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Items: 1 to 20 of 24

1.
Isoform-specific and ubiquitination dependent recruitment of Tet1 to replicating heterochromatin modulates methylcytosine oxidation
María Arroyo, Florian D. Hastert, Andreas Zhadan, Florian Schelter, Susanne Zimbelmann, Cathia Rausch, Anne K. Ludwig, Thomas Carell, M. Cristina Cardoso
Nat Commun. 2022; 13: 5173. Published online 2022 Sep 2. doi: 10.1038/s41467-022-32799-8
Correction in:
Nat Commun. 2023; 14: 369.
PMCID:
PMC9440122
AbstractArticlePDF–9.3M
2.
BraInMap elucidates the macromolecular connectivity landscape of mammalian brain
Reza Pourhaghighi, Peter E. A. Ash, Sadhna Phanse, Florian Goebels, Lucas Z. M. Hu, Siwei Chen, Yingying Zhang, Shayne D. Wierbowski, Samantha Boudeau, Mohamed T. Moutaoufik, Ramy H. Malty, Edyta Malolepsza, Kalliopi Tsafou, Aparna Nathan, Graham Cromar, Hongbo Guo, Ali Al Abdullatif, Daniel J. Apicco, Lindsay A. Becker, Aaron D. Gitler, Stefan M. Pulst, Ahmed Youssef, Ryan Hekman, Pierre C. Havugimana, Carl A. White, Benjamin C. Blum, Antonia Ratti, Camron D. Bryant, John Parkinson, Kasper Lage, Mohan Babu, Haiyuan Yu, Gary D. Bader, Benjamin Wolozin, Andrew Emili
Cell Syst. Author manuscript; available in PMC 2021 Apr 22.
Published in final edited form as: Cell Syst. 2020 Apr 22; 10(4): 333–350.e14. doi: 10.1016/j.cels.2020.03.003
Correction in:
Cell Syst. 2020 Aug 26; 11(2): 208.
PMCID:
PMC7938770
AbstractArticlePDF–2.0M
3.
The E3 ubiquitin ligase Cul4b promotes CD4+ T cell expansion by aiding the repair of damaged DNA
Asif A. Dar, Keisuke Sawada, Joseph M. Dybas, Emily K. Moser, Emma L. Lewis, Eddie Park, Hossein Fazelinia, Lynn A. Spruce, Hua Ding, Steven H. Seeholzer, Paula M. Oliver
PLoS Biol. 2021 Feb; 19(2): e3001041. Published online 2021 Feb 1. doi: 10.1371/journal.pbio.3001041
PMCID:
PMC7888682
AbstractArticlePDF–4.5M
4.
DCAF1 regulates Treg senescence via the ROS axis during immunological aging
Zengli Guo, Gang Wang, Bing Wu, Wei-Chun Chou, Liang Cheng, Chenlin Zhou, Jitong Lou, Di Wu, Lishan Su, Junnian Zheng, Jenny P.-Y. Ting, Yisong Y. Wan
J Clin Invest. 2020 Nov 2; 130(11): 5893–5908. Published online 2020 Oct 5. doi: 10.1172/JCI136466
PMCID:
PMC7598062
AbstractArticlePDF–8.4M
5.
VprBP mitigates TGF-β and Activin signaling by promoting Smurf1-mediated type I receptor degradation
Yihao Li, Chao Cui, Feng Xie, Szymon Kiełbasa, Hailiang Mei, Maarten van Dinther, Hans van Dam, Andreas Bauer, Long Zhang, Peter ten Dijke
J Mol Cell Biol. 2020 Feb; 12(2): 138–151. Published online 2019 Jul 10. doi: 10.1093/jmcb/mjz057
PMCID:
PMC7109606
AbstractArticlePDF–1.9M
6.
VprBP/DCAF1 Regulates RAG1 Expression Independently of Dicer by Mediating RAG1 Degradation
N. Max Schabla, Greg A. Perry, Victoria L. Palmer, Patrick C. Swanson
J Immunol. Author manuscript; available in PMC 2019 Aug 1.
Published in final edited form as: J Immunol. 2018 Aug 1; 201(3): 930–939. Published online 2018 Jun 20. doi: 10.4049/jimmunol.1800054
PMCID:
PMC6084458
AbstractArticlePDF–1.4M
7.
DCAF1 controls T-cell function via p53-dependent and -independent mechanisms
Zengli Guo, Qing Kong, Cui Liu, Song Zhang, Liyun Zou, Feng Yan, Jason K. Whitmire, Yue Xiong, Xian Chen, Yisong Y. Wan
Nat Commun. 2016; 7: 10307. Published online 2016 Jan 5. doi: 10.1038/ncomms10307
PMCID:
PMC4728445
AbstractArticlePDF–1.6M
8.
VprBP is required for efficient editing and selection of Igκ+ B cells, but is dispensable for Igλ+ and marginal zone B cell maturation and selection
Victoria L. Palmer, Razia Aziz-Seible, Michele D. Kassmeier, Mary Rothermund, Greg A. Perry, Patrick C. Swanson
J Immunol. Author manuscript; available in PMC 2016 Aug 15.
