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Items: 1 to 20 of 41

1.
Lpt, trr, and Hcf regulate histone mono- and dimethylation that are essential for Drosophila heart development
Wen Huang, Jun-yi Zhu, Yulong Fu, Joyce van de Leemput, Zhe Han
Dev Biol. Author manuscript; available in PMC 2023 Dec 19.
Published in final edited form as: Dev Biol. 2022 Oct; 490: 53–65. Published online 2022 Jul 16. doi: 10.1016/j.ydbio.2022.07.003
PMCID:
PMC10728806
AbstractArticlePDF–2.7M
2.
New twists of a TAIL: novel insights into the histone binding properties of a highly conserved PHD finger cluster within the MLR family of H3K4 mono-methyltransferases
Claudia B Zraly, Richard Schultz, Manuel O Diaz, Andrew K Dingwall
Nucleic Acids Res. 2023 Oct 13; 51(18): 9672–9689. Published online 2023 Aug 28. doi: 10.1093/nar/gkad698
PMCID:
PMC10570056
AbstractArticlePDF–2.2M
3.
Wg/Wnt1 and Erasp link ER stress to proapoptotic signaling in an autosomal dominant retinitis pigmentosa model
Jung-Eun Park, Jiyoun Lee, Soonhyuck Ok, Seunghee Byun, Eun-Ju Chang, Sung-Eun Yoon, Young-Joon Kim, Min-Ji Kang
Exp Mol Med. 2023 Jul; 55(7): 1544–1555. Published online 2023 Jul 18. doi: 10.1038/s12276-023-01044-7
PMCID:
PMC10394004
AbstractArticlePDF–3.8M
4.
Drosophila functional screening of de novo variants in autism uncovers damaging variants and facilitates discovery of rare neurodevelopmental diseases
Paul C. Marcogliese, Samantha L. Deal, Jonathan Andrews, J. Michael Harnish, V. Hemanjani Bhavana, Hillary K. Graves, Sharayu Jangam, Xi Luo, Ning Liu, Danqing Bei, Yu-Hsin Chao, Brooke Hull, Pei-Tseng Lee, Hongling Pan, Pradnya Bhadane, Mei-Chu Huang, Colleen M. Longley, Hsiao-Tuan Chao, Hyung-lok Chung, Nele A. Haelterman, Oguz Kanca, Sathiya N. Manivannan, Linda Z. Rossetti, Ryan J. German, Amanda Gerard, Eva Maria Christina Schwaibold, Sarah Fehr, Renzo Guerrini, Annalisa Vetro, Eleina England, Chaya N. Murali, Tahsin Stefan Barakat, Marieke F. van Dooren, Martina Wilke, Marjon van Slegtenhorst, Gaetan Lesca, Isabelle Sabatier, Nicolas Chatron, Catherine A. Brownstein, Jill A. Madden, Pankaj B. Agrawal, Boris Keren, Thomas Courtin, Laurence Perrin, Melanie Brugger, Timo Roser, Steffen Leiz, Frederic Tran Mau-Them, Julian Delanne, Elena Sukarova-Angelovska, Slavica Trajkova, Erik Rosenhahn, Vincent Strehlow, Konrad Platzer, Roberto Keller, Lisa Pavinato, Alfredo Brusco, Jill A. Rosenfeld, Ronit Marom, Michael F. Wangler, Shinya Yamamoto
Cell Rep. Author manuscript; available in PMC 2022 Apr 6.
Published in final edited form as: Cell Rep. 2022 Mar 15; 38(11): 110517. doi: 10.1016/j.celrep.2022.110517
PMCID:
PMC8983390
AbstractArticlePDF–2.9M
5.
Transcriptional cofactors display specificity for distinct types of core promoters
Vanja Haberle, Cosmas D. Arnold, Michaela Pagani, Martina Rath, Katharina Schernhuber, Alexander Stark
Nature. Author manuscript; available in PMC 2022 Jul 12.
Published in final edited form as: Nature. 2019 Jun 1; 570(7759): 122–126. Published online 2019 May 15. doi: 10.1038/s41586-019-1210-7
PMCID:
PMC7613045
AbstractArticlePDF–6.4M
6.
The Drosophila MLR COMPASS complex is essential for programming cis-regulatory information and maintaining epigenetic memory during development
Claudia B Zraly, Abdul Zakkar, John Hertenstein Perez, Jeffrey Ng, Kevin P White, Matthew Slattery, Andrew K Dingwall
Nucleic Acids Res. 2020 Apr 17; 48(7): 3476–3495. Published online 2020 Feb 13. doi: 10.1093/nar/gkaa082
PMCID:
PMC7144903
AbstractArticlePDF–12M
7.
