PMC Links for GEO Profiles (Select 13590314) - PMC

Andreea-Adriana Neamtu, Rita Szoke-Kovacs, Emoke Mihok, Cecilia Georgescu, Violeta Turcus, Neli Kinga Olah, Adina Frum, Ovidiu Tita, Carmen Neamtu, Zsombor Szoke-Kovacs, Zoltan Cziaky, Endre Mathe

Antioxidants (Basel) 2020 Nov; 9(11): 1067. Published online 2020 Oct 30. doi: 10.3390/antiox9111067

PMCID:: PMC7694118

Abstract Article PDF–2.2M

Select item 73219244.

Single-cell RNA sequencing identifies novel cell types in Drosophila blood

Yulong Fu, Xiaohu Huang, Peng Zhang, Joyce van de Leemput, Zhe Han

J Genet Genomics. Author manuscript; available in PMC 2021 Apr 20.

Published in final edited form as: J Genet Genomics. 2020 Apr 20; 47(4): 175–186. Published online 2020 Mar 9. doi: 10.1016/j.jgg.2020.02.004

PMCID:: PMC7321924

Abstract Article PDF–2.6M

Select item 70569695.

The Drosophila Post-mating Response: Gene Expression and Behavioral Changes Reveal Perdurance and Variation in Cross-Tissue Interactions

Nicole R. Newell, Surjyendu Ray, Justin E. Dalton, Julia C. Fortier, Joyce Y. Kao, Peter L. Chang, Sergey V. Nuzhdin, Michelle N. Arbeitman

G3 (Bethesda) 2020 Mar; 10(3): 967–983. Published online 2020 Jan 6. doi: 10.1534/g3.119.400963

PMCID:: PMC7056969

Abstract Article PDF–2.3M

Select item 69615786.

CRISPR-based modular assembly of a UAS-cDNA/ORF plasmid library for more than 5500 Drosophila genes conserved in humans

Ping Wei, Wen Xue, Yun Zhao, Guang Ning, Jiwu Wang

Genome Res. 2020 Jan; 30(1): 95–106. doi: 10.1101/gr.250811.119

PMCID:: PMC6961578

Abstract Article PDF–3.6M

Select item 57078057.

Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species

Piero Sanfilippo, Jiayu Wen, Eric C. Lai

Genome Biol. 2017; 18: 229. Published online 2017 Nov 30. doi: 10.1186/s13059-017-1358-0

PMCID:: PMC5707805

Abstract Article PDF–3.2M

Select item 56890028.

Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster

Xiaochuan Liu, Jaime Freitas, Dinghai Zheng, Marta S. Oliveira, Mainul Hoque, Torcato Martins, Telmo Henriques, Bin Tian, Alexandra Moreira

RNA. 2017 Dec; 23(12): 1807–1816. doi: 10.1261/rna.062661.117

PMCID:: PMC5689002

Abstract Article PDF–4.0M

Select item 56771739.

The Effect of Common Inversion Polymorphisms In(2L)t and In(3R)Mo on Patterns of Transcriptional Variation in Drosophila melanogaster

Erik Lavington, Andrew D. Kern

G3 (Bethesda) 2017 Nov; 7(11): 3659–3668. Published online 2017 Sep 14. doi: 10.1534/g3.117.1133

PMCID:: PMC5677173

Abstract Article PDF–1.2M

Select item 517763510.

TRAP-seq Profiling and RNAi-Based Genetic Screens Identify Conserved Glial Genes Required for Adult Drosophila Behavior

Fanny S. Ng, Sukanya Sengupta, Yanmei Huang, Amy M. Yu, Samantha You, Mary A. Roberts, Lakshmanan K. Iyer, Yongjie Yang, F. Rob Jackson

Front Mol Neurosci. 2016; 9: 146. Published online 2016 Dec 22. doi: 10.3389/fnmol.2016.00146

PMCID:: PMC5177635

Abstract Article PDF–2.5M

Select item 512686411.

Latitudinal clines in gene expression and cis-regulatory element variation in Drosophila melanogaster

Punita Juneja, Andrew Quinn, Francis M. Jiggins

BMC Genomics. 2016; 17: 981. Published online 2016 Nov 28. doi: 10.1186/s12864-016-3333-7

PMCID:: PMC5126864

Abstract Article PDF–1.1M

Select item 503760912.

Genome-wide identification of Drosophila dorso-ventral enhancers by differential histone acetylation analysis

Nina Koenecke, Jeff Johnston, Bjoern Gaertner, Malini Natarajan, Julia Zeitlinger

Genome Biol. 2016; 17: 196. Published online 2016 Sep 27. doi: 10.1186/s13059-016-1057-2

PMCID:: PMC5037609

Abstract Article PDF–2.2M

Select item 493747413.