Published in final edited form as: J Immunol. 2015 Aug 15; 195(4): 1524–1537. Published online 2015 Jul 6. doi: 10.4049/jimmunol.1500952
PMCID:
PMC4530030
AbstractArticlePDF–3.5M
9.
CRL4VprBP E3 ligase promotes monoubiquitylation and chromatin binding of TET dioxygenases
Tadashi Nakagawa, Lei Lv, Makiko Nakagawa, Yanbao Yu, Chao Yu, Ana C. D’Alessio, Keiko Nakayama, Heng-Yu Fan, Xian Chen, Yue Xiong
Mol Cell. Author manuscript; available in PMC 2016 Jan 22.
Published in final edited form as: Mol Cell. 2015 Jan 22; 57(2): 247–260. Published online 2014 Dec 31. doi: 10.1016/j.molcel.2014.12.002
Correction in:
volume 59 on page 1043
PMCID:
PMC4304937
AbstractArticlePDF–2.5M
10.
The Central Role of EED in the Orchestration of Polycomb Group Complexes
Qi Cao, Xiaoju Wang, Meng Zhao, Rendong Yang, Rohit Malik, Yuanyuan Qiao, Anton Poliakov, Anastasia K. Yocum, Yong Li, Wei Chen, Xuhong Cao, Xia Jiang, Arun Dahiya, Clair Harris, Felix Y. Feng, Sundeep Kalantry, Zhaohui S. Qin, Saravana M. Dhanasekaran, Arul M. Chinnaiyan
Nat Commun. Author manuscript; available in PMC 2014 Jul 24.
Published in final edited form as: Nat Commun. 2014; 5: 3127. doi: 10.1038/ncomms4127
PMCID:
PMC4073494
AbstractArticlePDF–2.1M
11.
A conditional knockout resource for the genome–wide study of mouse gene function
William C. Skarnes, Barry Rosen, Anthony P. West, Manousos Koutsourakis, Wendy Bushell, Vivek Iyer, Alejandro O. Mujica, Mark Thomas, Jennifer Harrow, Tony Cox, David Jackson, Jessica Severin, Patrick Biggs, Jun Fu, Michael Nefedov, Pieter J. de Jong, A. Francis Stewart, Allan Bradley
Nature. Author manuscript; available in PMC 2013 Feb 14.
Published in final edited form as: Nature. 2011 Jun 15; 474(7351): 337–342. Published online 2011 Jun 15. doi: 10.1038/nature10163
PMCID:
PMC3572410
AbstractArticlePDF–1.1M
12.
VprBP binds full-length RAG1 and is required for B-cell development and V(D)J recombination fidelity
Michele D Kassmeier, Koushik Mondal, Victoria L Palmer, Prafulla Raval, Sushil Kumar, Greg A Perry, Dirk K Anderson, Pawel Ciborowski, Sarah Jackson, Yue Xiong, Patrick C Swanson
EMBO J. 2012 Feb 15; 31(4): 945–958. Published online 2011 Dec 13. doi: 10.1038/emboj.2011.455
PMCID:
PMC3280554
AbstractArticlePDF–1.4M
13.
Vpr-Binding Protein Antagonizes p53-Mediated Transcription via Direct Interaction with H3 Tail
Kyunghwan Kim, Kyu Heo, Jongkyu Choi, Sarah Jackson, Hyunjung Kim, Yue Xiong, Woojin An
Mol Cell Biol. 2012 Feb; 32(4): 783–796. doi: 10.1128/MCB.06037-11
Correction in:
Mol Cell Biol. 2017 Aug 1; 37(15): e00254-17.
PMCID:
PMC3272969
AbstractArticlePDF–3.5M
14.
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas
Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042
PMCID:
PMC3178059
AbstractArticlePDF–1.0M
15.
A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo
Graciana Diez-Roux, Sandro Banfi, Marc Sultan, Lars Geffers, Santosh Anand, David Rozado, Alon Magen, Elena Canidio, Massimiliano Pagani, Ivana Peluso, Nathalie Lin-Marq, Muriel Koch, Marchesa Bilio, Immacolata Cantiello, Roberta Verde, Cristian De Masi, Salvatore A. Bianchi, Juliette Cicchini, Elodie Perroud, Shprese Mehmeti, Emilie Dagand, Sabine Schrinner, Asja Nürnberger, Katja Schmidt, Katja Metz, Christina Zwingmann, Norbert Brieske, Cindy Springer, Ana Martinez Hernandez, Sarah Herzog, Frauke Grabbe, Cornelia Sieverding, Barbara Fischer, Kathrin Schrader, Maren Brockmeyer, Sarah Dettmer, Christin Helbig, Violaine Alunni, Marie-Annick Battaini, Carole Mura, Charlotte N. Henrichsen, Raquel Garcia-Lopez, Diego Echevarria, Eduardo Puelles, Elena Garcia-Calero, Stefan Kruse, Markus Uhr, Christine Kauck, Guangjie Feng, Nestor Milyaev, Chuang Kee Ong, Lalit Kumar, MeiSze Lam, Colin A. Semple, Attila Gyenesei, Stefan Mundlos, Uwe Radelof, Hans Lehrach, Paolo Sarmientos, Alexandre Reymond, Duncan R. Davidson, Pascal Dollé, Stylianos E. Antonarakis, Marie-Laure Yaspo, Salvador Martinez, Richard A. Baldock, Gregor Eichele, Andrea Ballabio
PLoS Biol. 2011 Jan; 9(1): e1000582. Published online 2011 Jan 18. doi: 10.1371/journal.pbio.1000582
PMCID:
PMC3022534
AbstractArticlePDF–3.8M
16.
