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Links from GEO Profiles

Items: 17

1.
Dual Proteome-scale Networks Reveal Cell-specific Remodeling of the Human Interactome
Edward L. Huttlin, Raphael J. Bruckner, Jose Navarrete-Perea, Joe R. Cannon, Kurt Baltier, Fana Gebreab, Melanie P. Gygi, Alexandra Thornock, Gabriela Zarraga, Stanley Tam, John Szpyt, Brandon M. Gassaway, Alexandra Panov, Hannah Parzen, Sipei Fu, Arvene Golbazi, Eila Maenpaa, Keegan Stricker, Sanjukta Guha Thakurta, Tian Zhang, Ramin Rad, Joshua Pan, David P. Nusinow, Joao A. Paulo, Devin K. Schweppe, Laura Pontano Vaites, J. Wade Harper, Steven P. Gygi
Cell. Author manuscript; available in PMC 2022 May 27.
Published in final edited form as: Cell. 2021 May 27; 184(11): 3022–3040.e28. Published online 2021 May 6. doi: 10.1016/j.cell.2021.04.011
PMCID:
PMC8165030
AbstractArticlePDF–2.2M
2.
Long Noncoding RNA Expression Profiling Reveals Upregulation of Uroplakin 1A and Uroplakin 1A Antisense RNA 1 under Hypoxic Conditions in Lung Cancer Cells
Yuree Byun, Young-Chul Choi, Yongsu Jeong, Jaeseung Yoon, Kwanghee Baek
Mol Cells. 2020 Dec 31; 43(12): 975–988. Published online 2020 Dec 3. doi: 10.14348/molcells.2020.0126
PMCID:
PMC7772508
AbstractArticlePDF–4.6M
3.
ΔNp63α Suppresses TGFB2 Expression and RHOA Activity to Drive Cell Proliferation in Squamous Cell Carcinomas
Christopher G. Abraham, Michael P. Ludwig, Zdenek Andrysik, Ahwan Pandey, Molishree Joshi, Matthew D. Galbraith, Kelly D. Sullivan, Joaquin M. Espinosa
Cell Rep. Author manuscript; available in PMC 2018 Nov 6.
Published in final edited form as: Cell Rep. 2018 Sep 18; 24(12): 3224–3236. doi: 10.1016/j.celrep.2018.08.058
PMCID:
PMC6219633
AbstractArticlePDF–1.1M
4.
High Expression of Human Uroplakin Ia in Urinary Bladder Transitional Cell Carcinoma
Susumu Kageyama, Tatsuhiro Yoshiki, Takahiro Isono, Tsutomu Tanaka, Choi Jang Kim, Takeshi Yuasa, Yusaku Okada
Jpn J Cancer Res. 2002 May; 93(5): 523–531. doi: 10.1111/j.1349-7006.2002.tb01287.x
PMCID:
PMC5927031
SummaryPDF–7.4M
5.
Architecture of the human interactome defines protein communities and disease networks
Edward L. Huttlin, Raphael J. Bruckner, Joao A. Paulo, Joe R. Cannon, Lily Ting, Kurt Baltier, Greg Colby, Fana Gebreab, Melanie P. Gygi, Hannah Parzen, John Szpyt, Stanley Tam, Gabriela Zarraga, Laura Pontano-Vaites, Sharan Swarup, Anne E. White, Devin K. Schweppe, Ramin Rad, Brian K. Erickson, Robert A. Obar, K.G. Guruharsha, Kejie Li, Spyros Artavanis-Tsakonas, Steven P. Gygi, J. Wade Harper
Nature. Author manuscript; available in PMC 2017 Nov 17.
Published in final edited form as: Nature. 2017 May 25; 545(7655): 505–509. Published online 2017 May 17. doi: 10.1038/nature22366
PMCID:
PMC5531611
AbstractArticlePDF–2.7M
6.
New interaction partners for Nek4.1 and Nek4.2 isoforms: from the DNA damage response to RNA splicing
Fernanda Luisa Basei, Gabriela Vaz Meirelles, Germanna Lima Righetto, Deivid Lucas dos Santos Migueleti, Juliana Helena Costa Smetana, Jörg Kobarg
Proteome Sci. 2015; 13: 11. Published online 2015 Feb 26. doi: 10.1186/s12953-015-0065-6
PMCID:
PMC4367857
AbstractArticlePDF–3.1M
7.
Decreased expression of uroplakin Ia is associated with colorectal cancer progression and poor survival of patients
Yongzhong He, Fandong Kong, Hanpeng Du, Mingjian Wu