Stem Cell Proliferation Is Kept in Check by the Chromatin Regulators Kismet/CHD7/CHD8 and Trr/MLL3/4
Louis Gervais, Marius van den Beek, Manon Josserand, Jérémy Sallé, Marine Stefanutti, Carolina N. Perdigoto, Patricia Skorski, Khallil Mazouni, Owen J. Marshall, Andrea H. Brand, François Schweisguth, Allison J. Bardin
Dev Cell. 2019 May 20; 49(4): 556–573.e6. doi: 10.1016/j.devcel.2019.04.033
PMCID:
PMC6547167
AbstractArticlePDF–10M
8.
A Comprehensive Drosophila melanogaster Transcription Factor Interactome
Leila Shokri, Sachi Inukai, Antonina Hafner, Kathryn Weinand, Korneel Hens, Anastasia Vedenko, Stephen S. Gisselbrecht, Riccardo Dainese, Johannes Bischof, Edy Furger, Jean-Daniel Feuz, Konrad Basler, Bart Deplancke, Martha L. Bulyk
Cell Rep. Author manuscript; available in PMC 2019 Apr 26.
Published in final edited form as: Cell Rep. 2019 Apr 16; 27(3): 955–970.e7. doi: 10.1016/j.celrep.2019.03.071
PMCID:
PMC6485956
AbstractArticlePDF–1.6M
9.
A gene-specific T2A-GAL4 library for Drosophila
Pei-Tseng Lee, Jonathan Zirin, Oguz Kanca, Wen-Wen Lin, Karen L Schulze, David Li-Kroeger, Rong Tao, Colby Devereaux, Yanhui Hu, Verena Chung, Ying Fang, Yuchun He, Hongling Pan, Ming Ge, Zhongyuan Zuo, Benjamin E Housden, Stephanie E Mohr, Shinya Yamamoto, Robert W Levis, Allan C Spradling, Norbert Perrimon, Hugo J Bellen
eLife. 2018; 7: e35574. Published online 2018 Mar 22. doi: 10.7554/eLife.35574
PMCID:
PMC5898912
AbstractArticlePDF–4.9M
10.
Regulation of Adult CNS Axonal Regeneration by the Post-transcriptional Regulator Cpeb1
Wilson Pak-Kin Lou, Alvaro Mateos, Marta Koch, Stefan Klussman, Chao Yang, Na Lu, Sachin Kumar, Stefanie Limpert, Manuel Göpferich, Marlen Zschaetzsch, Christopher Sliwinski, Marc Kenzelmann, Matthias Seedorf, Carlos Maillo, Elena Senis, Dirk Grimm, Radhika Puttagunta, Raul Mendez, Kai Liu, Bassem A. Hassan, Ana Martin-Villalba
Front Mol Neurosci. 2017; 10: 445. Published online 2018 Jan 12. doi: 10.3389/fnmol.2017.00445
PMCID:
PMC5770975
AbstractArticlePDF–8.3M
11.
Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species
Piero Sanfilippo, Jiayu Wen, Eric C. Lai
Genome Biol. 2017; 18: 229. Published online 2017 Nov 30. doi: 10.1186/s13059-017-1358-0
PMCID:
PMC5707805
AbstractArticlePDF–3.2M
12.
Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster
Xiaochuan Liu, Jaime Freitas, Dinghai Zheng, Marta S. Oliveira, Mainul Hoque, Torcato Martins, Telmo Henriques, Bin Tian, Alexandra Moreira
RNA. 2017 Dec; 23(12): 1807–1816. doi: 10.1261/rna.062661.117
PMCID:
PMC5689002
AbstractArticlePDF–4.0M
13.
Histone H3K4 monomethylation catalyzed by Trr and mammalian COMPASS-like proteins at enhancers is dispensable for development and viability
Ryan Rickels, Hans-Martin Herz, Christie C Sze, Kaixiang Cao, Marc A Morgan, Clayton K Collings, Maria Gause, Yoh-hei Takahashi, Lu Wang, Emily J Rendleman, Stacy A Marshall, Annika Krueger, Elizabeth T Bartom, Andrea Piunti, Edwin Smith, Nebiyu A Abshiru, Neil L Kelleher, Dale Dorsett, Ali Shilatifard
Nat Genet. Author manuscript; available in PMC 2017 Nov 1.
Published in final edited form as: Nat Genet. 2017 Nov; 49(11): 1647–1653. Published online 2017 Oct 2. doi: 10.1038/ng.3965
PMCID:
PMC5663216
AbstractArticlePDF–1.1M
14.
Proteome-wide dataset supporting the study of ancient metazoan macromolecular complexes
Sadhna Phanse, Cuihong Wan, Blake Borgeson, Fan Tu, Kevin Drew, Greg Clark, Xuejian Xiong, Olga Kagan, Julian Kwan, Alexandr Bezginov, Kyle Chessman, Swati Pal, Graham Cromar, Ophelia Papoulas, Zuyao Ni, Daniel R. Boutz, Snejana Stoilova, Pierre C. Havugimana, Xinghua Guo, Ramy H. Malty, Mihail Sarov, Jack Greenblatt, Mohan Babu, W. Brent Derry, Elisabeth R. Tillier, John B. Wallingford, John Parkinson, Edward M. Marcotte, Andrew Emili
Data Brief. 2016 Mar; 6: 715–721. Published online 2015 Dec 12. doi: 10.1016/j.dib.2015.11.062
PMCID:
PMC4738005
AbstractArticlePDF–205K
15.
