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Items: 1 to 20 of 25

1.
Assessment of community efforts to advance network-based prediction of protein–protein interactions
Xu-Wen Wang, Lorenzo Madeddu, Kerstin Spirohn, Leonardo Martini, Adriano Fazzone, Luca Becchetti, Thomas P. Wytock, István A. Kovács, Olivér M. Balogh, Bettina Benczik, Mátyás Pétervári, Bence Ágg, Péter Ferdinandy, Loan Vulliard, Jörg Menche, Stefania Colonnese, Manuela Petti, Gaetano Scarano, Francesca Cuomo, Tong Hao, Florent Laval, Luc Willems, Jean-Claude Twizere, Marc Vidal, Michael A. Calderwood, Enrico Petrillo, Albert-László Barabási, Edwin K. Silverman, Joseph Loscalzo, Paola Velardi, Yang-Yu Liu
Nat Commun. 2023; 14: 1582. Published online 2023 Mar 22. doi: 10.1038/s41467-023-37079-7
PMCID:
PMC10033937
AbstractArticlePDF–1.5M
2.
A sperm ion channel required for sperm motility and male fertility
Dejian Ren, Betsy Navarro, Gloria Perez, Alexander C. Jackson, Shyuefang Hsu, Qing Shi, Jonathan L. Tilly, David E. Clapham
Nature. Author manuscript; available in PMC 2021 Sep 24.
Published in final edited form as: Nature. 2001 Oct 11; 413(6856): 603–609. doi: 10.1038/35098027
PMCID:
PMC8462998
AbstractArticlePDF–2.6M
3.
CRISP2, CATSPER1 and PATE1 Expression in Human Asthenozoospermic Semen
Francesco Manfrevola, Bruno Ferraro, Carolina Sellitto, Domenico Rocco, Silvia Fasano, Riccardo Pierantoni, Rosanna Chianese
Cells. 2021 Aug; 10(8): 1956. Published online 2021 Jul 31. doi: 10.3390/cells10081956
PMCID:
PMC8391270
AbstractArticlePDF–1.4M
4.
Roles of CatSper channels in the pathogenesis of asthenozoospermia and the therapeutic effects of acupuncture-like treatment on asthenozoospermia
Zi-Run Jin, Dong Fang, Bo-Heng Liu, Jie Cai, Wen-Hao Tang, Hui Jiang, Guo-Gang Xing
Theranostics. 2021; 11(6): 2822–2844. Published online 2021 Jan 1. doi: 10.7150/thno.51869
PMCID:
PMC7806476
AbstractArticlePDF–5.6M
5.
A reference map of the human binary protein interactome
Katja Luck, Dae-Kyum Kim, Luke Lambourne, Kerstin Spirohn, Bridget E. Begg, Wenting Bian, Ruth Brignall, Tiziana Cafarelli, Francisco J. Campos-Laborie, Benoit Charloteaux, Dongsic Choi, Atina G. Coté, Meaghan Daley, Steven Deimling, Alice Desbuleux, Amélie Dricot, Marinella Gebbia, Madeleine F. Hardy, Nishka Kishore, Jennifer J. Knapp, István A. Kovács, Irma Lemmens, Miles W. Mee, Joseph C. Mellor, Carl Pollis, Carles Pons, Aaron D. Richardson, Sadie Schlabach, Bridget Teeking, Anupama Yadav, Mariana Babor, Dawit Balcha, Omer Basha, Christian Bowman-Colin, Suet-Feung Chin, Soon Gang Choi, Claudia Colabella, Georges Coppin, Cassandra D’Amata, David De Ridder, Steffi De Rouck, Miquel Duran-Frigola, Hanane Ennajdaoui, Florian Goebels, Liana Goehring, Anjali Gopal, Ghazal Haddad, Elodie Hatchi, Mohamed Helmy, Yves Jacob, Yoseph Kassa, Serena Landini, Roujia Li, Natascha van Lieshout, Andrew MacWilliams, Dylan Markey, Joseph N. Paulson, Sudharshan Rangarajan, John Rasla, Ashyad Rayhan, Thomas Rolland, Adriana San-Miguel, Yun Shen, Dayag Sheykhkarimli, Gloria M. Sheynkman, Eyal Simonovsky, Murat Taşan, Alexander Tejeda, Vincent Tropepe, Jean-Claude Twizere, Yang Wang, Robert J. Weatheritt, Jochen Weile, Yu Xia, Xinping Yang, Esti Yeger-Lotem, Quan Zhong, Patrick Aloy, Gary D. Bader, Javier De Las Rivas, Suzanne Gaudet, Tong Hao, Janusz Rak, Jan Tavernier, David E. Hill, Marc Vidal, Frederick P. Roth, Michael A. Calderwood
Nature. Author manuscript; available in PMC 2020 Oct 8.
