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Items: 1 to 20 of 24

1.
Functional genomic landscape of cancer-intrinsic evasion of killing by T cells
Keith A. Lawson, Cristovão M. Sousa, Xiaoyu Zhang, Eiru Kim, Rummy Akthar, Joseph J. Caumanns, Yuxi Yao, Nicholas Mikolajewicz, Catherine Ross, Kevin R. Brown, Abdelrahman Abou Zid, Zi Peng Fan, Shirley Hui, Jordan A. Krall, Donald M. Simons, Chloe J. Slater, Victor De Jesus, Lujia Tang, Richa Singh, Joshua E. Goldford, Sarah Martin, Qian Huang, Elizabeth A. Francis, Andrea Habsid, Ryan Climie, David Tieu, Jiarun Wei, Ren Li, Amy Hin Yan Tong, Michael Aregger, Katherine S. Chan, Hong Han, Xiaowei Wang, Patricia Mero, John H. Brumell, Antonio Finelli, Laurie Ailles, Gary Bader, Gromoslaw A. Smolen, Gillian A. Kingsbury, Traver Hart, Charles Kung, Jason Moffat
Nature. Author manuscript; available in PMC 2022 Apr 18.
Published in final edited form as: Nature. 2020 Oct; 586(7827): 120–126. Published online 2020 Sep 23. doi: 10.1038/s41586-020-2746-2
PMCID:
PMC9014559
AbstractArticlePDF–6.6M
2.
Alzheimer’s vulnerable brain region relies on a distinct retromer core dedicated to endosomal recycling
Sabrina Simoes, Jia Guo, Luna Buitrago, Yasir H. Qureshi, Xinyang Feng, Milankumar Kothiya, Etty Cortes, Vivek Patel, Suvarnambiga Kannan, Young-Hyun Kim, Kyu-Tae Chang, Alzheimer’s Disease Neuroimaging Initiative, S. Abid Hussaini, Herman Moreno, Gilbert Di Paolo, Olav M. Andersen, Scott A. Small
Cell Rep. Author manuscript; available in PMC 2022 Jan 27.
Published in final edited form as: Cell Rep. 2021 Dec 28; 37(13): 110182. doi: 10.1016/j.celrep.2021.110182
PMCID:
PMC8792909
AbstractArticlePDF–1.7M
3.
BraInMap elucidates the macromolecular connectivity landscape of mammalian brain
Reza Pourhaghighi, Peter E. A. Ash, Sadhna Phanse, Florian Goebels, Lucas Z. M. Hu, Siwei Chen, Yingying Zhang, Shayne D. Wierbowski, Samantha Boudeau, Mohamed T. Moutaoufik, Ramy H. Malty, Edyta Malolepsza, Kalliopi Tsafou, Aparna Nathan, Graham Cromar, Hongbo Guo, Ali Al Abdullatif, Daniel J. Apicco, Lindsay A. Becker, Aaron D. Gitler, Stefan M. Pulst, Ahmed Youssef, Ryan Hekman, Pierre C. Havugimana, Carl A. White, Benjamin C. Blum, Antonia Ratti, Camron D. Bryant, John Parkinson, Kasper Lage, Mohan Babu, Haiyuan Yu, Gary D. Bader, Benjamin Wolozin, Andrew Emili
Cell Syst. Author manuscript; available in PMC 2021 Apr 22.
Published in final edited form as: Cell Syst. 2020 Apr 22; 10(4): 333–350.e14. doi: 10.1016/j.cels.2020.03.003
Correction in:
Cell Syst. 2020 Aug 26; 11(2): 208.
PMCID:
PMC7938770
AbstractArticlePDF–2.0M
4.
Retromer Binds the FANSHY Sorting Motif in SorLA to Regulate Amyloid Precursor Protein Sorting and Processing
Anja W. Fjorback, Matthew Seaman, Camilla Gustafsen, Arnela Mehmedbasic, Suzanne Gokool, Chengbiao Wu, Daniel Militz, Vanessa Schmidt, Peder Madsen, Jens R. Nyengaard, Thomas E. Willnow, Erik Ilsø Christensen, William B. Mobley, Anders Nykjær, Olav M. Andersen
J Neurosci. 2012 Jan 25; 32(4): 1467–1480. doi: 10.1523/JNEUROSCI.2272-11.2012
PMCID:
PMC6796259
AbstractArticlePDF–3.5M
5.
