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Select item 94838131.

Eomes function is conserved between zebrafish and mouse and controls left-right organiser progenitor gene expression via interlocking feedforward loops

Conor D. Talbot, Mark D. Walsh, Stephen J. Cutty, Randa Elsayed, Eirini Vlachaki, Ashley E. E. Bruce, Fiona C. Wardle, Andrew C. Nelson

Front Cell Dev Biol. 2022; 10: 982477. Published online 2022 Aug 25. doi: 10.3389/fcell.2022.982477

PMCID:: PMC9483813

Abstract Article PDF–2.5M

Select item 88740212.

Defining the Pluripotent Marker Genes for Identification of Teleost Fish Cell Pluripotency During Reprogramming

Huajin Li, Wenting Xu, Sijia Xiang, Leiting Tao, Wen Fu, Jinhui Liu, Wenbin Liu, Yamei Xiao, Liangyue Peng

Front Genet. 2022; 13: 819682. Published online 2022 Feb 11. doi: 10.3389/fgene.2022.819682

PMCID:: PMC8874021

Abstract Article PDF–2.7M

Select item 67718763.

A novel conserved enhancer at zebrafish zic3 and zic6 loci drives neural expression

Rashid Minhas, Aleksandra Paterek, Maciej Łapiński, Michał Bazała, Vladimir Korzh, Cecilia L. Winata

Dev Dyn. 2019 Sep; 248(9): 837–849. Published online 2019 Jun 24. doi: 10.1002/dvdy.69

PMCID:: PMC6771876

Abstract Article PDF–5.9M

Select item 66654844.

Stem Cells in the Adult Zebrafish Cerebellum: Initiation and Maintenance of a Novel Stem Cell Niche

Jan Kaslin, Julia Ganz, Michaela Geffarth, Heiner Grandel, Stefan Hans, Michael Brand

J Neurosci. 2009 May 13; 29(19): 6142–6153. doi: 10.1523/JNEUROSCI.0072-09.2009

PMCID:: PMC6665484

Abstract Article PDF–888K

Select item 60980045.

A novel ZIC3 gene mutation identified in patients with heterotaxy and congenital heart disease

Shuolin Li, Sida Liu, Weicheng Chen, Yuan Yuan, Ruoyi Gu, Yangliu Song, Jian Li, Yinyin Cao, Yixiang Lin, Jun Xu, Huijun Wang, Duan Ma, Xiaojing Ma, Wei Sheng, Guoying Huang

Sci Rep. 2018; 8: 12386. Published online 2018 Aug 17. doi: 10.1038/s41598-018-30204-3

PMCID:: PMC6098004

Abstract Article PDF–3.3M

Select item 52931146.

Transcriptomic, proteomic, and metabolomic landscape of positional memory in the caudal fin of zebrafish

Jeremy S. Rabinowitz, Aaron M. Robitaille, Yuliang Wang, Catherine A. Ray, Ryan Thummel, Haiwei Gu, Danijel Djukovic, Daniel Raftery, Jason D. Berndt, Randall T. Moon

Proc Natl Acad Sci U S A. 2017 Jan 31; 114(5): E717–E726. Published online 2017 Jan 17. doi: 10.1073/pnas.1620755114

PMCID:: PMC5293114

Abstract Article PDF–1.1M

Select item 50570817.

Functional visualization and disruption of targeted genes using CRISPR/Cas9-mediated eGFP reporter integration in zebrafish

Satoshi Ota, Kiyohito Taimatsu, Kanoko Yanagi, Tomohiro Namiki, Rie Ohga, Shin-ichi Higashijima, Atsuo Kawahara

Sci Rep. 2016; 6: 34991. Published online 2016 Oct 11. doi: 10.1038/srep34991

PMCID:: PMC5057081

Abstract Article PDF–1.7M

Select item 48707328.

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database

Jeremy Pasquier, Cédric Cabau, Thaovi Nguyen, Elodie Jouanno, Dany Severac, Ingo Braasch, Laurent Journot, Pierre Pontarotti, Christophe Klopp, John H. Postlethwait, Yann Guiguen, Julien Bobe

BMC Genomics. 2016; 17: 368. Published online 2016 May 18. doi: 10.1186/s12864-016-2709-z

PMCID:: PMC4870732

Abstract Article PDF–1.8M

Select item 46341379.

RFX transcription factors are essential for hearing in mice

Ran Elkon, Beatrice Milon, Laura Morrison, Manan Shah, Sarath Vijayakumar, Manoj Racherla, Carmen C. Leitch, Lorna Silipino, Shadan Hadi, Michèle Weiss-Gayet, Emmanuèle Barras, Christoph D. Schmid, Aouatef Ait-Lounis, Ashley Barnes, Yang Song, David J. Eisenman, Efrat Eliyahu, Gregory I. Frolenkov, Scott E. Strome, Bénédicte Durand, Norann A. Zaghloul, Sherri M. Jones, Walter Reith, Ronna Hertzano

Nat Commun. 2015; 6: 8549. Published online 2015 Oct 15. doi: 10.1038/ncomms9549

PMCID:: PMC4634137

Abstract Article PDF–5.5M

Select item 420676610.