Published in final edited form as: Nature. 2020 Apr; 580(7803): 402–408. Published online 2020 Apr 8. doi: 10.1038/s41586-020-2188-x
PMCID:
PMC7169983
AbstractArticlePDF–5.4M
6.
Extensive disruption of protein interactions by genetic variants across the allele frequency spectrum in human populations
Robert Fragoza, Jishnu Das, Shayne D. Wierbowski, Jin Liang, Tina N. Tran, Siqi Liang, Juan F. Beltran, Christen A. Rivera-Erick, Kaixiong Ye, Ting-Yi Wang, Li Yao, Matthew Mort, Peter D. Stenson, David N. Cooper, Xiaomu Wei, Alon Keinan, John C. Schimenti, Andrew G. Clark, Haiyuan Yu
Nat Commun. 2019; 10: 4141. Published online 2019 Sep 12. doi: 10.1038/s41467-019-11959-3
PMCID:
PMC6742646
AbstractArticlePDF–1.2M
7.
An interactome perturbation framework prioritizes damaging missense mutations for developmental disorders
Siwei Chen, Robert Fragoza, Lambertus Klei, Yuan Liu, Jiebiao Wang, Kathryn Roeder, Bernie Devlin, Haiyuan Yu
Nat Genet. Author manuscript; available in PMC 2019 Jul 1.
Published in final edited form as: Nat Genet. 2018 Jul; 50(7): 1032–1040. Published online 2018 Jun 11. doi: 10.1038/s41588-018-0130-z
PMCID:
PMC6314957
AbstractArticlePDF–1.3M
8.
Regulation of CATSPER1 expression by the testis-determining gene SRY
Aleida Olivares, Adriana Hernández-Reyes, Ricardo Felix, Ángela Forero, Minerva Mata-Rocha, Javier Hernández-Sánchez, Isis Santos, Charmina Aguirre-Alvarado, Norma Oviedo
PLoS One. 2018; 13(10): e0205744. Published online 2018 Oct 31. doi: 10.1371/journal.pone.0205744
PMCID:
PMC6209213
AbstractArticlePDF–2.3M
9.
Regulation of the sperm calcium channel CatSper by endogenous steroids and plant triterpenoids
Nadja Mannowetz, Melissa R. Miller, Polina V. Lishko
Proc Natl Acad Sci U S A. 2017 May 30; 114(22): 5743–5748. Published online 2017 May 15. doi: 10.1073/pnas.1700367114
PMCID:
PMC5465908
AbstractArticlePDF–1.8M
10.
An inter‐species protein–protein interaction network across vast evolutionary distance
Quan Zhong, Samuel J Pevzner, Tong Hao, Yang Wang, Roberto Mosca, Jörg Menche, Mikko Taipale, Murat Taşan, Changyu Fan, Xinping Yang, Patrick Haley, Ryan R Murray, Flora Mer, Fana Gebreab, Stanley Tam, Andrew MacWilliams, Amélie Dricot, Patrick Reichert, Balaji Santhanam, Lila Ghamsari, Michael A Calderwood, Thomas Rolland, Benoit Charloteaux, Susan Lindquist, Albert‐László Barabási, David E Hill, Patrick Aloy, Michael E Cusick, Yu Xia, Frederick P Roth, Marc Vidal
Mol Syst Biol. 2016 Apr; 12(4): 865. Published online 2016 Apr 23. doi: 10.15252/msb.20156484
PMCID:
PMC4848758
AbstractArticlePDF–2.1M
11.
