PMC Links for GEO Profiles (Select 122614389) - PMC

Reza Pourhaghighi, Peter E. A. Ash, Sadhna Phanse, Florian Goebels, Lucas Z. M. Hu, Siwei Chen, Yingying Zhang, Shayne D. Wierbowski, Samantha Boudeau, Mohamed T. Moutaoufik, Ramy H. Malty, Edyta Malolepsza, Kalliopi Tsafou, Aparna Nathan, Graham Cromar, Hongbo Guo, Ali Al Abdullatif, Daniel J. Apicco, Lindsay A. Becker, Aaron D. Gitler, Stefan M. Pulst, Ahmed Youssef, Ryan Hekman, Pierre C. Havugimana, Carl A. White, Benjamin C. Blum, Antonia Ratti, Camron D. Bryant, John Parkinson, Kasper Lage, Mohan Babu, Haiyuan Yu, Gary D. Bader, Benjamin Wolozin, Andrew Emili

Cell Syst. Author manuscript; available in PMC 2021 Apr 22.

Published in final edited form as: Cell Syst. 2020 Apr 22; 10(4): 333–350.e14. doi: 10.1016/j.cels.2020.03.003

Correction in:: Cell Syst. 2020 Aug 26; 11(2): 208.

PMCID:: PMC7938770

Abstract Article PDF–2.0M

Select item 58777834.

Nbeal2 interacts with Dock7, Sec16a, and Vac14

Louisa Mayer, Maria Jasztal, Mercedes Pardo, Salvadora Aguera de Haro, Janine Collins, Tadbir K. Bariana, Peter A. Smethurst, Luigi Grassi, Romina Petersen, Paquita Nurden, Rémi Favier, Lu Yu, Stuart Meacham, William J. Astle, Jyoti Choudhary, Wyatt W. Yue, Willem H. Ouwehand, Jose A. Guerrero

Blood. 2018 Mar 1; 131(9): 1000–1011. Prepublished online 2017 Nov 29. doi: 10.1182/blood-2017-08-800359

PMCID:: PMC5877783

Abstract Article

Select item 48893285.

PI(3,5)P₂ biosynthesis regulates oligodendrocyte differentiation by intrinsic and extrinsic mechanisms

Yevgeniya A Mironova, Guy M Lenk, Jing-Ping Lin, Seung Joon Lee, Jeffery L Twiss, Ilaria Vaccari, Alessandra Bolino, Leif A Havton, Sang H Min, Charles S Abrams, Peter Shrager, Miriam H Meisler, Roman J Giger

eLife. 2016; 5: e13023. Published online 2016 Mar 23. doi: 10.7554/eLife.13023

PMCID:: PMC4889328

Abstract Article PDF–6.1M

Select item 48713186.

A Molecular Mechanism to Regulate Lysosome Motility for Lysosome Positioning and Tubulation

Xinran Li, Nicholas Rydzewski, Ahmad Hider, Xiaoli Zhang, Junsheng Yang, Wuyang Wang, Qiong Gao, Xiping Cheng, Haoxing Xu

Nat Cell Biol. Author manuscript; available in PMC 2016 Sep 7.

Published in final edited form as: Nat Cell Biol. 2016 Apr; 18(4): 404–417. Published online 2016 Mar 7. doi: 10.1038/ncb3324

PMCID:: PMC4871318

Abstract Article PDF–4.7M

Select item 47879037.

The ubiquitin ligase Ubr4 controls stability of podocin/MEC-2 supercomplexes

Markus M. Rinschen, Puneet Bharill, Xiongwu Wu, Priyanka Kohli, Matthäus J. Reinert, Oliver Kretz, Isabel Saez, Bernhard Schermer, Martin Höhne, Malte P. Bartram, Sriram Aravamudhan, Bernard R. Brooks, David Vilchez, Tobias B. Huber, Roman-Ulrich Müller, Marcus Krüger, Thomas Benzing

Hum Mol Genet. 2016 Apr 1; 25(7): 1328–1344. Published online 2016 Jan 19. doi: 10.1093/hmg/ddw016

PMCID:: PMC4787903

Abstract Article PDF–1.0M

Select item 46861368.

