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Items: 19

1.
Dual Proteome-scale Networks Reveal Cell-specific Remodeling of the Human Interactome
Edward L. Huttlin, Raphael J. Bruckner, Jose Navarrete-Perea, Joe R. Cannon, Kurt Baltier, Fana Gebreab, Melanie P. Gygi, Alexandra Thornock, Gabriela Zarraga, Stanley Tam, John Szpyt, Brandon M. Gassaway, Alexandra Panov, Hannah Parzen, Sipei Fu, Arvene Golbazi, Eila Maenpaa, Keegan Stricker, Sanjukta Guha Thakurta, Tian Zhang, Ramin Rad, Joshua Pan, David P. Nusinow, Joao A. Paulo, Devin K. Schweppe, Laura Pontano Vaites, J. Wade Harper, Steven P. Gygi
Cell. Author manuscript; available in PMC 2022 May 27.
Published in final edited form as: Cell. 2021 May 27; 184(11): 3022–3040.e28. Published online 2021 May 6. doi: 10.1016/j.cell.2021.04.011
PMCID:
PMC8165030
AbstractArticlePDF–2.2M
2.
Architecture of the human interactome defines protein communities and disease networks
Edward L. Huttlin, Raphael J. Bruckner, Joao A. Paulo, Joe R. Cannon, Lily Ting, Kurt Baltier, Greg Colby, Fana Gebreab, Melanie P. Gygi, Hannah Parzen, John Szpyt, Stanley Tam, Gabriela Zarraga, Laura Pontano-Vaites, Sharan Swarup, Anne E. White, Devin K. Schweppe, Ramin Rad, Brian K. Erickson, Robert A. Obar, K.G. Guruharsha, Kejie Li, Spyros Artavanis-Tsakonas, Steven P. Gygi, J. Wade Harper
Nature. Author manuscript; available in PMC 2017 Nov 17.
Published in final edited form as: Nature. 2017 May 25; 545(7655): 505–509. Published online 2017 May 17. doi: 10.1038/nature22366
PMCID:
PMC5531611
AbstractArticlePDF–2.7M
3.
Widespread expansion of protein interaction capabilities by alternative splicing
Xinping Yang, Jasmin Coulombe-Huntington, Shuli Kang, Gloria M. Sheynkman, Tong Hao, Aaron Richardson, Song Sun, Fan Yang, Yun A. Shen, Ryan R. Murray, Kerstin Spirohn, Bridget E. Begg, Miquel Duran-Frigola, Andrew MacWilliams, Samuel J. Pevzner, Quan Zhong, Shelly A. Wanamaker, Stanley Tam, Lila Ghamsari, Nidhi Sahni, Song Yi, Maria D. Rodriguez, Dawit Balcha, Guihong Tan, Michael Costanzo, Brenda Andrews, Charles Boone, Xianghong J. Zhou, Kourosh Salehi-Ashtiani, Benoit Charloteaux, Alyce A. Chen, Michael A. Calderwood, Patrick Aloy, Frederick P. Roth, David E. Hill, Lilia M. Iakoucheva, Yu Xia, Marc Vidal
Cell. Author manuscript; available in PMC 2017 Feb 11.
Published in final edited form as: Cell. 2016 Feb 11; 164(4): 805–817. doi: 10.1016/j.cell.2016.01.029
PMCID:
PMC4882190
AbstractArticlePDF–1.9M
4.
A deep proteomics perspective on CRM1-mediated nuclear export and nucleocytoplasmic partitioning
Koray Kırlı, Samir Karaca, Heinz Jürgen Dehne, Matthias Samwer, Kuan Ting Pan, Christof Lenz, Henning Urlaub, Dirk Görlich
eLife. 2015; 4: e11466. Published online 2015 Dec 17. doi: 10.7554/eLife.11466
PMCID:
PMC4764573
AbstractArticlePDF–5.7M
5.