Large-scale gene trapping in C57BL/6N mouse embryonic stem cells
Gwenn M. Hansen, Diane C. Markesich, Michael B. Burnett, Qichao Zhu, Karen M. Dionne, Lizabeth J. Richter, Richard H. Finnell, Arthur T. Sands, Brian P. Zambrowicz, Alejandro Abuin
Genome Res. 2008 Oct; 18(10): 1670–1679. doi: 10.1101/gr.078352.108
PMCID:
PMC2556270
AbstractArticlePDF–493K
17.
Human Immunodeficiency Virus Type 1 Vpr-Binding Protein VprBP, a WD40 Protein Associated with the DDB1-CUL4 E3 Ubiquitin Ligase, Is Essential for DNA Replication and Embryonic Development
Chad M. McCall, Paula L. Miliani de Marval, Paul D. Chastain, II, Sarah C. Jackson, Yizhou J. He, Yojiro Kotake, Jeanette Gowen Cook, Yue Xiong
Mol Cell Biol. 2008 Sep; 28(18): 5621–5633. Published online 2008 Jul 7. doi: 10.1128/MCB.00232-08
PMCID:
PMC2546929
AbstractArticlePDF–1.0M
18.
RIKEN Integrated Sequence Analysis (RISA) System—384-Format Sequencing Pipeline with 384 Multicapillary Sequencer
Kazuhiro Shibata, Masayoshi Itoh, Katsunori Aizawa, Sumiharu Nagaoka, Nobuya Sasaki, Piero Carninci, Hideaki Konno, Junichi Akiyama, Katsuo Nishi, Tokuji Kitsunai, Hideo Tashiro, Mari Itoh, Noriko Sumi, Yoshiyuki Ishii, Shin Nakamura, Makoto Hazama, Tsutomu Nishine, Akira Harada, Rintaro Yamamoto, Hiroyuki Matsumoto, Sumito Sakaguchi, Takashi Ikegami, Katsuya Kashiwagi, Syuji Fujiwake, Kouji Inoue, Yoshiyuki Togawa, Masaki Izawa, Eiji Ohara, Masanori Watahiki, Yuko Yoneda, Tomokazu Ishikawa, Kaori Ozawa, Takumi Tanaka, Shuji Matsuura, Jun Kawai, Yasushi Okazaki, Masami Muramatsu, Yorinao Inoue, Akira Kira, Yoshihide Hayashizaki
Genome Res. 2000 Nov; 10(11): 1757–1771. doi: 10.1101/gr.152600
PMCID:
PMC310992
AbstractArticlePDF–3.4M
19.
Normalization and Subtraction of Cap-Trapper-Selected cDNAs to Prepare Full-Length cDNA Libraries for Rapid Discovery of New Genes
Piero Carninci, Yuko Shibata, Norihito Hayatsu, Yuichi Sugahara, Kazuhiro Shibata, Masayoshi Itoh, Hideaki Konno, Yasushi Okazaki, Masami Muramatsu, Yoshihide Hayashizaki
Genome Res. 2000 Oct; 10(10): 1617–1630. doi: 10.1101/gr.145100
PMCID:
PMC310980
AbstractArticlePDF–1.4M
20.
Wnk1 kinase deficiency lowers blood pressure in mice: A gene-trap screen to identify potential targets for therapeutic intervention
Brian P. Zambrowicz, Alejandro Abuin, Ramiro Ramirez-Solis, Lizabeth J. Richter, James Piggott, Hector BeltrandelRio, Eric C. Buxton, Joel Edwards, Rick A. Finch, Carl J. Friddle, Anupma Gupta, Gwenn Hansen, Yi Hu, Wenhu Huang, Crystal Jaing, Billie Wayne Key, Jr., Peter Kipp, Buckley Kohlhauff, Zhi-Qing Ma, Diane Markesich, Robert Payne, David G. Potter, Ny Qian, Joseph Shaw, Jeff Schrick, Zheng-Zheng Shi, Mary Jean Sparks, Isaac Van Sligtenhorst, Peter Vogel, Wade Walke, Nianhua Xu, Qichao Zhu, Christophe Person, Arthur T. Sands
Proc Natl Acad Sci U S A. 2003 Nov 25; 100(24): 14109–14114. Published online 2003 Nov 10. doi: 10.1073/pnas.2336103100
Correction in:
Proc Natl Acad Sci U S A. 2004 Mar 23; 101(12): 4332.
PMCID:
PMC283554
AbstractArticlePDF–481K

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