Systematic Identification of Factors for Provirus Silencing in Embryonic Stem Cells

Bin Xia Yang, Chadi A. EL Farran, Hong Chao Guo, Tao Yu, Hai Tong Fang, Hao Fei Wang, Sharon Schlesinger, Yu Fen Samantha Seah, Germaine Yen Lin Goh, Suat Peng Neo, Yinghui Li, Matthew C. Lorincz, Vinay Tergaonkar, Tit-Meng Lim, Lingyi Chen, Jayantha Gunaratne, James J. Collins, Stephen P. Goff, George Q. Daley, Hu Li, Frederic A. Bard, Yuin-Han Loh

Cell. Author manuscript; available in PMC 2015 Dec 21.

Published in final edited form as: Cell. 2015 Sep 24; 163(1): 230–245. Published online 2015 Sep 10. doi: 10.1016/j.cell.2015.08.037

PMCID:: PMC4686136

Abstract Article PDF–1.2M

Select item 42525599.

Upregulation of Parkin in Endophilin Mutant Mice

Mian Cao, Ira Milosevic, Silvia Giovedi, Pietro De Camilli

J Neurosci. 2014 Dec 3; 34(49): 16544–16549. doi: 10.1523/JNEUROSCI.1710-14.2014

PMCID:: PMC4252559

Abstract Article PDF–954K

Select item 349150610.

In vivo, Pikfyve generates PI(3,5)P₂, which serves as both a signaling lipid and the major precursor for PI5P

Sergey N. Zolov, Dave Bridges, Yanling Zhang, Wei-Wei Lee, Ellen Riehle, Rakesh Verma, Guy M. Lenk, Kimber Converso-Baran, Thomas Weide, Roger L. Albin, Alan R. Saltiel, Miriam H. Meisler, Mark W. Russell, Lois S. Weisman

Proc Natl Acad Sci U S A. 2012 Oct 23; 109(43): 17472–17477. Published online 2012 Oct 9. doi: 10.1073/pnas.1203106109

PMCID:: PMC3491506

Abstract Article PDF–1.0M

Select item 341993211.

Modulation of synaptic function by VAC14, a protein that regulates the phosphoinositides PI(3,5)P₂ and PI(5)P

Yanling Zhang, Amber J McCartney, Sergey N Zolov, Cole J Ferguson, Miriam H Meisler, Michael A Sutton, Lois S Weisman

EMBO J. 2012 Aug 15; 31(16): 3442–3456. Published online 2012 Jul 27. doi: 10.1038/emboj.2012.200

PMCID:: PMC3419932

Abstract Article PDF–2.1M

Select item 340842112.

Phosphatidylinositol 3,5-bisphosphate plays a role in the activation and subcellular localization of mechanistic target of rapamycin 1

Dave Bridges, Jing-Tyan Ma, Sujin Park, Ken Inoki, Lois S. Weisman, Alan R. Saltiel

Mol Biol Cell. 2012 Aug 1; 23(15): 2955–2962. doi: 10.1091/mbc.E11-12-1034

PMCID:: PMC3408421

Abstract Article PDF–4.0M

Select item 317805913.

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas

Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042

PMCID:: PMC3178059

Abstract Article PDF–1.0M

Select item 310719714.

Pathogenic Mechanism of the FIG4 Mutation Responsible for Charcot-Marie-Tooth Disease CMT4J

Guy M. Lenk, Cole J. Ferguson, Clement Y. Chow, Natsuko Jin, Julie M. Jones, Adrienne E. Grant, Sergey N. Zolov, Jesse J. Winters, Roman J. Giger, James J. Dowling, Lois S. Weisman, Miriam H. Meisler

PLoS Genet. 2011 Jun; 7(6): e1002104. Published online 2011 Jun 2. doi: 10.1371/journal.pgen.1002104

PMCID:: PMC3107197

Abstract Article PDF–2.6M

Select item 302253415.