Analysis of the correlation of CATSPER single nucleotide polymorphisms (SNPs) with idiopathic asthenospermia
Fangpeng Shu, Xumin Zhou, Fenxia Li, Daojun Lu, Bin Lei, Qi Li, Yu Yang, Xuexi Yang, Rong Shi, Xiangming Mao
J Assist Reprod Genet. 2015 Nov; 32(11): 1643–1649. Published online 2015 Sep 8. doi: 10.1007/s10815-015-0548-5
PMCID:
PMC4651948
AbstractArticlePDF–650K
12.
Specific loss of CatSper function is sufficient to compromise fertilizing capacity of human spermatozoa
Hannah L. Williams, Steven Mansell, Wardah Alasmari, Sean G. Brown, Stuart M. Wilson, Keith A. Sutton, Melissa R. Miller, Polina V. Lishko, Christopher L.R. Barratt, Steven J. Publicover, Sarah Martins da Silva
Hum Reprod. 2015 Dec; 30(12): 2737–2746. Published online 2015 Oct 8. doi: 10.1093/humrep/dev243
PMCID:
PMC4643530
AbstractArticlePDF–465K
13.
Widespread Macromolecular Interaction Perturbations in Human Genetic Disorders
Nidhi Sahni, Song Yi, Mikko Taipale, Juan I. Fuxman Bass, Jasmin Coulombe-Huntington, Fan Yang, Jian Peng, Jochen Weile, Georgios I. Karras, Yang Wang, István A. Kovács, Atanas Kamburov, Irina Krykbaeva, Mandy H. Lam, George Tucker, Vikram Khurana, Amitabh Sharma, Yang-Yu Liu, Nozomu Yachie, Quan Zhong, Yun Shen, Alexandre Palagi, Adriana San-Miguel, Changyu Fan, Dawit Balcha, Amelie Dricot, Daniel M. Jordan, Jennifer M. Walsh, Akash A. Shah, Xinping Yang, Ani Stoyanova, Alex Leighton, Michael A. Calderwood, Yves Jacob, Michael E. Cusick, Kourosh Salehi-Ashtiani, Luke J. Whitesell, Shamil Sunyaev, Bonnie Berger, Albert-László Barabási, Benoit Charloteaux, David E. Hill, Tong Hao, Frederick P. Roth, Yu Xia, Albertha J.M. Walhout, Susan Lindquist, Marc Vidal
Cell. Author manuscript; available in PMC 2016 Apr 23.
Published in final edited form as: Cell. 2015 Apr 23; 161(3): 647–660. doi: 10.1016/j.cell.2015.04.013
PMCID:
PMC4441215
AbstractArticlePDF–1.2M
14.
A proteome-scale map of the human interactome network
Thomas Rolland, Murat Taşan, Benoit Charloteaux, Samuel J. Pevzner, Quan Zhong, Nidhi Sahni, Song Yi, Irma Lemmens, Celia Fontanillo, Roberto Mosca, Atanas Kamburov, Susan D. Ghiassian, Xinping Yang, Lila Ghamsari, Dawit Balcha, Bridget E. Begg, Pascal Braun, Marc Brehme, Martin P. Broly, Anne-Ruxandra Carvunis, Dan Convery-Zupan, Roser Corominas, Jasmin Coulombe-Huntington, Elizabeth Dann, Matija Dreze, Amélie Dricot, Changyu Fan, Eric Franzosa, Fana Gebreab, Bryan J. Gutierrez, Madeleine F. Hardy, Mike Jin, Shuli Kang, Ruth Kiros, Guan Ning Lin, Katja Luck, Andrew MacWilliams, Jörg Menche, Ryan R. Murray, Alexandre Palagi, Matthew M. Poulin, Xavier Rambout, John Rasla, Patrick Reichert, Viviana Romero, Elien Ruyssinck, Julie M. Sahalie, Annemarie Scholz, Akash A. Shah, Amitabh Sharma, Yun Shen, Kerstin Spirohn, Stanley Tam, Alexander O. Tejeda, Shelly A. Wanamaker, Jean-Claude Twizere, Kerwin Vega, Jennifer Walsh, Michael E. Cusick, Yu Xia, Albert-László Barabási, Lilia M. Iakoucheva, Patrick Aloy, Javier De Las Rivas, Jan Tavernier, Michael A. Calderwood, David E. Hill, Tong Hao, Frederick P. Roth, Marc Vidal
Cell. Author manuscript; available in PMC 2015 Nov 20.
