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Items: 19

1.
USP16-mediated histone H2A lysine-119 deubiquitination during oocyte maturation is a prerequisite for zygotic genome activation
Yan Rong, Ye-Zhang Zhu, Jia-li Yu, Yun-Wen Wu, Shu-Yan Ji, Yong Zhou, Yu Jiang, Jin Jin, Heng-Yu Fan, Li Shen, Qian-Qian Sha
Nucleic Acids Res. 2022 Jun 10; 50(10): 5599–5616. Published online 2022 May 30. doi: 10.1093/nar/gkac468
PMCID:
PMC9178006
AbstractArticlePDF–6.6M
2.
Proximity-dependent biotin identification (BioID) reveals a dynamic LSD1–CoREST interactome during embryonic stem cell differentiation
Claire E. Barnes, David M. English, Megan Broderick, Mark O. Collins, Shaun M. Cowley
Mol Omics. 2022 Jan 17; 18(1): 31–44. Published online 2021 Oct 14. doi: 10.1039/d1mo00236h
PMCID:
PMC8763317
AbstractArticle
3.
Zscan4c activates endogenous retrovirus MERVL and cleavage embryo genes
Weiyu Zhang, Fuquan Chen, Ruiqing Chen, Dan Xie, Jiao Yang, Xin Zhao, Renpeng Guo, Yongwang Zhang, Yang Shen, Jonathan Göke, Lin Liu, Xinyi Lu
Nucleic Acids Res. 2019 Sep 19; 47(16): 8485–8501. Published online 2019 Jul 15. doi: 10.1093/nar/gkz594
PMCID:
PMC7145578
AbstractArticlePDF–4.1M
4.
Characterization of zygotic genome activation-dependent maternal mRNA clearance in mouse
Qian-Qian Sha, Ye-Zhang Zhu, Sen Li, Yu Jiang, Lu Chen, Xiao-Hong Sun, Li Shen, Xiang-Hong Ou, Heng-Yu Fan
Nucleic Acids Res. 2020 Jan 24; 48(2): 879–894. Published online 2019 Nov 28. doi: 10.1093/nar/gkz1111
PMCID:
PMC6954448
AbstractArticlePDF–5.5M
5.
SMCHD1 terminates the first embryonic genome activation event in mouse two-cell embryos and contributes to a transcriptionally repressive state
Meghan L. Ruebel, Kailey A. Vincent, Peter Z. Schall, Kai Wang, Keith E. Latham
Am J Physiol Cell Physiol. 2019 Oct 1; 317(4): C655–C664. Published online 2019 Jul 31. doi: 10.1152/ajpcell.00116.2019
PMCID:
PMC6850993
AbstractArticle
6.
Nr0b1 is a negative regulator of Zscan4c in mouse embryonic stem cells
Setsuko Fujii, Satomi Nishikawa-Torikai, Yoko Futatsugi, Yayoi Toyooka, Mariko Yamane, Satoshi Ohtsuka, Hitoshi Niwa
Sci Rep. 2015; 5: 9146. Published online 2015 Mar 16. doi: 10.1038/srep09146
PMCID:
PMC5390923
AbstractArticlePDF–2.6M
7.
Expression analysis of the endogenous Zscan4 locus and its coding proteins in mouse ES cells and preimplantation embryos
Kei-ichiro Ishiguro, Yuhki Nakatake, Nana Chikazawa-Nohtomi, Hiromi Kimura, Tomohiko Akiyama, Mayumi Oda, Shigeru B.H. Ko, Minoru S.H. Ko
In Vitro Cell Dev Biol Anim. 2017; 53(2): 179–190. Published online 2016 Oct 3. doi: 10.1007/s11626-016-0097-y
PMCID:
PMC5311086
AbstractArticlePDF–1.4M
8.
MERVL/Zscan4 Network Activation Results in Transient Genome-wide DNA Demethylation of mESCs
Mélanie A. Eckersley-Maslin, Valentine Svensson, Christel Krueger, Thomas M. Stubbs, Pascal Giehr, Felix Krueger, Ricardo J. Miragaia, Charalampos Kyriakopoulos, Rebecca V. Berrens, Inês Milagre, Jörn Walter, Sarah A. Teichmann, Wolf Reik
Cell Rep. 2016 Sep 27; 17(1): 179–192. Published online 2016 Sep 27. doi: 10.1016/j.celrep.2016.08.087
PMCID:
PMC5055476
AbstractArticlePDF–4.3M
9.