A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo

Graciana Diez-Roux, Sandro Banfi, Marc Sultan, Lars Geffers, Santosh Anand, David Rozado, Alon Magen, Elena Canidio, Massimiliano Pagani, Ivana Peluso, Nathalie Lin-Marq, Muriel Koch, Marchesa Bilio, Immacolata Cantiello, Roberta Verde, Cristian De Masi, Salvatore A. Bianchi, Juliette Cicchini, Elodie Perroud, Shprese Mehmeti, Emilie Dagand, Sabine Schrinner, Asja Nürnberger, Katja Schmidt, Katja Metz, Christina Zwingmann, Norbert Brieske, Cindy Springer, Ana Martinez Hernandez, Sarah Herzog, Frauke Grabbe, Cornelia Sieverding, Barbara Fischer, Kathrin Schrader, Maren Brockmeyer, Sarah Dettmer, Christin Helbig, Violaine Alunni, Marie-Annick Battaini, Carole Mura, Charlotte N. Henrichsen, Raquel Garcia-Lopez, Diego Echevarria, Eduardo Puelles, Elena Garcia-Calero, Stefan Kruse, Markus Uhr, Christine Kauck, Guangjie Feng, Nestor Milyaev, Chuang Kee Ong, Lalit Kumar, MeiSze Lam, Colin A. Semple, Attila Gyenesei, Stefan Mundlos, Uwe Radelof, Hans Lehrach, Paolo Sarmientos, Alexandre Reymond, Duncan R. Davidson, Pascal Dollé, Stylianos E. Antonarakis, Marie-Laure Yaspo, Salvador Martinez, Richard A. Baldock, Gregor Eichele, Andrea Ballabio

PLoS Biol. 2011 Jan; 9(1): e1000582. Published online 2011 Jan 18. doi: 10.1371/journal.pbio.1000582

PMCID:: PMC3022534

Abstract Article PDF–3.8M

Select item 293067416.

ArPIKfyve Regulates Sac3 Protein Abundance and Turnover: DISRUPTION OF THE MECHANISM BY Sac3^I41T MUTATION CAUSING CHARCOT-MARIE-TOOTH 4J DISORDER

Ognian C. Ikonomov, Diego Sbrissa, Jason Fligger, Khortnal Delvecchio, Assia Shisheva

J Biol Chem. 2010 Aug 27; 285(35): 26760–26764. Published online 2010 Jul 14. doi: 10.1074/jbc.C110.154658

PMCID:: PMC2930674

Abstract Article PDF–1.3M

Select item 277837817.

Defective autophagy in neurons and astrocytes from mice deficient in PI(3,5)P₂

Cole J. Ferguson, Guy M. Lenk, Miriam H. Meisler

Hum Mol Genet. 2009 Dec 15; 18(24): 4868–4878. Published online 2009 Sep 29. doi: 10.1093/hmg/ddp460

PMCID:: PMC2778378

Abstract Article PDF–569K

Select item 260065318.

VAC14 nucleates a protein complex essential for the acute interconversion of PI3P and PI(3,5)P₂ in yeast and mouse

Natsuko Jin, Clement Y Chow, Li Liu, Sergey N Zolov, Roderick Bronson, Muriel Davisson, Jason L Petersen, Yanling Zhang, Sujin Park, Jason E Duex, Daniel Goldowitz, Miriam H Meisler, Lois S Weisman

EMBO J. 2008 Dec 17; 27(24): 3221–3234. Published online 2008 Nov 27. doi: 10.1038/emboj.2008.248

PMCID:: PMC2600653

Abstract Article PDF–1.4M

Select item 247567919.

ArPIKfyve-PIKfyve interaction and role in insulin-regulated GLUT4 translocation and glucose transport in 3T3-L1 adipocytes

Ognian C. Ikonomov, Diego Sbrissa, Rajeswari Dondapati, Assia Shisheva

Exp Cell Res. Author manuscript; available in PMC 2008 Jul 21.

Published in final edited form as: Exp Cell Res. 2007 Jul 1; 313(11): 2404–2416. Published online 2007 Mar 30. doi: 10.1016/j.yexcr.2007.03.024

PMCID:: PMC2475679

Abstract Article PDF–1.3M

Select item 217345420.

Osmotic stress–induced increase of phosphatidylinositol 3,5-bisphosphate requires Vac14p, an activator of the lipid kinase Fab1p

Cecilia J. Bonangelino, Johnathan J. Nau, Jason E. Duex, Mikala Brinkman, Andrew E. Wurmser, Jonathan D. Gary, Scott D. Emr, Lois S. Weisman

J Cell Biol. 2002 Mar 18; 156(6): 1015–1028. doi: 10.1083/jcb.200201002

PMCID:: PMC2173454

Abstract Article PDF–450K

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