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Items: 1 to 20 of 21

1.
BraInMap elucidates the macromolecular connectivity landscape of mammalian brain
Reza Pourhaghighi, Peter E. A. Ash, Sadhna Phanse, Florian Goebels, Lucas Z. M. Hu, Siwei Chen, Yingying Zhang, Shayne D. Wierbowski, Samantha Boudeau, Mohamed T. Moutaoufik, Ramy H. Malty, Edyta Malolepsza, Kalliopi Tsafou, Aparna Nathan, Graham Cromar, Hongbo Guo, Ali Al Abdullatif, Daniel J. Apicco, Lindsay A. Becker, Aaron D. Gitler, Stefan M. Pulst, Ahmed Youssef, Ryan Hekman, Pierre C. Havugimana, Carl A. White, Benjamin C. Blum, Antonia Ratti, Camron D. Bryant, John Parkinson, Kasper Lage, Mohan Babu, Haiyuan Yu, Gary D. Bader, Benjamin Wolozin, Andrew Emili
Cell Syst. Author manuscript; available in PMC 2021 Apr 22.
Published in final edited form as: Cell Syst. 2020 Apr 22; 10(4): 333–350.e14. doi: 10.1016/j.cels.2020.03.003
Correction in:
Cell Syst. 2020 Aug 26; 11(2): 208.
PMCID:
PMC7938770
AbstractArticlePDF–2.0M
2.
A high resolution spatiotemporal atlas of gene expression of the developing mouse brain
Carol L. Thompson, Lydia Ng, Vilas Menon, Salvador Martinez, Chang-Kyu Lee, Katie Glattfelder, Susan M. Sunkin, Alex Henry, Christopher Lau, Chinh Dang, Raquel Garcia-Lopez, Almudena Martinez-Ferre, Ana Pombero, John L.R. Rubenstein, Wayne B. Wakeman, John Hohmann, Nick Dee, Andrew J. Sodt, Rob Young, Kimberly Smith, Thuc-Nghi Nguyen, Jolene Kidney, Leonard Kuan, Andreas Jeromin, Ajamete Kaykas, Jeremy Miller, Damon Page, Geri Orta, Amy Bernard, Zackery Riley, Simon Smith, Paul Wohnoutka, Mike Hawrylycz, Luis Puelles, Allan R. Jones
Neuron. Author manuscript; available in PMC 2015 Jul 16.
Published in final edited form as: Neuron. 2014 Jul 16; 83(2): 309–323. Published online 2014 Jun 19. doi: 10.1016/j.neuron.2014.05.033
PMCID:
PMC4319559
AbstractArticlePDF–3.0M
3.
Insm1 promotes endocrine cell differentiation by modulating the expression of a network of genes that includes Neurog3 and Ripply3
Anna B. Osipovich, Qiaoming Long, Elisabetta Manduchi, Rama Gangula, Susan B. Hipkens, Judsen Schneider, Tadashi Okubo, Christian J. Stoeckert, Jr, Shinji Takada, Mark A. Magnuson
Development. 2014 Aug; 141(15): 2939–2949. doi: 10.1242/dev.104810
PMCID:
PMC4197673
AbstractArticle
4.
The chromatin-binding protein HMGN3 stimulates histone acetylation and transcription across the Glyt1 gene
Gráinne Barkess, Yuri Postnikov, Chrisanne D. Campos, Shivam Mishra, Gokula Mohan, Sakshi Verma, Michael Bustin, Katherine L. West
Biochem J. Author manuscript; available in PMC 2013 Jul 16.
Published in final edited form as: Biochem J. 2012 Mar 15; 442(3): 495–505. doi: 10.1042/BJ20111502
PMCID:
PMC3713072
AbstractArticlePDF–1.0M
5.
High Mobility Group N Proteins Modulate the Fidelity of the Cellular Transcriptional Profile in a Tissue- and Variant-specific Manner
Jamie E. Kugler, Marion Horsch, Di Huang, Takashi Furusawa, Mark Rochman, Lillian Garrett, Lore Becker, Alexander Bohla, Sabine M. Hölter, Cornelia Prehn, Birgit Rathkolb, Ildikó Racz, Juan Antonio Aguilar-Pimentel, Thure Adler, Jerzy Adamski, Johannes Beckers, Dirk H. Busch, Oliver Eickelberg, Thomas Klopstock, Markus Ollert, Tobias Stöger, Eckhard Wolf, Wolfgang Wurst, Ali Önder Yildirim, Andreas Zimmer, Valérie Gailus-Durner, Helmut Fuchs, Martin Hrabě de Angelis, Benny Garfinkel, Joseph Orly, Ivan Ovcharenko, Michael Bustin
J Biol Chem. 2013 Jun 7; 288(23): 16690–16703. Published online 2013 Apr 24. doi: 10.1074/jbc.M113.463315
PMCID:
PMC3675603
AbstractArticlePDF–2.4M
6.
