PMC Links for GEO Profiles (Select 120270143) - PMC

Select item 95767281.

Selective regulation of tuft cell-like small cell lung cancer by novel transcriptional co-activators C11orf53 and COLCA2

Chen Zhou, Hui Huang, Yunyi Wang, Erdem Sendinc, Yang Shi

Cell Discov. 2022; 8: 112. Published online 2022 Oct 18. doi: 10.1038/s41421-022-00470-7

PMCID:: PMC9576728

Article PDF–696K

Select item 94197072.

OCA-T1 and OCA-T2 are coactivators of POU2F3 in the tuft cell lineage

Xiaoli S. Wu, Xue-Yan He, Jonathan J. Ipsaro, Yu-Han Huang, Jonathan B. Preall, David Ng, Yan Ting Shue, Julien Sage, Mikala Egeblad, Leemor Joshua-Tor, Christopher R. Vakoc

Nature. Author manuscript; available in PMC 2022 Aug 27.

Published in final edited form as: Nature. 2022 Jul; 607(7917): 169–175. Published online 2022 May 16. doi: 10.1038/s41586-022-04842-7

PMCID:: PMC9419707

Abstract Article PDF–7.6M

Select item 79071503.

rs1944919 on chromosome 11q23.1 and its effector genes COLCA1/COLCA2 confer susceptibility to primary biliary cholangitis

Yuki Hitomi, Yoshihiro Aiba, Yosuke Kawai, Kaname Kojima, Kazuko Ueno, Nao Nishida, Minae Kawashima, Olivier Gervais, Seik-Soon Khor, Masao Nagasaki, Katsushi Tokunaga, Minoru Nakamura, Makoto Tsuiji

Sci Rep. 2021; 11: 4557. Published online 2021 Feb 25. doi: 10.1038/s41598-021-84042-x

PMCID:: PMC7907150

Abstract Article PDF–1.5M

Select item 55535684.

A role for mitochondrial translation in promotion of viability in K-Ras mutant cells

Timothy D. Martin, Danielle R. Cook, Mei Yuk Choi, Mamie Z. Li, Kevin M. Haigis, Stephen J. Elledge

Cell Rep. Author manuscript; available in PMC 2017 Aug 11.

Published in final edited form as: Cell Rep. 2017 Jul 11; 20(2): 427–438. doi: 10.1016/j.celrep.2017.06.061

PMCID:: PMC5553568

Abstract Article PDF–1.8M

Select item 40687975.

Large-scale genetic study in East Asians identifies six new loci associated with colorectal cancer risk

Ben Zhang, Wei-Hua Jia, Koichi Matsuda, Sun-Seog Kweon, Keitaro Matsuo, Yong-Bing Xiang, Aesun Shin, Sun Ha Jee, Dong-Hyun Kim, Qiuyin Cai, Jirong Long, Jiajun Shi, Wanqing Wen, Gong Yang, Yanfeng Zhang, Chun Li, Bingshan Li, Yan Guo, Zefang Ren, Bu-Tian Ji, Zhi-Zhong Pan, Atsushi Takahashi, Min-Ho Shin, Fumihiko Matsuda, Yu-Tang Gao, Jae Hwan Oh, Soriul Kim, Yoon-Ok Ahn, Genetics and Epidemiology of Colorectal Cancer Consortium (GECCO), Andrew T Chan, Jenny Chang-Claude, Martha L. Slattery, Colorectal Transdisciplinary (CORECT) Study, Stephen B. Gruber, Fredrick R. Schumacher, Stephanie L. Stenzel, Colon Cancer Family Registry (CCFR), Graham Casey, Hyeong-Rok Kim, Jin-Young Jeong, Ji Won Park, Hong-Lan Li, Satoyo Hosono, Sang-Hee Cho, Michiaki Kubo, Xiao-Ou Shu, Yi-Xin Zeng, Wei Zheng

Nat Genet. Author manuscript; available in PMC 2014 Dec 1.

Published in final edited form as: Nat Genet. 2014 Jun; 46(6): 533–542. Published online 2014 May 18. doi: 10.1038/ng.2985

PMCID:: PMC4068797

Abstract Article PDF–597K

Select item 39491676.

Identification of genes expressed by immune cells of the colon that are regulated by colorectal cancer-associated variants

Vanya D Peltekova, Mathieu Lemire, Aamer M Qazi, Syed H E Zaidi, Quang M Trinh, Ryszard Bielecki, Marianne Rogers, Lyndsey Hodgson, Mike Wang, David J A D’Souza, Sasan Zandi, Taryne Chong, Jennifer Y Y Kwan, Krystian Kozak, Richard De Borja, Lee Timms, Jagadish Rangrej, Milica Volar, Michelle Chan-Seng-Yue, Timothy Beck, Colleen Ash, Shawna Lee, Jianxin Wang, Paul C Boutros, Lincoln D Stein, John E Dick, Robert Gryfe, John D McPherson, Brent W Zanke, Aaron Pollett, Steven Gallinger, Thomas J Hudson

Int J Cancer. 2014 May 15; 134(10): 2330–2341. Published online 2013 Nov 13. doi: 10.1002/ijc.28557

PMCID:: PMC3949167

Abstract Article PDF–13M

Select item 36368127.