Zscan4 Is Activated after Telomere Shortening in Mouse Embryonic Stem Cells
Yoko Nakai-Futatsugi, Hitoshi Niwa
Stem Cell Reports. 2016 Apr 12; 6(4): 483–495. Published online 2016 Mar 17. doi: 10.1016/j.stemcr.2016.02.010
PMCID:
PMC4834046
AbstractArticlePDF–3.1M
10.
Rif1 Maintains Telomere Length Homeostasis of ESCs by Mediating Heterochromatin Silencing
Jiameng Dan, Yifei Liu, Na Liu, Maria Chiourea, Maja Okuka, Tao Wu, Xiaoying Ye, Chunlin Mou, Lei Wang, Lingling Wang, Yu Yin, Jihong Yuan, Bingfeng Zuo, Fang Wang, Zhiguo Li, Xinghua Pan, Zhinan Yin, Lingyi Chen, David L. Keefe, Sarantis Gagos, Andrew Xiao, Lin Liu
Dev Cell. Author manuscript; available in PMC 2016 Jan 20.
Published in final edited form as: Dev Cell. 2014 Apr 14; 29(1): 7–19. doi: 10.1016/j.devcel.2014.03.004
PMCID:
PMC4720134
AbstractArticlePDF–927K
11.
Transient bursts of Zscan4 expression are accompanied by the rapid derepression of heterochromatin in mouse embryonic stem cells
Tomohiko Akiyama, Li Xin, Mayumi Oda, Alexei A. Sharov, Misa Amano, Yulan Piao, J. Scotty Cadet, Dawood B. Dudekula, Yong Qian, Weidong Wang, Shigeru B. H. Ko, Minoru S. H. Ko
DNA Res. 2015 Oct; 22(5): 307–318. Published online 2015 Aug 31. doi: 10.1093/dnares/dsv013
PMCID:
PMC4596397
AbstractArticlePDF–1.0M
12.
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas
Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042
PMCID:
PMC3178059
AbstractArticlePDF–1.0M
13.
A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo
Graciana Diez-Roux, Sandro Banfi, Marc Sultan, Lars Geffers, Santosh Anand, David Rozado, Alon Magen, Elena Canidio, Massimiliano Pagani, Ivana Peluso, Nathalie Lin-Marq, Muriel Koch, Marchesa Bilio, Immacolata Cantiello, Roberta Verde, Cristian De Masi, Salvatore A. Bianchi, Juliette Cicchini, Elodie Perroud, Shprese Mehmeti, Emilie Dagand, Sabine Schrinner, Asja Nürnberger, Katja Schmidt, Katja Metz, Christina Zwingmann, Norbert Brieske, Cindy Springer, Ana Martinez Hernandez, Sarah Herzog, Frauke Grabbe, Cornelia Sieverding, Barbara Fischer, Kathrin Schrader, Maren Brockmeyer, Sarah Dettmer, Christin Helbig, Violaine Alunni, Marie-Annick Battaini, Carole Mura, Charlotte N. Henrichsen, Raquel Garcia-Lopez, Diego Echevarria, Eduardo Puelles, Elena Garcia-Calero, Stefan Kruse, Markus Uhr, Christine Kauck, Guangjie Feng, Nestor Milyaev, Chuang Kee Ong, Lalit Kumar, MeiSze Lam, Colin A. Semple, Attila Gyenesei, Stefan Mundlos, Uwe Radelof, Hans Lehrach, Paolo Sarmientos, Alexandre Reymond, Duncan R. Davidson, Pascal Dollé, Stylianos E. Antonarakis, Marie-Laure Yaspo, Salvador Martinez, Richard A. Baldock, Gregor Eichele, Andrea Ballabio
PLoS Biol. 2011 Jan; 9(1): e1000582. Published online 2011 Jan 18. doi: 10.1371/journal.pbio.1000582
PMCID:
PMC3022534
AbstractArticlePDF–3.8M
14.
Zscan4 regulates telomere elongation and genomic stability in ES cells
Michal Zalzman, Geppino Falco, Lioudmila V. Sharova, Akira Nishiyama, Marshall Thomas, Sung-Lim Lee, Carole A. Stagg, Hien G. Hoang, Hsih-Te Yang, Fred E. Indig, Robert P. Wersto, Minoru S. H. Ko
Nature. Author manuscript; available in PMC 2010 Oct 8.