Placental PPARγ Regulates Spatiotemporally Diverse Genes And A Unique Metabolic Network
Tali Shalom-Barak, Xiaowen Zhang, Tianjiao Chu, W. Timothy Schaiff, Janardan K. Reddy, Jianming Xu, Yoel Sadovsky, Yaacov Barak
Dev Biol. Author manuscript; available in PMC 2013 Dec 1.
Published in final edited form as: Dev Biol. 2012 Dec 1; 372(1): 143–155. Published online 2012 Aug 29. doi: 10.1016/j.ydbio.2012.08.021
PMCID:
PMC3479343
AbstractArticlePDF–3.8M
7.
The Nucleosome Binding Protein HMGN3 Is Expressed in Pancreatic α-Cells and Affects Plasma Glucagon Levels in Mice
Toshihiro Kurahashi, Takashi Furusawa, Tetsuya Ueda, Michael Bustin
J Cell Biochem. Author manuscript; available in PMC 2012 Jul 23.
Published in final edited form as: J Cell Biochem. 2010 Jan 1; 109(1): 49–57. doi: 10.1002/jcb.22377
PMCID:
PMC3402347
AbstractArticlePDF–1.6M
8.
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas
Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042
PMCID:
PMC3178059
AbstractArticlePDF–1.0M
9.
A Systems Approach Reveals that the Myogenesis Genome Network Is Regulated by the Transcriptional Repressor RP58
Shigetoshi Yokoyama, Yoshiaki Ito, Hiroe Ueno-Kudoh, Hirohito Shimizu, Kenta Uchibe, Sonia Albini, Kazuhiko Mitsuoka, Shigeru Miyaki, Minako Kiso, Akane Nagai, Tomohiro Hikata, Tadahiro Osada, Noritsugu Fukuda, Satoshi Yamashita, Daisuke Harada, Valeria Mezzano, Masataka Kasai, Pier Lorenzo Puri, Yoshihide Hayashizaki, Haruo Okado, Megumi Hashimoto, Hiroshi Asahara
Dev Cell. Author manuscript; available in PMC 2011 Jun 7.
Published in final edited form as: Dev Cell. 2009 Dec; 17(6): 836–848. doi: 10.1016/j.devcel.2009.10.011
PMCID:
PMC3110151
AbstractArticlePDF–2.0M
10.
Effects of HMGN variants on the cellular transcription profile
Mark Rochman, Leila Taher, Toshihiro Kurahashi, Srujana Cherukuri, Vladimir N. Uversky, David Landsman, Ivan Ovcharenko, Michael Bustin
Nucleic Acids Res. 2011 May; 39(10): 4076–4087. Published online 2011 Feb 2. doi: 10.1093/nar/gkq1343
PMCID:
PMC3105402
AbstractArticlePDF–7.2M
11.
A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo
Graciana Diez-Roux, Sandro Banfi, Marc Sultan, Lars Geffers, Santosh Anand, David Rozado, Alon Magen, Elena Canidio, Massimiliano Pagani, Ivana Peluso, Nathalie Lin-Marq, Muriel Koch, Marchesa Bilio, Immacolata Cantiello, Roberta Verde, Cristian De Masi, Salvatore A. Bianchi, Juliette Cicchini, Elodie Perroud, Shprese Mehmeti, Emilie Dagand, Sabine Schrinner, Asja Nürnberger, Katja Schmidt, Katja Metz, Christina Zwingmann, Norbert Brieske, Cindy Springer, Ana Martinez Hernandez, Sarah Herzog, Frauke Grabbe, Cornelia Sieverding, Barbara Fischer, Kathrin Schrader, Maren Brockmeyer, Sarah Dettmer, Christin Helbig, Violaine Alunni, Marie-Annick Battaini, Carole Mura, Charlotte N. Henrichsen, Raquel Garcia-Lopez, Diego Echevarria, Eduardo Puelles, Elena Garcia-Calero, Stefan Kruse, Markus Uhr, Christine Kauck, Guangjie Feng, Nestor Milyaev, Chuang Kee Ong, Lalit Kumar, MeiSze Lam, Colin A. Semple, Attila Gyenesei, Stefan Mundlos, Uwe Radelof, Hans Lehrach, Paolo Sarmientos, Alexandre Reymond, Duncan R. Davidson, Pascal Dollé, Stylianos E. Antonarakis, Marie-Laure Yaspo, Salvador Martinez, Richard A. Baldock, Gregor Eichele, Andrea Ballabio
PLoS Biol. 2011 Jan; 9(1): e1000582. Published online 2011 Jan 18. doi: 10.1371/journal.pbio.1000582
PMCID:
PMC3022534
AbstractArticlePDF–3.8M
12.
The Nucleosome Binding Protein HMGN3 Modulates the Transcription Profile of Pancreatic β Cells and Affects Insulin Secretion
Tetsuya Ueda, Takashi Furusawa, Toshihiro Kurahashi, Lino Tessarollo, Michael Bustin
Mol Cell Biol. 2009 Oct; 29(19): 5264–5276. Published online 2009 Aug 3. doi: 10.1128/MCB.00526-09
PMCID:
PMC2747976
AbstractArticlePDF–3.0M
13.