Int J Clin Exp Pathol. 2014; 7(8): 5031–5037. Published online 2014 Jul 15.
PMCID:
PMC4152065
AbstractArticlePDF–899K
8.
Reduced Expression of Uroplakin 1A Is Associated with the Poor Prognosis of Gastric Adenocarcinoma Patients
Yan Zheng, Dan-dan Wang, Wei Wang, Ke Pan, Chun-yu Huang, Yuan-fang Li, Qi-Jing Wang, Shu-qiang Yuan, Shan-shan Jiang, Hai-bo Qiu, Yong-ming Chen, Xiao-fei Zhang, Bai-wei Zhao, Cong mai, Jian-chuan Xia, Zhi-wei Zhou
PLoS One. 2014; 9(4): e93073. Published online 2014 Apr 3. doi: 10.1371/journal.pone.0093073
PMCID:
PMC3974733
AbstractArticlePDF–1.3M
9.
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas
Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042
PMCID:
PMC3178059
AbstractArticlePDF–1.0M
10.
Uropathogenic E. coli adhesin-induced host cell receptor conformational changes: implications in transmembrane signaling transduction
Huaibin Wang, Guangwei Min, Rudi Glockshuber, Tung-Tien Sun, Xiang-Peng Kong
J Mol Biol. Author manuscript; available in PMC 2010 Sep 18.
Published in final edited form as: J Mol Biol. 2009 Sep 18; 392(2): 352–361. Published online 2009 Jul 3. doi: 10.1016/j.jmb.2009.06.077
PMCID:
PMC2755582
AbstractArticlePDF–1.5M
11.
Large-Scale Proteomics and Phosphoproteomics of Urinary Exosomes
Patricia A. Gonzales, Trairak Pisitkun, Jason D. Hoffert, Dmitry Tchapyjnikov, Robert A. Star, Robert Kleta, Nam Sun Wang, Mark A. Knepper
J Am Soc Nephrol. 2009 Feb; 20(2): 363–379. doi: 10.1681/ASN.2008040406
PMCID:
PMC2637050
AbstractArticle
12.
Uroplakins Ia and Ib, two major differentiation products of bladder epithelium, belong to a family of four transmembrane domain (4TM) proteins
J Cell Biol. 1994 Apr 1; 125(1): 171–182. doi: 10.1083/jcb.125.1.171
PMCID:
PMC2120008
SummaryPDF–2.1M
13.
Immunohistochemical Analysis of Uroplakins, Urothelial Specific Proteins, in Ovarian Brenner Tumors, Normal Tissues, and Benign and Neoplastic Lesions of the Female Genital Tract
Kumiko Ogawa, Sonny L. Johansson, Samuel M. Cohen
Am J Pathol. 1999 Oct; 155(4): 1047–1050. doi: 10.1016/S0002-9440(10)65206-6
PMCID:
PMC1867018
AbstractArticlePDF–497K
14.
Uroplakin Gene Expression by Normal and Neoplastic Human Urothelium
E. Dawn Lobban, Barbara A. Smith, Geoffrey D. Hall, Patricia Harnden, Paul Roberts, Peter J. Selby, Ludwik K. Trejdosiewicz, Jennifer Southgate
Am J Pathol. 1998 Dec; 153(6): 1957–1967. doi: 10.1016/S0002-9440(10)65709-4
PMCID:
PMC1866332
AbstractArticlePDF–785K
15.
The Status, Quality, and Expansion of the NIH Full-Length cDNA Project: The Mammalian Gene Collection (MGC)
Genome Res. 2004 Oct; 14(10b): 2121–2127. doi: 10.1101/gr.2596504
Correction in:
Genome Res. 2006 Jun; 16(6): 804.
PMCID:
PMC528928
AbstractArticlePDF–140K
16.
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences
Mammalian Gene Collection (MGC) Program Team
Proc Natl Acad Sci U S A. 2002 Dec 24; 99(26): 16899–16903. Published online 2002 Dec 11. doi: 10.1073/pnas.242603899
PMCID:
PMC139241
AbstractArticlePDF–118K
17.
Specific Heterodimer Formation Is a Prerequisite for Uroplakins to Exit from the Endoplasmic Reticulum
Liyu Tu, Tung-Tien Sun, Gert Kreibich
Mol Biol Cell. 2002 Dec; 13(12): 4221–4230. doi: 10.1091/mbc.E02-04-0211
PMCID:
PMC138628
AbstractArticlePDF–458K

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