Novel crosstalk between Vps26a and Nox4 signaling during neurogenesis
Seon-A Choi, Young-Hyun Kim, Young-Ho Park, Hae-Jun Yang, Pil-Soo Jeong, Jae-Jin Cha, Seung-Bin Yoon, Ji-Su Kim, Bong-Seok Song, Jong-Hee Lee, Bo-Woong Sim, Jae-Won Huh, In-Sung Song, Sang-Rae Lee, Min-Kyu Kim, Jin-Man Kim, Yun Soo Bae, Kazuhiko Imakawa, Sun-Uk Kim, Kyu-Tae Chang
Cell Death Differ. 2019 Sep; 26(9): 1582–1599. Published online 2018 Nov 21. doi: 10.1038/s41418-018-0226-0
PMCID:
PMC6748115
AbstractArticlePDF–4.1M
6.
LCP1 preferentially binds clasped αMβ2 integrin and attenuates leukocyte adhesion under flow
Hui-yuan Tseng, Anna V. Samarelli, Patricia Kammerer, Sarah Scholze, Tilman Ziegler, Roland Immler, Roy Zent, Markus Sperandio, Charles R. Sanders, Reinhard Fässler, Ralph T. Böttcher
J Cell Sci. 2018 Nov 15; 131(22): jcs218214. Published online 2018 Nov 21. doi: 10.1242/jcs.218214
PMCID:
PMC6262777
AbstractArticle
7.
VPS35 in Dopamine Neurons Is Required for Endosome-to-Golgi Retrieval of Lamp2a, a Receptor of Chaperone-Mediated Autophagy That Is Critical for α-Synuclein Degradation and Prevention of Pathogenesis of Parkinson's Disease
Fu-Lei Tang, Joanna R. Erion, Yun Tian, Wei Liu, Dong-Min Yin, Jian Ye, Baisha Tang, Lin Mei, Wen-Cheng Xiong
J Neurosci. 2015 Jul 22; 35(29): 10613–10628. doi: 10.1523/JNEUROSCI.0042-15.2015
PMCID:
PMC4510296
AbstractArticlePDF–10M
8.
A unique PDZ domain and arrestin-like fold interaction reveals mechanistic details of endocytic recycling by SNX27-retromer
Matthew Gallon, Thomas Clairfeuille, Florian Steinberg, Caroline Mas, Rajesh Ghai, Richard B. Sessions, Rohan D. Teasdale, Brett M. Collins, Peter J. Cullen
Proc Natl Acad Sci U S A. 2014 Sep 2; 111(35): E3604–E3613. Published online 2014 Aug 18. doi: 10.1073/pnas.1410552111
PMCID:
PMC4156734
AbstractArticlePDF–3.0M
9.
Vps35 haploinsufficiency results in degenerative-like deficit in mouse retinal ganglion neurons and impairment of optic nerve injury-induced gliosis
Wei Liu, Fu-Lei Tang, Joanna Erion, Hang Xiao, Jian Ye, Wen-Cheng Xiong
Mol Brain. 2014; 7: 10. Published online 2014 Feb 11. doi: 10.1186/1756-6606-7-10
PMCID:
PMC4016418
AbstractArticlePDF–3.2M
10.
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas
Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042
PMCID:
PMC3178059
AbstractArticlePDF–1.0M
11.
The cargo-selective retromer complex is a recruiting hub for protein complexes that regulate endosomal tubule dynamics
Michael E. Harbour, Sophia Y. A. Breusegem, Robin Antrobus, Caroline Freeman, Evan Reid, Matthew N. J. Seaman
J Cell Sci. 2010 Nov 1; 123(21): 3703–3717. Published online 2010 Oct 5. doi: 10.1242/jcs.071472
PMCID:
PMC2964111
AbstractArticle
12.
Large-scale gene trapping in C57BL/6N mouse embryonic stem cells
Gwenn M. Hansen, Diane C. Markesich, Michael B. Burnett, Qichao Zhu, Karen M. Dionne, Lizabeth J. Richter, Richard H. Finnell, Arthur T. Sands, Brian P. Zambrowicz, Alejandro Abuin
Genome Res. 2008 Oct; 18(10): 1670–1679. doi: 10.1101/gr.078352.108
PMCID:
PMC2556270
AbstractArticlePDF–493K
13.
Retromer deficiency observed in Alzheimer's disease causes hippocampal dysfunction, neurodegeneration, and Aβ accumulation
Alim Muhammad, Ingrid Flores, Hong Zhang, Rui Yu, Agnieszka Staniszewski, Emmanuel Planel, Mathieu Herman, Lingling Ho, Robert Kreber, Lawrence S. Honig, Barry Ganetzky, Karen Duff, Ottavio Arancio, Scott A. Small
Proc Natl Acad Sci U S A. 2008 May 20; 105(20): 7327–7332. Published online 2008 May 14. doi: 10.1073/pnas.0802545105
PMCID:
PMC2386077
AbstractArticlePDF–596K
14.