Microarray analysis of Foxa2 mutant mouse embryos reveals novel gene expression and inductive roles for the gastrula organizer and its derivatives
Owen J Tamplin, Doris Kinzel, Brian J Cox, Christine E Bell, Janet Rossant, Heiko Lickert
BMC Genomics. 2008; 9: 511. Published online 2008 Oct 30. doi: 10.1186/1471-2164-9-511
PMCID:
PMC2605479
AbstractArticlePDF–1.7M
14.
Differential expression of the HMGN family of chromatin proteins during ocular development
Michelle M. Lucey, Yan Wang, Michael Bustin, Melinda K. Duncan
Gene Expr Patterns. Author manuscript; available in PMC 2009 Jul 1.
Published in final edited form as: Gene Expr Patterns. 2008 Jul; 8(6): 433–437. Published online 2008 Apr 22. doi: 10.1016/j.gep.2008.04.002
PMCID:
PMC2525792
AbstractArticlePDF–1.9M
15.
Identification of transcripts with enriched expression in the developing and adult pancreas
Brad G Hoffman, Bogard Zavaglia, Joy Witzsche, Teresa Ruiz de Algara, Mike Beach, Pamela A Hoodless, Steven JM Jones, Marco A Marra, Cheryl D Helgason
Genome Biol. 2008; 9(6): R99. Published online 2008 Jun 14. doi: 10.1186/gb-2008-9-6-r99
PMCID:
PMC2481431
AbstractArticlePDF–2.2M
16.
BGEM: An In Situ Hybridization Database of Gene Expression in the Embryonic and Adult Mouse Nervous System
Susan Magdaleno, Patricia Jensen, Craig L Brumwell, Anna Seal, Karen Lehman, Andrew Asbury, Tony Cheung, Tommie Cornelius, Diana M Batten, Christopher Eden, Shannon M Norland, Dennis S Rice, Nilesh Dosooye, Sundeep Shakya, Perdeep Mehta, Tom Curran
PLoS Biol. 2006 Apr; 4(4): e86. Published online 2006 Mar 28. doi: 10.1371/journal.pbio.0040086
PMCID:
PMC1413568
ArticlePDF–99K
17.
The Status, Quality, and Expansion of the NIH Full-Length cDNA Project: The Mammalian Gene Collection (MGC)
Genome Res. 2004 Oct; 14(10b): 2121–2127. doi: 10.1101/gr.2596504
Correction in:
Genome Res. 2006 Jun; 16(6): 804.
PMCID:
PMC528928
AbstractArticlePDF–140K
18.
Chromosomal Proteins HMGN3a and HMGN3b Regulate the Expression of Glycine Transporter 1
Katherine L. West, Meryl A. Castellini, Melinda K. Duncan, Michael Bustin
Mol Cell Biol. 2004 May; 24(9): 3747–3756. doi: 10.1128/MCB.24.9.3747-3756.2004
PMCID:
PMC387732
AbstractArticlePDF–596K
19.
RIKEN Integrated Sequence Analysis (RISA) System—384-Format Sequencing Pipeline with 384 Multicapillary Sequencer
Kazuhiro Shibata, Masayoshi Itoh, Katsunori Aizawa, Sumiharu Nagaoka, Nobuya Sasaki, Piero Carninci, Hideaki Konno, Junichi Akiyama, Katsuo Nishi, Tokuji Kitsunai, Hideo Tashiro, Mari Itoh, Noriko Sumi, Yoshiyuki Ishii, Shin Nakamura, Makoto Hazama, Tsutomu Nishine, Akira Harada, Rintaro Yamamoto, Hiroyuki Matsumoto, Sumito Sakaguchi, Takashi Ikegami, Katsuya Kashiwagi, Syuji Fujiwake, Kouji Inoue, Yoshiyuki Togawa, Masaki Izawa, Eiji Ohara, Masanori Watahiki, Yuko Yoneda, Tomokazu Ishikawa, Kaori Ozawa, Takumi Tanaka, Shuji Matsuura, Jun Kawai, Yasushi Okazaki, Masami Muramatsu, Yorinao Inoue, Akira Kira, Yoshihide Hayashizaki
Genome Res. 2000 Nov; 10(11): 1757–1771. doi: 10.1101/gr.152600
PMCID:
PMC310992
AbstractArticlePDF–3.4M
20.
Normalization and Subtraction of Cap-Trapper-Selected cDNAs to Prepare Full-Length cDNA Libraries for Rapid Discovery of New Genes
Piero Carninci, Yuko Shibata, Norihito Hayatsu, Yuichi Sugahara, Kazuhiro Shibata, Masayoshi Itoh, Hideaki Konno, Yasushi Okazaki, Masami Muramatsu, Yoshihide Hayashizaki
Genome Res. 2000 Oct; 10(10): 1617–1630. doi: 10.1101/gr.145100
PMCID:
PMC310980
AbstractArticlePDF–1.4M

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