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Items: 20

1.
MacroH2A restricts inflammatory gene expression in melanoma cancer-associated fibroblasts by coordinating chromatin looping
Dan Filipescu, Saul Carcamo, Aman Agarwal, Navpreet Tung, Étienne Humblin, Matthew S. Goldberg, Nikki S. Vyas, Kristin G. Beaumont, Deniz Demircioglu, Subhasree Sridhar, Flavia G. Ghiraldini, Claudia Capparelli, Andrew E. Aplin, Hélène Salmon, Robert Sebra, Alice O. Kamphorst, Miriam Merad, Dan Hasson, Emily Bernstein
Nat Cell Biol. 2023; 25(9): 1332–1345. Published online 2023 Aug 21. doi: 10.1038/s41556-023-01208-7
PMCID:
PMC10495263
AbstractArticlePDF–21M
2.
Cell-Type-Specific Gene Expression in Developing Mouse Neocortex: Intermediate Progenitors Implicated in Axon Development
Francesco Bedogni, Robert F. Hevner
Front Mol Neurosci. 2021; 14: 686034. Published online 2021 Jul 12. doi: 10.3389/fnmol.2021.686034
PMCID:
PMC8313239
AbstractArticlePDF–1.6M
3.
MacroH2A1.2 deficiency leads to neural stem cell differentiation defects and autism‐like behaviors
Hongyan Ma, Libo Su, Wenlong Xia, Wenwen Wang, Guohe Tan, Jianwei Jiao
EMBO Rep. 2021 Jul 5; 22(7): e52150. Published online 2021 May 27. doi: 10.15252/embr.202052150
PMCID:
PMC8256304
AbstractArticlePDF–7.8M
4.
LSH mediates gene repression through macroH2A deposition
Kai Ni, Jianke Ren, Xiaoping Xu, Yafeng He, Richard Finney, Simon M. G. Braun, Nathaniel A. Hathaway, Gerald R. Crabtree, Kathrin Muegge
Nat Commun. 2020; 11: 5647. Published online 2020 Nov 6. doi: 10.1038/s41467-020-19159-0
PMCID:
PMC7648012
AbstractArticlePDF–2.8M
5.
Hdac4 Interactions in Huntington's Disease Viewed Through the Prism of Multiomics
Joel D. Federspiel, Todd M. Greco, Krystal K. Lum, Ileana M. Cristea
Mol Cell Proteomics. 2019 Aug 9; 18(8 Suppl 1): S92–S113. Published online 2019 Apr 30. doi: 10.1074/mcp.RA118.001253
PMCID:
PMC6692770
AbstractArticlePDF–7.7M
6.
ZFR coordinates crosstalk between RNA decay and transcription in innate immunity
Nazmul Haque, Ryota Ouda, Chao Chen, Keiko Ozato, J. Robert Hogg
Nat Commun. 2018; 9: 1145. Published online 2018 Mar 20. doi: 10.1038/s41467-018-03326-5
PMCID:
PMC5861047
AbstractArticlePDF–1.6M
7.
The histone variant macroH2A confers functional robustness to the intestinal stem cell compartment
Ryan James Cedeno, Angela Nakauka-Ddamba, Maryam Yousefi, Stephanie Sterling, Nicolae Adrian Leu, Ning Li, John R. Pehrson, Christopher Joachim Lengner
PLoS One. 2017; 12(9): e0185196. Published online 2017 Sep 21. doi: 10.1371/journal.pone.0185196
PMCID:
PMC5608326
AbstractArticlePDF–15M
8.
Nucleosome adaptability conferred by sequence and structural variations in histone H2A-H2B dimers
Alexey K. Shaytan, David Landsman, Anna R. Panchenko
Curr Opin Struct Biol. Author manuscript; available in PMC 2016 Jun 1.
Published in final edited form as: Curr Opin Struct Biol. 2015 Jun; 32: 48–57. Published online 2015 Feb 27. doi: 10.1016/j.sbi.2015.02.004
PMCID:
PMC4512853
AbstractArticlePDF–1.3M
9.
Mice without MacroH2A Histone Variants
John R. Pehrson, Lakshmi N. Changolkar, Carl Costanzi, N. Adrian Leu
Mol Cell Biol. 2014 Dec; 34(24): 4523–4533. doi: 10.1128/MCB.00794-14
PMCID:
PMC4248737
AbstractArticlePDF–1.1M
10.
A System for Genome-Wide Histone Variant Dynamics In ES Cells Reveals Dynamic MacroH2A2 Replacement at Promoters
Ozlem Yildirim, Jui-Hung Hung, Ryan J. Cedeno, Zhiping Weng, Christopher J. Lengner, Oliver J. Rando
PLoS Genet. 2014 Aug; 10(8): e1004515. Published online 2014 Aug 7. doi: 10.1371/journal.pgen.1004515
PMCID:
PMC4125097
AbstractArticlePDF–2.6M
11.
MacroH2A histone variants act as a barrier upon reprogramming towards pluripotency
Alexandre Gaspar-Maia, Zulekha A. Qadeer, Dan Hasson, Kajan Ratnakumar, N. Adrian Leu, Gary Leroy, Shichong Liu, Carl Costanzi, David Valle-Garcia, Christoph Schaniel, Ihor Lemischka, Benjamin Garcia, John R. Pehrson, Emily Bernstein
Nat Commun. Author manuscript; available in PMC 2014 Jun 12.
Published in final edited form as: Nat Commun. 2013; 4: 1565. doi: 10.1038/ncomms2582
Correction in:
Nat Commun, volume 4 on page 2090
PMCID:
PMC4055026
AbstractArticlePDF–793K
12.