Peptidic degron in EID1 is recognized by an SCF E3 ligase complex containing the orphan F-box protein FBXO21
Cuiyan Zhang, Xiaotong Li, Guillaume Adelmant, Jessica Dobbins, Christoph Geisen, Matthew G. Oser, Kai W. Wucherpfenning, Jarrod A. Marto, William G. Kaelin, Jr.
Proc Natl Acad Sci U S A. 2015 Dec 15; 112(50): 15372–15377. Published online 2015 Dec 2. doi: 10.1073/pnas.1522006112
PMCID:
PMC4687553
AbstractArticlePDF–1.4M
6.
Protein interaction network of alternatively spliced isoforms from brain links genetic risk factors for autism
Roser Corominas, Xinping Yang, Guan Ning Lin, Shuli Kang, Yun Shen, Lila Ghamsari, Martin Broly, Maria Rodriguez, Stanley Tam, Shelly A. Wanamaker, Changyu Fan, Song Yi, Murat Tasan, Irma Lemmens, Xingyan Kuang, Nan Zhao, Dheeraj Malhotra, Jacob J. Michaelson, Vladimir Vacic, Michael A. Calderwood, Frederick P. Roth, Jan Tavernier, Steve Horvath, Kourosh Salehi-Ashtiani, Dmitry Korkin, Jonathan Sebat, David E. Hill, Tong Hao, Marc Vidal, Lilia M. Iakoucheva
Nat Commun. 2014; 5: 3650. Published online 2014 Apr 11. doi: 10.1038/ncomms4650
Correction in:
Nat Commun. 2023; 14: 569.
PMCID:
PMC3996537
AbstractArticlePDF–1.9M
7.
Structural insights into gene repression by the orphan nuclear receptor SHP
Xiaoyong Zhi, X. Edward Zhou, Yuanzheng He, Christoph Zechner, Kelly M. Suino-Powell, Steven A. Kliewer, Karsten Melcher, David J. Mangelsdorf, H. Eric Xu
Proc Natl Acad Sci U S A. 2014 Jan 14; 111(2): 839–844. Published online 2013 Dec 30. doi: 10.1073/pnas.1322827111
Correction in:
Proc Natl Acad Sci U S A. 2014 Mar 11; 111(10): 3895.
PMCID:
PMC3896210
AbstractArticlePDF–1022K
8.
Increased EID1 Nuclear Translocation Impairs Synaptic Plasticity and Memory Function Associated with Pathogenesis of Alzheimer’s disease
Rugao Liu, Joy X Lei, Chun Luo, Xun Lan, Liying Chi, Panyue Deng, Saobo Lei, Othman Ghribi, Qing Yan Liu
Neurobiol Dis. Author manuscript; available in PMC 2013 Mar 1.
Published in final edited form as: Neurobiol Dis. 2012 Mar; 45(3): 902–912. Published online 2011 Dec 11. doi: 10.1016/j.nbd.2011.12.007
PMCID:
PMC3276739
AbstractArticlePDF–4.6M
9.
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas
Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042
PMCID:
PMC3178059
AbstractArticlePDF–1.0M
10.
Protein interactome reveals converging molecular pathways among autism disorders
Yasunari Sakai, Chad A. Shaw, Brian C. Dawson, Diana V. Dugas, Zaina Al-Mohtaseb, David E. Hill, Huda Y. Zoghbi
Sci Transl Med. Author manuscript; available in PMC 2011 Dec 8.
Published in final edited form as: Sci Transl Med. 2011 Jun 8; 3(86): 86ra49. doi: 10.1126/scitranslmed.3002166
PMCID:
PMC3169432
AbstractArticlePDF–6.0M
11.
