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Items: 1 to 20 of 21

1.
The binary protein-protein interaction landscape of Escherichia coli
Seesandra V. Rajagopala, Patricia Sikorski, Ashwani Kumar, Roberto Mosca, James Vlasblom, Roland Arnold, Jonathan Franca-Koh, Suman B. Pakala, Sadhna Phanse, Arnaud Ceol, Roman Häuser, Gabriella Siszler, Stefan Wuchty, Andrew Emili, Mohan Babu, Patrick Aloy, Rembert Pieper, Peter Uetz
Nat Biotechnol. Author manuscript; available in PMC 2014 Sep 1.
Published in final edited form as: Nat Biotechnol. 2014 Mar; 32(3): 285–290. Published online 2014 Feb 23. doi: 10.1038/nbt.2831
PMCID:
PMC4123855
ArticlePDF–1.1M
2.
Prediction of lipoprotein signal peptides in Gram-negative bacteria
Agnieszka S. Juncker, Hanni Willenbrock, Gunnar von Heijne, Søren Brunak, Henrik Nielsen, Anders Krogh
Protein Sci. 2003 Aug; 12(8): 1652–1662. doi: 10.1110/ps.0303703
PMCID:
PMC2323952
ArticlePDF–330K
3.
Products of the Escherichia coli Acid Fitness Island Attenuate Metabolite Stress at Extremely Low pH and Mediate a Cell Density-Dependent Acid Resistance
Aaron K. Mates, Atef K. Sayed, John W. Foster
J Bacteriol. 2007 Apr; 189(7): 2759–2768. Published online 2007 Jan 26. doi: 10.1128/JB.01490-06
PMCID:
PMC1855797
ArticlePDF–519K
4.
Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110
Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi
Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049
PMCID:
PMC1681481
ArticlePDF–141K
5.
Escherichia coli K-12: a cooperatively developed annotation snapshot—2005
Monica Riley, Takashi Abe, Martha B. Arnaud, Mary K.B. Berlyn, Frederick R. Blattner, Roy R. Chaudhuri, Jeremy D. Glasner, Takashi Horiuchi, Ingrid M. Keseler, Takehide Kosuge, Hirotada Mori, Nicole T. Perna, Guy Plunkett, III, Kenneth E. Rudd, Margrethe H. Serres, Gavin H. Thomas, Nicholas R. Thomson, David Wishart, Barry L. Wanner
Nucleic Acids Res. 2006; 34(1): 1–9. Published online 2006 Jan 5. doi: 10.1093/nar/gkj405
PMCID:
PMC1325200
ArticlePDF–204K
6.
Characterization of EvgAS-YdeO-GadE Branched Regulatory Circuit Governing Glutamate-Dependent Acid Resistance in Escherichia coli
Zhuo Ma, Nobuhisa Masuda, John W. Foster
J Bacteriol. 2004 Nov; 186(21): 7378–7389. doi: 10.1128/JB.186.21.7378-7389.2004
PMCID:
PMC523220
ArticlePDF–438K
7.
Classification and Strength Measurement of Stationary-Phase Promoters by Use of a Newly Developed Promoter Cloning Vector
Tomohiro Shimada, Hideki Makinoshima, Yoshito Ogawa, Takeyoshi Miki, Michihisa Maeda, Akira Ishihama
J Bacteriol. 2004 Nov; 186(21): 7112–7122. doi: 10.1128/JB.186.21.7112-7122.2004
PMCID:
PMC523215
ArticlePDF–628K
8.
Genome-Wide Analysis of Lipoprotein Expression in Escherichia coli MG1655
Stephen J. Brokx, Michael Ellison, Troy Locke, Drell Bottorff, Laura Frost, Joel H. Weiner
J Bacteriol. 2004 May; 186(10): 3254–3258. doi: 10.1128/JB.186.10.3254-3258.2004
PMCID:
PMC400601
ArticlePDF–73K
9.
Role of Histone-Like Protein H-NS in Multidrug Resistance of Escherichia coli
Kunihiko Nishino, Akihito Yamaguchi
J Bacteriol. 2004 Mar; 186(5): 1423–1429. doi: 10.1128/JB.186.5.1423-1429.2004
PMCID:
PMC344412
ArticlePDF–143K
10.