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas
Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042
PMCID:
PMC3178059
AbstractArticlePDF–1.0M
13.
X Chromosome Inactivation and Differentiation Occur Readily in ES Cells Doubly-Deficient for MacroH2A1 and MacroH2A2
Borko Tanasijevic, Theodore P. Rasmussen
PLoS One. 2011; 6(6): e21512. Published online 2011 Jun 30. doi: 10.1371/journal.pone.0021512
PMCID:
PMC3127949
AbstractArticlePDF–1.6M
14.
Large-scale gene trapping in C57BL/6N mouse embryonic stem cells
Gwenn M. Hansen, Diane C. Markesich, Michael B. Burnett, Qichao Zhu, Karen M. Dionne, Lizabeth J. Richter, Richard H. Finnell, Arthur T. Sands, Brian P. Zambrowicz, Alejandro Abuin
Genome Res. 2008 Oct; 18(10): 1670–1679. doi: 10.1101/gr.078352.108
PMCID:
PMC2556270
AbstractArticlePDF–493K
15.
The Status, Quality, and Expansion of the NIH Full-Length cDNA Project: The Mammalian Gene Collection (MGC)
Genome Res. 2004 Oct; 14(10b): 2121–2127. doi: 10.1101/gr.2596504
Correction in:
Genome Res. 2006 Jun; 16(6): 804.
PMCID:
PMC528928
AbstractArticlePDF–140K
16.
RIKEN Integrated Sequence Analysis (RISA) System—384-Format Sequencing Pipeline with 384 Multicapillary Sequencer
Kazuhiro Shibata, Masayoshi Itoh, Katsunori Aizawa, Sumiharu Nagaoka, Nobuya Sasaki, Piero Carninci, Hideaki Konno, Junichi Akiyama, Katsuo Nishi, Tokuji Kitsunai, Hideo Tashiro, Mari Itoh, Noriko Sumi, Yoshiyuki Ishii, Shin Nakamura, Makoto Hazama, Tsutomu Nishine, Akira Harada, Rintaro Yamamoto, Hiroyuki Matsumoto, Sumito Sakaguchi, Takashi Ikegami, Katsuya Kashiwagi, Syuji Fujiwake, Kouji Inoue, Yoshiyuki Togawa, Masaki Izawa, Eiji Ohara, Masanori Watahiki, Yuko Yoneda, Tomokazu Ishikawa, Kaori Ozawa, Takumi Tanaka, Shuji Matsuura, Jun Kawai, Yasushi Okazaki, Masami Muramatsu, Yorinao Inoue, Akira Kira, Yoshihide Hayashizaki
Genome Res. 2000 Nov; 10(11): 1757–1771. doi: 10.1101/gr.152600
PMCID:
PMC310992
AbstractArticlePDF–3.4M
17.
Normalization and Subtraction of Cap-Trapper-Selected cDNAs to Prepare Full-Length cDNA Libraries for Rapid Discovery of New Genes
Piero Carninci, Yuko Shibata, Norihito Hayatsu, Yuichi Sugahara, Kazuhiro Shibata, Masayoshi Itoh, Hideaki Konno, Yasushi Okazaki, Masami Muramatsu, Yoshihide Hayashizaki
Genome Res. 2000 Oct; 10(10): 1617–1630. doi: 10.1101/gr.145100
PMCID:
PMC310980
AbstractArticlePDF–1.4M
18.
Wnk1 kinase deficiency lowers blood pressure in mice: A gene-trap screen to identify potential targets for therapeutic intervention
Brian P. Zambrowicz, Alejandro Abuin, Ramiro Ramirez-Solis, Lizabeth J. Richter, James Piggott, Hector BeltrandelRio, Eric C. Buxton, Joel Edwards, Rick A. Finch, Carl J. Friddle, Anupma Gupta, Gwenn Hansen, Yi Hu, Wenhu Huang, Crystal Jaing, Billie Wayne Key, Jr., Peter Kipp, Buckley Kohlhauff, Zhi-Qing Ma, Diane Markesich, Robert Payne, David G. Potter, Ny Qian, Joseph Shaw, Jeff Schrick, Zheng-Zheng Shi, Mary Jean Sparks, Isaac Van Sligtenhorst, Peter Vogel, Wade Walke, Nianhua Xu, Qichao Zhu, Christophe Person, Arthur T. Sands
Proc Natl Acad Sci U S A. 2003 Nov 25; 100(24): 14109–14114. Published online 2003 Nov 10. doi: 10.1073/pnas.2336103100
Correction in:
Proc Natl Acad Sci U S A. 2004 Mar 23; 101(12): 4332.
PMCID:
PMC283554
AbstractArticlePDF–481K
19.
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences
Mammalian Gene Collection (MGC) Program Team
Proc Natl Acad Sci U S A. 2002 Dec 24; 99(26): 16899–16903. Published online 2002 Dec 11. doi: 10.1073/pnas.242603899
PMCID:
PMC139241
AbstractArticlePDF–118K
20.
Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray
Tetsuya S. Tanaka, Saied A. Jaradat, Meng K. Lim, George J. Kargul, Xiaohong Wang, Marija J. Grahovac, Serafino Pantano, Yuri Sano, Yulan Piao, Ramaiah Nagaraja, Hirofumi Doi, William H. Wood, III, Kevin G. Becker, Minoru S. H. Ko
Proc Natl Acad Sci U S A. 2000 Aug 1; 97(16): 9127–9132. doi: 10.1073/pnas.97.16.9127
PMCID:
PMC16833
AbstractArticlePDF–847K

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