Published in final edited form as: Cell. 2014 Nov 20; 159(5): 1212–1226. doi: 10.1016/j.cell.2014.10.050
PMCID:
PMC4266588
AbstractArticlePDF–3.1M
15.
Disruption of the principal, progesterone-activated sperm Ca2+ channel in a CatSper2-deficient infertile patient
James F. Smith, Olga Syritsyna, Marc Fellous, Catherine Serres, Nadja Mannowetz, Yuriy Kirichok, Polina V. Lishko
Proc Natl Acad Sci U S A. 2013 Apr 23; 110(17): 6823–6828. Published online 2013 Mar 25. doi: 10.1073/pnas.1216588110
PMCID:
PMC3637729
AbstractArticlePDF–1.0M
16.
Ca2+ Signals Generated by CatSper and Ca2+ Stores Regulate Different Behaviors in Human Sperm
Wardah Alasmari, Sarah Costello, Joao Correia, Senga K. Oxenham, Jennifer Morris, Leonor Fernandes, Joao Ramalho-Santos, Jackson Kirkman-Brown, Francesco Michelangeli, Stephen Publicover, Christopher L. R. Barratt
J Biol Chem. 2013 Mar 1; 288(9): 6248–6258. Published online 2013 Jan 23. doi: 10.1074/jbc.M112.439356
PMCID:
PMC3585060
AbstractArticlePDF–1.8M
17.
The CatSper channel: a polymodal chemosensor in human sperm
Christoph Brenker, Normann Goodwin, Ingo Weyand, Nachiket D Kashikar, Masahiro Naruse, Miriam Krähling, Astrid Müller, U Benjamin Kaupp, Timo Strünker
EMBO J. 2012 Apr 4; 31(7): 1654–1665. Published online 2012 Feb 21. doi: 10.1038/emboj.2012.30
PMCID:
PMC3321208
AbstractArticlePDF–769K
18.
Leveraging the power of next-generation sequencing to generate interactome datasets
Haiyuan Yu, Leah Tardivo, Stanley Tam, Evan Weiner, Fana Gebreab, Changyu Fan, Nenad Svrzikapa, Tomoko Hirozane-Kishikawa, Edward Rietman, Xinping Yang, Julie Sahalie, Kourosh Salehi-Ashtiani, Tong Hao, Michael E. Cusick, David E. Hill, Frederick P. Roth, Pascal Braun, Marc Vidal
Nat Methods. Author manuscript; available in PMC 2011 Dec 1.
Published in final edited form as: Nat Methods. 2011 Jun; 8(6): 478–480. Published online 2011 Apr 24. doi: 10.1038/nmeth.1597
PMCID:
PMC3188388
AbstractArticlePDF–932K
19.
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas
Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042
PMCID:
PMC3178059
AbstractArticlePDF–1.0M
20.
Genetic male infertility and mutation of CATSPER ion channels
Michael S Hildebrand, Matthew R Avenarius, Marc Fellous, Yuzhou Zhang, Nicole C Meyer, Jana Auer, Catherine Serres, Kimia Kahrizi, Hossein Najmabadi, Jacques S Beckmann, Richard J H Smith
Eur J Hum Genet. 2010 Nov; 18(11): 1178–1184. Published online 2010 Jul 21. doi: 10.1038/ejhg.2010.108
PMCID:
PMC2987470
AbstractArticlePDF–374K

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