Inhibiting Cell Division in Escherichia coli Has Little If Any Effect on Gene Expression
S. J. Ryan Arends, David S. Weiss
J Bacteriol. 2004 Feb; 186(3): 880–884. doi: 10.1128/JB.186.3.880-884.2004
PMCID:
PMC321490
ArticlePDF–230K
11.
Analysis of the Escherichia coli genome. V. DNA sequence of the region from 76.0 to 81.5 minutes.
H J Sofia, V Burland, D L Daniels, G Plunkett, 3rd, F R Blattner
Nucleic Acids Res. 1994 Jul 11; 22(13): 2576–2586. doi: 10.1093/nar/22.13.2576
PMCID:
PMC308212
ArticlePDF–2.3M
12.
Identification of new genes regulated by the marRAB operon in Escherichia coli.
A S Seoane, S B Levy
J Bacteriol. 1995 Feb; 177(3): 530–535. doi: 10.1128/jb.177.3.530-535.1995
PMCID:
PMC176624
SummaryPDF–228K
13.
Genes of the GadX-GadW Regulon in Escherichia coli
Don L. Tucker, Nancy Tucker, Zhuo Ma, John W. Foster, Regina L. Miranda, Paul S. Cohen, Tyrrell Conway
J Bacteriol. 2003 May; 185(10): 3190–3201. doi: 10.1128/JB.185.10.3190-3201.2003
PMCID:
PMC154079
ArticlePDF–2.7M
14.
Global Analysis of Genes Regulated by EvgA of the Two-Component Regulatory System in Escherichia coli
Kunihiko Nishino, Yoshihiko Inazumi, Akihito Yamaguchi
J Bacteriol. 2003 Apr; 185(8): 2667–2672. doi: 10.1128/JB.185.8.2667-2672.2003
PMCID:
PMC152604
ArticlePDF–91K
15.
Escherichia coli Gene Expression Responsive to Levels of the Response Regulator EvgA
Nobuhisa Masuda, George M. Church
J Bacteriol. 2002 Nov; 184(22): 6225–6234. doi: 10.1128/JB.184.22.6225-6234.2002
PMCID:
PMC151933
ArticlePDF–883K
16.
Gene Expression Profiling of the pH Response in Escherichia coli
Don L. Tucker, Nancy Tucker, Tyrrell Conway
J Bacteriol. 2002 Dec; 184(23): 6551–6558. doi: 10.1128/JB.184.23.6551-6558.2002
PMCID:
PMC135413
ArticlePDF–447K
17.
Differential Regulation of Multiple Proteins of Escherichia coli and Salmonella enterica Serovar Typhimurium by the Transcriptional Regulator SlyA
Andrea Spory, Armin Bosserhoff, Christine von Rhein, Werner Goebel, Albrecht Ludwig
J Bacteriol. 2002 Jul; 184(13): 3549–3559. doi: 10.1128/JB.184.13.3549-3559.2002
PMCID:
PMC135123
ArticlePDF–1.2M
18.
Adaptation to famine: A family of stationary-phase genes revealed by microarray analysis
Travis H. Tani, Arkady Khodursky, Robert M. Blumenthal, Patrick O. Brown, Rowena G. Matthews
Proc Natl Acad Sci U S A. 2002 Oct 15; 99(21): 13471–13476. Published online 2002 Oct 8. doi: 10.1073/pnas.212510999
PMCID:
PMC129697
ArticlePDF–275K
19.
Combined, Functional Genomic-Biochemical Approach to Intermediary Metabolism: Interaction of Acivicin, a Glutamine Amidotransferase Inhibitor, with Escherichia coli K-12
Dana R. Smulski, Lixuan L. Huang, Michael P. McCluskey, Mary Jane Gladnick Reeve, Amy C. Vollmer, Tina K. Van Dyk, Robert A. LaRossa
J Bacteriol. 2001 Jun; 183(11): 3353–3364. doi: 10.1128/JB.183.11.3353-3364.2001
PMCID:
PMC99633
ArticlePDF–450K
20.
Adhesion of Type 1-Fimbriated Escherichia coli to Abiotic Surfaces Leads to Altered Composition of Outer Membrane Proteins
Karen Otto, Joakim Norbeck, Thomas Larsson, Karl-Anders Karlsson, Malte Hermansson
J Bacteriol. 2001 Apr; 183(8): 2445–2453. doi: 10.1128/JB.183.8.2445-2453.2001
PMCID:
PMC95160
ArticlePDF–2.7M

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