Global identification of Smad2 and Eomesodermin targets in zebrafish identifies a conserved transcriptional network in mesendoderm and a novel role for Eomesodermin in repression of ectodermal gene expression

Andrew C Nelson, Stephen J Cutty, Marie Niini, Derek L Stemple, Paul Flicek, Corinne Houart, Ashley EE Bruce, Fiona C Wardle

BMC Biol. 2014; 12: 81. Published online 2014 Oct 3. doi: 10.1186/s12915-014-0081-5

PMCID:: PMC4206766

Abstract Article PDF–3.7M

Select item 407430011.

BMP, Wnt and FGF signals are integrated through evolutionarily conserved enhancers to achieve robust expression of Pax3 and Zic genes at the zebrafish neural plate border

Aaron T. Garnett, Tyler A. Square, Daniel M. Medeiros

Development. 2012 Nov 15; 139(22): 4220–4231. doi: 10.1242/dev.081497

PMCID:: PMC4074300

Abstract Article

Select item 381431412.

Genome Wide Analysis Reveals Zic3 Interaction with Distal Regulatory Elements of Stage Specific Developmental Genes in Zebrafish

Cecilia L. Winata, Igor Kondrychyn, Vibhor Kumar, Kandhadayar G. Srinivasan, Yuriy Orlov, Ashwini Ravishankar, Shyam Prabhakar, Lawrence W. Stanton, Vladimir Korzh, Sinnakaruppan Mathavan

PLoS Genet. 2013 Oct; 9(10): e1003852. Published online 2013 Oct 31. doi: 10.1371/journal.pgen.1003852

PMCID:: PMC3814314

Abstract Article PDF–6.2M

Select item 375170013.

The role of Zic transcription factors in regulating hindbrain retinoic acid signaling

Danna L Drummond, Caroline S Cheng, Lyndsay G Selland, Jennifer C Hocking, Lisa B Prichard, Andrew J Waskiewicz

BMC Dev Biol. 2013; 13: 31. Published online 2013 Aug 12. doi: 10.1186/1471-213X-13-31

PMCID:: PMC3751700

Abstract Article PDF–7.0M

Select item 372644314.

Full Transcriptome Analysis of Early Dorsoventral Patterning in Zebrafish

Erika Fodor, Áron Zsigmond, Balázs Horváth, János Molnár, István Nagy, Gábor Tóth, Stephen W. Wilson, Máté Varga

PLoS One. 2013; 8(7): e70053. Published online 2013 Jul 29. doi: 10.1371/journal.pone.0070053

PMCID:: PMC3726443

Abstract Article PDF–11M

Select item 347267815.

Study of Pluripotency Markers in Zebrafish Embryos and Transient Embryonic Stem Cell Cultures

Vanesa Robles, Mercé Martí, Juan Carlos Izpisua Belmonte

Zebrafish. 2011 Jun; 8(2): 57–63. doi: 10.1089/zeb.2010.0684

PMCID:: PMC3472678

Abstract Article PDF–8.7M

Select item 346019816.

Dynamics of enhancer chromatin signatures mark the transition from pluripotency to cell specification during embryogenesis

Ozren Bogdanović, Ana Fernandez-Miñán, Juan J. Tena, Elisa de la Calle-Mustienes, Carmen Hidalgo, Ila van Kruysbergen, Simon J. van Heeringen, Gert Jan C. Veenstra, José Luis Gómez-Skarmeta

Genome Res. 2012 Oct; 22(10): 2043–2053. doi: 10.1101/gr.134833.111

PMCID:: PMC3460198

Abstract Article PDF–1.9M

Select item 329402417.

An essential and highly conserved role for Zic3 in left-right patterning, gastrulation and convergent extension morphogenesis

Ashley E. Cast, Chunlei Gao, Jeffrey D. Amack, Stephanie M. Ware

Dev Biol. Author manuscript; available in PMC 2013 Apr 1.

Published in final edited form as: Dev Biol. 2012 Apr 1; 364(1): 22–31. Published online 2012 Jan 21. doi: 10.1016/j.ydbio.2012.01.011

PMCID:: PMC3294024

Abstract Article PDF–3.0M

Select item 317805918.

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas

Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042

PMCID:: PMC3178059

Abstract Article PDF–1.0M

Select item 282631219.

Regeneration and reprogramming compared

Bea Christen, Vanesa Robles, Marina Raya, Ida Paramonov, Juan Carlos Izpisúa Belmonte

BMC Biol. 2010; 8: 5. Published online 2010 Jan 20. doi: 10.1186/1741-7007-8-5

PMCID:: PMC2826312

Abstract Article PDF–9.1M

Select item 119954620.

The zebrafish gene map defines ancestral vertebrate chromosomes

Ian G. Woods, Catherine Wilson, Brian Friedlander, Patricia Chang, Daengnoy K. Reyes, Rebecca Nix, Peter D. Kelly, Felicia Chu, John H. Postlethwait, William S. Talbot

Genome Res. 2005 Sep; 15(9): 1307–1314. doi: 10.1101/gr.4134305