Long-Term Memory in Drosophila Is Influenced by Histone Deacetylase HDAC4 Interacting with SUMO-Conjugating Enzyme Ubc9

Silvia Schwartz, Mauro Truglio, Maxwell J. Scott, Helen L. Fitzsimons

Genetics. 2016 Jul; 203(3): 1249–1264. Published online 2016 May 3. doi: 10.1534/genetics.115.183194

PMCID:: PMC4937474

Abstract Article PDF–2.3M

Select item 492804714.

Cold acclimation wholly reorganizes the Drosophila melanogaster transcriptome and metabolome

Heath A. MacMillan, Jose M. Knee, Alice B. Dennis, Hiroko Udaka, Katie E. Marshall, Thomas J. S. Merritt, Brent J. Sinclair

Sci Rep. 2016; 6: 28999. Published online 2016 Jun 30. doi: 10.1038/srep28999

PMCID:: PMC4928047

Abstract Article PDF–3.1M

Select item 452833015.

Gene Model Annotations for Drosophila melanogaster: The Rule-Benders

Madeline A. Crosby, L. Sian Gramates, Gilberto dos Santos, Beverley B. Matthews, Susan E. St. Pierre, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, David B. Emmert, Susan M. Russo, William M. Gelbart, the FlyBase Consortium

G3 (Bethesda) 2015 Aug; 5(8): 1737–1749. Published online 2015 Jun 24. doi: 10.1534/g3.115.018937

PMCID:: PMC4528330

Abstract Article PDF–2.2M

Select item 452832916.

Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data

Beverley B. Matthews, Gilberto dos Santos, Madeline A. Crosby, David B. Emmert, Susan E. St. Pierre, L. Sian Gramates, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, Victor Strelets, Susan M. Russo, William M. Gelbart, the FlyBase Consortium

G3 (Bethesda) 2015 Aug; 5(8): 1721–1736. Published online 2015 Jun 24. doi: 10.1534/g3.115.018929

PMCID:: PMC4528329

Abstract Article PDF–4.9M

Select item 435288717.

The Release 6 reference sequence of the Drosophila melanogaster genome

Roger A. Hoskins, Joseph W. Carlson, Kenneth H. Wan, Soo Park, Ivonne Mendez, Samuel E. Galle, Benjamin W. Booth, Barret D. Pfeiffer, Reed A. George, Robert Svirskas, Martin Krzywinski, Jacqueline Schein, Maria Carmela Accardo, Elisabetta Damia, Giovanni Messina, María Méndez-Lago, Beatriz de Pablos, Olga V. Demakova, Evgeniya N. Andreyeva, Lidiya V. Boldyreva, Marco Marra, A. Bernardo Carvalho, Patrizio Dimitri, Alfredo Villasante, Igor F. Zhimulev, Gerald M. Rubin, Gary H. Karpen, Susan E. Celniker

Genome Res. 2015 Mar; 25(3): 445–458. doi: 10.1101/gr.185579.114

PMCID:: PMC4352887

Abstract Article PDF–1022K

Select item 427243418.

The acetate switch of an intestinal pathogen disrupts host insulin signaling and lipid metabolism

Saiyu Hang, Alexandra E. Purdy, William P Robins, Zhipeng Wang, Manabendra Mandal, Sarah Chang, John J Mekalanos, Paula I Watnick

Cell Host Microbe. Author manuscript; available in PMC 2015 Nov 12.

Published in final edited form as: Cell Host Microbe. 2014 Nov 12; 16(5): 592–604. Published online 2014 Nov 12. doi: 10.1016/j.chom.2014.10.006

PMCID:: PMC4272434

Abstract Article PDF–2.1M

Select item 359869119.

Functional characterization and gene expression profiling of Drosophila melanogaster short dADA2b isoform-containing dSAGA complexes

Tibor Pankotai, Nóra Zsindely, Edith E Vamos, Orbán Komonyi, László Bodai, Imre M Boros

BMC Genomics. 2013; 14: 44. Published online 2013 Jan 22. doi: 10.1186/1471-2164-14-44

PMCID:: PMC3598691

Abstract Article PDF–1.3M

Select item 353067720.

High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression

Philippe Batut, Alexander Dobin, Charles Plessy, Piero Carninci, Thomas R. Gingeras

Genome Res. 2013 Jan; 23(1): 169–180. doi: 10.1101/gr.139618.112

PMCID:: PMC3530677

Abstract Article PDF–1.5M

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