Gene Model Annotations for Drosophila melanogaster: The Rule-Benders
Madeline A. Crosby, L. Sian Gramates, Gilberto dos Santos, Beverley B. Matthews, Susan E. St. Pierre, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, David B. Emmert, Susan M. Russo, William M. Gelbart, the FlyBase Consortium
G3 (Bethesda) 2015 Aug; 5(8): 1737–1749. Published online 2015 Jun 24. doi: 10.1534/g3.115.018937
PMCID:
PMC4528330
AbstractArticlePDF–2.2M
16.
Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data
Beverley B. Matthews, Gilberto dos Santos, Madeline A. Crosby, David B. Emmert, Susan E. St. Pierre, L. Sian Gramates, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, Victor Strelets, Susan M. Russo, William M. Gelbart, the FlyBase Consortium
G3 (Bethesda) 2015 Aug; 5(8): 1721–1736. Published online 2015 Jun 24. doi: 10.1534/g3.115.018929
PMCID:
PMC4528329
AbstractArticlePDF–4.9M
17.
The transcription factor Cabut coordinates energy metabolism and the circadian clock in response to sugar sensing
Osnat Bartok, Mari Teesalu, Reut Ashwall-Fluss, Varun Pandey, Mor Hanan, Bohdana M Rovenko, Minna Poukkula, Essi Havula, Arieh Moussaieff, Sadanand Vodala, Yaakov Nahmias, Sebastian Kadener, Ville Hietakangas
EMBO J. 2015 Jun 3; 34(11): 1538–1553. Published online 2015 Apr 27. doi: 10.15252/embj.201591385
PMCID:
PMC4474529
AbstractArticlePDF–1.7M
18.
The Release 6 reference sequence of the Drosophila melanogaster genome
Roger A. Hoskins, Joseph W. Carlson, Kenneth H. Wan, Soo Park, Ivonne Mendez, Samuel E. Galle, Benjamin W. Booth, Barret D. Pfeiffer, Reed A. George, Robert Svirskas, Martin Krzywinski, Jacqueline Schein, Maria Carmela Accardo, Elisabetta Damia, Giovanni Messina, María Méndez-Lago, Beatriz de Pablos, Olga V. Demakova, Evgeniya N. Andreyeva, Lidiya V. Boldyreva, Marco Marra, A. Bernardo Carvalho, Patrizio Dimitri, Alfredo Villasante, Igor F. Zhimulev, Gerald M. Rubin, Gary H. Karpen, Susan E. Celniker
Genome Res. 2015 Mar; 25(3): 445–458. doi: 10.1101/gr.185579.114
PMCID:
PMC4352887
AbstractArticlePDF–1022K
19.
Comparative analysis of regulatory information and circuits across distant species
Alan P. Boyle, Carlos L. Araya, Cathleen Brdlik, Philip Cayting, Chao Cheng, Yong Cheng, Kathryn Gardner, LaDeana Hillier, Judith Janette, Lixia Jiang, Dionna Kasper, Trupti Kawli, Pouya Kheradpour, Anshul Kundaje, Jingyi Jessica Li, Lijia Ma, Wei Niu, E. Jay Rehm, Joel Rozowsky, Matthew Slattery, Rebecca Spokony, Robert Terrell, Dionne Vafeados, Daifeng Wang, Peter Weisdepp, Yi-Chieh Wu, Dan Xie, Koon-Kiu Yan, Elise A. Feingold, Peter J. Good, Michael J. Pazin, Haiyan Huang, Peter J. Bickel, Steven E. Brenner, Valerie Reinke, Robert H. Waterston, Mark Gerstein, Kevin P. White, Manolis Kellis, Michael Snyder
Nature. Author manuscript; available in PMC 2015 Feb 28.
Published in final edited form as: Nature. 2014 Aug 28; 512(7515): 453–456. doi: 10.1038/nature13668
PMCID:
PMC4336544
AbstractArticlePDF–2.9M
20.
Diverse patterns of genomic targeting by transcriptional regulators in Drosophila melanogaster
Matthew Slattery, Lijia Ma, Rebecca F. Spokony, Robert K. Arthur, Pouya Kheradpour, Anshul Kundaje, Nicolas Nègre, Alex Crofts, Ryan Ptashkin, Jennifer Zieba, Alexander Ostapenko, Sarah Suchy, Alec Victorsen, Nader Jameel, A. Jason Grundstad, Wenxuan Gao, Jennifer R. Moran, E. Jay Rehm, Robert L. Grossman, Manolis Kellis, Kevin P. White
Genome Res. 2014 Jul; 24(7): 1224–1235. doi: 10.1101/gr.168807.113
PMCID:
PMC4079976
AbstractArticlePDF–2.4M

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