81840097.

The Exon Junction Complex and intron removal prevent re-splicing of mRNA

Brian Joseph, Eric C. Lai

PLoS Genet. 2021 May; 17(5): e1009563. Published online 2021 May 25. doi: 10.1371/journal.pgen.1009563

PMCID:: PMC8184009

Abstract Article PDF–2.4M

Select item 74560928.

A field-based quantitative analysis of sublethal effects of air pollution on pollinators

Geetha G. Thimmegowda, Susan Mullen, Katie Sottilare, Ankit Sharma, Saptashi Soham Mohanta, Axel Brockmann, Perundurai S. Dhandapany, Shannon B. Olsson

Proc Natl Acad Sci U S A. 2020 Aug 25; 117(34): 20653–20661. Published online 2020 Aug 10. doi: 10.1073/pnas.2009074117

PMCID:: PMC7456092

Abstract Article PDF–1.4M

Select item 67940899.

The yellow gene influences Drosophila male mating success through sex comb melanization

Jonathan H Massey, Daayun Chung, Igor Siwanowicz, David L Stern, Patricia J Wittkopp

eLife. 2019; 8: e49388. Published online 2019 Oct 15. doi: 10.7554/eLife.49388

PMCID:: PMC6794089

Abstract Article PDF–5.3M

Select item 600407210.

A length-dependent evolutionarily conserved pathway controls nuclear export of circular RNAs

Chuan Huang, Dongming Liang, Deirdre C. Tatomer, Jeremy E. Wilusz

Genes Dev. 2018 May 1; 32(9-10): 639–644. doi: 10.1101/gad.314856.118

PMCID:: PMC6004072

Abstract Article PDF–678K

Select item 572868611.

The output of protein-coding genes shifts to circular RNAs when the pre-mRNA processing machinery is limiting

Dongming Liang, Deirdre C. Tatomer, Zheng Luo, Huang Wu, Li Yang, Ling-Ling Chen, Sara Cherry, Jeremy E. Wilusz

Mol Cell. Author manuscript; available in PMC 2018 Dec 7.

Published in final edited form as: Mol Cell. 2017 Dec 7; 68(5): 940–954.e3. Published online 2017 Nov 22. doi: 10.1016/j.molcel.2017.10.034

PMCID:: PMC5728686

Abstract Article PDF–3.1M

Select item 570780512.

Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species

Piero Sanfilippo, Jiayu Wen, Eric C. Lai

Genome Biol. 2017; 18: 229. Published online 2017 Nov 30. doi: 10.1186/s13059-017-1358-0

PMCID:: PMC5707805

Abstract Article PDF–3.2M

Select item 568900213.

Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster

Xiaochuan Liu, Jaime Freitas, Dinghai Zheng, Marta S. Oliveira, Mainul Hoque, Torcato Martins, Telmo Henriques, Bin Tian, Alexandra Moreira

RNA. 2017 Dec; 23(12): 1807–1816. doi: 10.1261/rna.062661.117

PMCID:: PMC5689002

Abstract Article PDF–4.0M

Select item 498005914.

Phenotypic Plasticity through Transcriptional Regulation of the Evolutionary Hotspot Gene tan in Drosophila melanogaster

Jean-Michel Gibert, Emmanuèle Mouchel-Vielh, Sandra De Castro, Frédérique Peronnet

PLoS Genet. 2016 Aug; 12(8): e1006218. Published online 2016 Aug 10. doi: 10.1371/journal.pgen.1006218

PMCID:: PMC4980059

Abstract Article PDF–15M

Select item 461798015.

Combinatorial control of Drosophila circular RNA expression by intronic repeats, hnRNPs, and SR proteins

Marianne C. Kramer, Dongming Liang, Deirdre C. Tatomer, Beth Gold, Zachary M. March, Sara Cherry, Jeremy E. Wilusz

Genes Dev. 2015 Oct 15; 29(20): 2168–2182. doi: 10.1101/gad.270421.115

PMCID:: PMC4617980

Abstract Article PDF–1.7M

Select item 452833016.

Gene Model Annotations for Drosophila melanogaster: The Rule-Benders

Madeline A. Crosby, L. Sian Gramates, Gilberto dos Santos, Beverley B. Matthews, Susan E. St. Pierre, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, David B. Emmert, Susan M. Russo, William M. Gelbart, the FlyBase Consortium

G3 (Bethesda) 2015 Aug; 5(8): 1737–1749. Published online 2015 Jun 24. doi: 10.1534/g3.115.018937

PMCID:: PMC4528330

Abstract Article PDF–2.2M

Select item 452832917.

Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data

Beverley B. Matthews, Gilberto dos Santos, Madeline A. Crosby, David B. Emmert, Susan E. St. Pierre, L. Sian Gramates, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, Victor Strelets, Susan M. Russo, William M. Gelbart, the FlyBase Consortium

G3 (Bethesda) 2015 Aug; 5(8): 1721–1736. Published online 2015 Jun 24. doi: 10.1534/g3.115.018929

PMCID:: PMC4528329

Abstract Article PDF–4.9M

Select item 439805018.

The Genetic Basis for Variation in Olfactory Behavior in Drosophila melanogaster

Gunjan H. Arya, Michael M. Magwire, Wen Huang, Yazmin L. Serrano-Negron, Trudy F.C. Mackay, Robert R.H. Anholt

Chem Senses. 2015 May; 40(4): 233–243. Published online 2015 Feb 15. doi: 10.1093/chemse/bjv001

PMCID:: PMC4398050

Abstract Article PDF–8.9M

Select item 435288719.

The Release 6 reference sequence of the Drosophila melanogaster genome

Roger A. Hoskins, Joseph W. Carlson, Kenneth H. Wan, Soo Park, Ivonne Mendez, Samuel E. Galle, Benjamin W. Booth, Barret D. Pfeiffer, Reed A. George, Robert Svirskas, Martin Krzywinski, Jacqueline Schein, Maria Carmela Accardo, Elisabetta Damia, Giovanni Messina, María Méndez-Lago, Beatriz de Pablos, Olga V. Demakova, Evgeniya N. Andreyeva, Lidiya V. Boldyreva, Marco Marra, A. Bernardo Carvalho, Patrizio Dimitri, Alfredo Villasante, Igor F. Zhimulev, Gerald M. Rubin, Gary H. Karpen, Susan E. Celniker

Genome Res. 2015 Mar; 25(3): 445–458. doi: 10.1101/gr.185579.114

PMCID:: PMC4352887

Abstract Article PDF–1022K

Select item 416099120.

Dopamine Dynamics and Signaling in Drosophila: An Overview of Genes, Drugs and Behavioral Paradigms

Shinya Yamamoto, Elaine S. Seto

Exp Anim. 2014; 63(2): 107–119. Published online 2014 Apr 26. doi: 10.1538/expanim.63.107

PMCID:: PMC4160991

Abstract Article PDF–1.6M

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