Published in final edited form as: Nature. 2010 Apr 8; 464(7290): 858–863. Published online 2010 Mar 24. doi: 10.1038/nature08882
PMCID:
PMC2851843
AbstractArticlePDF–1.8M
15.
Uncovering early response of gene regulatory networks in ES cells by systematic induction of transcription factors
Akira Nishiyama, Li Xin, Alexei A. Sharov, Marshall Thomas, Gregory Mowrer, Emily Meyers, Yulan Piao, Samir Mehta, Sarah Yee, Yuhki Nakatake, Carole Stagg, Lioudmila Sharova, Lina S. Correa-Cerro, Uwem Bassey, Hien Hoang, Eugene Kim, Richard Tapnio, Yong Qian, Dawood Dudekula, Michal Zalzman, Manxiang Li, Geppino Falco, Hsih-Te Yang, Sung-Lim Lee, Manuela Monti, Ilaria Stanghellini, Md. Nurul Islam, Ramaiah Nagaraja, Ilya Goldberg, Weidong Wang, Dan L. Longo, David Schlessinger, Minoru S. H. Ko
Cell Stem Cell. Author manuscript; available in PMC 2010 Oct 2.
Published in final edited form as: Cell Stem Cell. 2009 Oct 2; 5(4): 420–433. doi: 10.1016/j.stem.2009.07.012
PMCID:
PMC2770715
AbstractArticlePDF–2.6M
16.
Zscan4: a novel gene expressed exclusively in late 2-cell embryos and embryonic stem cells
Geppino Falco, Sung-Lim Lee, Ilaria Stanghellini, Uwem C. Bassey, Toshio Hamatani, Minoru S. H. Ko
Dev Biol. Author manuscript; available in PMC 2007 Sep 27.
Published in final edited form as: Dev Biol. 2007 Jul 15; 307(2): 539–550. Published online 2007 May 8. doi: 10.1016/j.ydbio.2007.05.003
PMCID:
PMC1994725
AbstractArticlePDF–4.7M
17.
RIKEN Integrated Sequence Analysis (RISA) System—384-Format Sequencing Pipeline with 384 Multicapillary Sequencer
Kazuhiro Shibata, Masayoshi Itoh, Katsunori Aizawa, Sumiharu Nagaoka, Nobuya Sasaki, Piero Carninci, Hideaki Konno, Junichi Akiyama, Katsuo Nishi, Tokuji Kitsunai, Hideo Tashiro, Mari Itoh, Noriko Sumi, Yoshiyuki Ishii, Shin Nakamura, Makoto Hazama, Tsutomu Nishine, Akira Harada, Rintaro Yamamoto, Hiroyuki Matsumoto, Sumito Sakaguchi, Takashi Ikegami, Katsuya Kashiwagi, Syuji Fujiwake, Kouji Inoue, Yoshiyuki Togawa, Masaki Izawa, Eiji Ohara, Masanori Watahiki, Yuko Yoneda, Tomokazu Ishikawa, Kaori Ozawa, Takumi Tanaka, Shuji Matsuura, Jun Kawai, Yasushi Okazaki, Masami Muramatsu, Yorinao Inoue, Akira Kira, Yoshihide Hayashizaki
Genome Res. 2000 Nov; 10(11): 1757–1771. doi: 10.1101/gr.152600
PMCID:
PMC310992
AbstractArticlePDF–3.4M
18.
Normalization and Subtraction of Cap-Trapper-Selected cDNAs to Prepare Full-Length cDNA Libraries for Rapid Discovery of New Genes
Piero Carninci, Yuko Shibata, Norihito Hayatsu, Yuichi Sugahara, Kazuhiro Shibata, Masayoshi Itoh, Hideaki Konno, Yasushi Okazaki, Masami Muramatsu, Yoshihide Hayashizaki
Genome Res. 2000 Oct; 10(10): 1617–1630. doi: 10.1101/gr.145100
PMCID:
PMC310980
AbstractArticlePDF–1.4M
19.
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences
Mammalian Gene Collection (MGC) Program Team
Proc Natl Acad Sci U S A. 2002 Dec 24; 99(26): 16899–16903. Published online 2002 Dec 11. doi: 10.1073/pnas.242603899
PMCID:
PMC139241
AbstractArticlePDF–118K

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