Interactions between the Nse3 and Nse4 Components of the SMC5-6 Complex Identify Evolutionarily Conserved Interactions between MAGE and EID Families
Jessica J. R. Hudson, Katerina Bednarova, Lucie Kozakova, Chunyan Liao, Marc Guerineau, Rita Colnaghi, Susanne Vidot, Jaromir Marek, Sreenivas R. Bathula, Alan R. Lehmann, Jan Palecek
PLoS One. 2011; 6(2): e17270. Published online 2011 Feb 25. doi: 10.1371/journal.pone.0017270
PMCID:
PMC3045436
AbstractArticlePDF–1.7M
12.
Interactome mapping suggests new mechanistic details underlying Alzheimer's disease
Montserrat Soler-López, Andreas Zanzoni, Ricart Lluís, Ulrich Stelzl, Patrick Aloy
Genome Res. 2011 Mar; 21(3): 364–376. doi: 10.1101/gr.114280.110
PMCID:
PMC3044851
AbstractArticlePDF–2.1M
13.
Novel Polymorphisms of Nuclear Receptor SHP Associated with Functional and Structural Changes
Taofeng Zhou, Yuxia Zhang, Antonio Macchiarulo, Zhihong Yang, Marco Cellanetti, Eliecer Coto, Pingyi Xu, Roberto Pellicciari, Li Wang
J Biol Chem. 2010 Aug 6; 285(32): 24871–24881. Published online 2010 Jun 1. doi: 10.1074/jbc.M110.133280
PMCID:
PMC2915723
AbstractArticlePDF–2.4M
14.
EID3 is a novel EID family member and an inhibitor of CBP-dependent co-activation
Ann Båvner, Jason Matthews, Sabyasachi Sanyal, Jan-Åke Gustafsson, Eckardt Treuter
Nucleic Acids Res. 2005; 33(11): 3561–3569. Published online 2005 Jun 24. doi: 10.1093/nar/gki667
PMCID:
PMC1159117
AbstractArticlePDF–390K
15.
A transcriptional inhibitor targeted by the atypical orphan nuclear receptor SHP
Ann Båvner, Lotta Johansson, Gudrun Toresson, Jan-Åke Gustafsson, Eckardt Treuter
EMBO Rep. 2002 May 15; 3(5): 478–484. doi: 10.1093/embo-reports/kvf087
PMCID:
PMC1084100
AbstractArticlePDF–569K
16.
Acetylation regulates the differentiation-specific functions of the retinoblastoma protein
Don X Nguyen, Laurel A Baglia, Shih-Min Huang, Christina M Baker, Dennis J McCance
EMBO J. 2004 Apr 7; 23(7): 1609–1618. Published online 2004 Mar 25. doi: 10.1038/sj.emboj.7600176
PMCID:
PMC391080
AbstractArticlePDF–279K
17.
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences
Mammalian Gene Collection (MGC) Program Team
Proc Natl Acad Sci U S A. 2002 Dec 24; 99(26): 16899–16903. Published online 2002 Dec 11. doi: 10.1073/pnas.242603899
PMCID:
PMC139241
AbstractArticlePDF–118K
18.
A Novel Rb- and p300-Binding Protein Inhibits Transactivation by MyoD
W. Robb MacLellan, G. Xiao, M. Abdellatif, Michael D. Schneider
Mol Cell Biol. 2000 Dec; 20(23): 8903–8915. doi: 10.1128/mcb.20.23.8903-8915.2000
PMCID:
PMC86545
AbstractArticlePDF–1.5M
19.
Cells Degrade a Novel Inhibitor of Differentiation with E1A-Like Properties upon Exiting the Cell Cycle
Satoshi Miyake, William R. Sellers, Michal Safran, Xiaotong Li, Wenqing Zhao, Steven R. Grossman, Jianmin Gan, James A. DeCaprio, Peter D. Adams, William G. Kaelin, Jr.
Mol Cell Biol. 2000 Dec; 20(23): 8889–8902. doi: 10.1128/mcb.20.23.8889-8902.2000
PMCID:
PMC86544
AbstractArticlePDF–1.6M

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