Identification of a conserved motif required for Vps35p/Vps26p interaction and assembly of the retromer complex
Suzanne Gokool, Daniel Tattersall, Jonathan V. Reddy, Matthew N. J. Seaman
Biochem J. 2007 Dec 1; 408(Pt 2): 287–295. Prepublished online 2007 Aug 13. Published online 2007 Nov 14. doi: 10.1042/BJ20070555
PMCID:
PMC2267345
AbstractArticlePDF–946K
15.
Cargo-selective endosomal sorting for retrieval to the Golgi requires retromer
Matthew N.J. Seaman
J Cell Biol. 2004 Apr 12; 165(1): 111–122. doi: 10.1083/jcb.200312034
PMCID:
PMC2172078
AbstractArticlePDF–3.2M
16.
Genetic evidence for a mammalian retromer complex containing sorting nexins 1 and 2
Courtney T. Griffin, JoAnn Trejo, Terry Magnuson
Proc Natl Acad Sci U S A. 2005 Oct 18; 102(42): 15173–15177. Published online 2005 Oct 7. doi: 10.1073/pnas.0409558102
PMCID:
PMC1257690
AbstractArticlePDF–409K
17.
The Status, Quality, and Expansion of the NIH Full-Length cDNA Project: The Mammalian Gene Collection (MGC)
Genome Res. 2004 Oct; 14(10b): 2121–2127. doi: 10.1101/gr.2596504
Correction in:
Genome Res. 2006 Jun; 16(6): 804.
PMCID:
PMC528928
AbstractArticlePDF–140K
18.
RIKEN Integrated Sequence Analysis (RISA) System—384-Format Sequencing Pipeline with 384 Multicapillary Sequencer
Kazuhiro Shibata, Masayoshi Itoh, Katsunori Aizawa, Sumiharu Nagaoka, Nobuya Sasaki, Piero Carninci, Hideaki Konno, Junichi Akiyama, Katsuo Nishi, Tokuji Kitsunai, Hideo Tashiro, Mari Itoh, Noriko Sumi, Yoshiyuki Ishii, Shin Nakamura, Makoto Hazama, Tsutomu Nishine, Akira Harada, Rintaro Yamamoto, Hiroyuki Matsumoto, Sumito Sakaguchi, Takashi Ikegami, Katsuya Kashiwagi, Syuji Fujiwake, Kouji Inoue, Yoshiyuki Togawa, Masaki Izawa, Eiji Ohara, Masanori Watahiki, Yuko Yoneda, Tomokazu Ishikawa, Kaori Ozawa, Takumi Tanaka, Shuji Matsuura, Jun Kawai, Yasushi Okazaki, Masami Muramatsu, Yorinao Inoue, Akira Kira, Yoshihide Hayashizaki
Genome Res. 2000 Nov; 10(11): 1757–1771. doi: 10.1101/gr.152600
PMCID:
PMC310992
AbstractArticlePDF–3.4M
19.
Normalization and Subtraction of Cap-Trapper-Selected cDNAs to Prepare Full-Length cDNA Libraries for Rapid Discovery of New Genes
Piero Carninci, Yuko Shibata, Norihito Hayatsu, Yuichi Sugahara, Kazuhiro Shibata, Masayoshi Itoh, Hideaki Konno, Yasushi Okazaki, Masami Muramatsu, Yoshihide Hayashizaki
Genome Res. 2000 Oct; 10(10): 1617–1630. doi: 10.1101/gr.145100
PMCID:
PMC310980
AbstractArticlePDF–1.4M
20.
Wnk1 kinase deficiency lowers blood pressure in mice: A gene-trap screen to identify potential targets for therapeutic intervention
Brian P. Zambrowicz, Alejandro Abuin, Ramiro Ramirez-Solis, Lizabeth J. Richter, James Piggott, Hector BeltrandelRio, Eric C. Buxton, Joel Edwards, Rick A. Finch, Carl J. Friddle, Anupma Gupta, Gwenn Hansen, Yi Hu, Wenhu Huang, Crystal Jaing, Billie Wayne Key, Jr., Peter Kipp, Buckley Kohlhauff, Zhi-Qing Ma, Diane Markesich, Robert Payne, David G. Potter, Ny Qian, Joseph Shaw, Jeff Schrick, Zheng-Zheng Shi, Mary Jean Sparks, Isaac Van Sligtenhorst, Peter Vogel, Wade Walke, Nianhua Xu, Qichao Zhu, Christophe Person, Arthur T. Sands
Proc Natl Acad Sci U S A. 2003 Nov 25; 100(24): 14109–14114. Published online 2003 Nov 10. doi: 10.1073/pnas.2336103100
Correction in:
Proc Natl Acad Sci U S A. 2004 Mar 23; 101(12): 4332.
PMCID:
PMC283554
AbstractArticlePDF–481K

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