Identification of Genetic Susceptibility Loci for Colorectal Tumors in a Genome-wide Meta-analysis

Ulrike Peters, Shuo Jiao, Fredrick R. Schumacher, Carolyn M. Hutter, Aaron K. Aragaki, John A. Baron, Sonja I. Berndt, Stéphane Bézieau, Hermann Brenner, Katja Butterbach, Bette J. Caan, Peter T. Campbell, Christopher S. Carlson, Graham Casey, Andrew T. Chan, Jenny Chang-Claude, Stephen J. Chanock, Lin S. Chen, Gerhard A. Coetzee, Simon G. Coetzee, David V. Conti, Keith R. Curtis, David Duggan, Todd Edwards, Charles S. Fuchs, Steven Gallinger, Edward L. Giovannucci, Stephanie M. Gogarten, Stephen B. Gruber, Robert W. Haile, Tabitha A. Harrison, Richard B. Hayes, Brian E. Henderson, Michael Hoffmeister, John L. Hopper, Thomas J. Hudson, David J. Hunter, Rebecca D. Jackson, Sun Ha Jee, Mark A. Jenkins, Wei-Hua Jia, Laurence N. Kolonel, Charles Kooperberg, Sébastien Küry, Andrea Z. Lacroix, Cathy C. Laurie, Cecelia A. Laurie, Loic Le Marchand, Mathieu Lemire, David Levine, Noralane M. Lindor, Yan Liu, Jing Ma, Karen W. Makar, Keitaro Matsuo, Polly A. Newcomb, John D. Potter, Ross L. Prentice, Conghui Qu, Thomas Rohan, Stephanie A. Rosse, Robert E. Schoen, Daniela Seminara, Martha Shrubsole, Xiao-Ou Shu, Martha L. Slattery, Darin Taverna, Stephen N. Thibodeau, Cornelia M. Ulrich, Emily White, Yongbing Xiang, Brent W. Zanke, Yi-Xin Zeng, Ben Zhang, Wei Zheng, Li Hsu

Gastroenterology. Author manuscript; available in PMC 2014 Apr 1.

Published in final edited form as: Gastroenterology. 2013 Apr; 144(4): 799–807.e24. Published online 2012 Dec 22. doi: 10.1053/j.gastro.2012.12.020

PMCID:: PMC3636812

Abstract Article PDF–319K

Select item 32573568.

Meta-analysis of New Genome-wide Association Studies of Colorectal Cancer Risk

Ulrike Peters, Carolyn M. Hutter, Li Hsu, Fredrick R. Schumacher, David V. Conti, Christopher S. Carlson, Christopher K. Edlund, Robert W. Haile, Steven Gallinger, Brent W. Zanke, Mathieu Lemire, Jagadish Rangrej, Raakhee Vijayaraghavan, Andrew T. Chan, Aditi Hazra, David J. Hunter, Jing Ma, Charles S. Fuchs, Edward L. Giovannucci, Peter Kraft, Yan Liu, Lin Chen, Shuo Jiao, Karen W. Makar, Darin Taverna, Stephen B. Gruber, Gad Rennert, Victor Moreno, Cornelia M. Ulrich, Michael O. Woods, Roger C. Green, Patrick S. Parfrey, Ross L. Prentice, Charles Kooperberg, Rebecca D. Jackson, Andrea Z. LaCroix, Bette J. Caan, Richard B. Hayes, Sonja I. Berndt, Stephen J. Chanock, Robert E. Schoen, Jenny Chang-Claude, Michael Hoffmeister, Hermann Brenner, Bernd Frank, Stéphane Bézieau, Sébastien Küry, Martha L. Slattery, John L. Hopper, Mark A. Jenkins, Loic Le Marchand, Noralane M. Lindor, Polly A. Newcomb, Daniela Seminara, Thomas J. Hudson, David J. Duggan, John D. Potter, Graham Casey

Hum Genet. Author manuscript; available in PMC 2013 Feb 1.

Published in final edited form as: Hum Genet. 2012 Feb; 131(2): 217–234. Published online 2011 Jul 15. doi: 10.1007/s00439-011-1055-0

PMCID:: PMC3257356

Abstract Article PDF–448K

Select item 31780599.

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas

Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042

PMCID:: PMC3178059

Abstract Article PDF–1.0M

Select item 308178410.

Generalizability and Epidemiologic Characterization of Eleven Colorectal Cancer GWAS Hits in Multiple Populations

Jing He, Lynne R. Wilkens, Daniel O. Stram, Laurence N. Kolonel, Brian E. Henderson, Anna H. Wu, Loic Le Marchand, Christopher A. Haiman

Cancer Epidemiol Biomarkers Prev. Author manuscript; available in PMC 2012 Jan 1.

Published in final edited form as: Cancer Epidemiol Biomarkers Prev. 2011 Jan; 20(1): 70–81. Published online 2010 Nov 11. doi: 10.1158/1055-9965.EPI-10-0892

PMCID:: PMC3081784

Abstract Article PDF–367K

Select item 277800411.

Genome-wide association scan identifies a colorectal cancer susceptibility locus on 11q23 and replicates risk loci at 8q24 and 18q21

Albert Tenesa, Susan M Farrington, James GD Prendergast, Mary E Porteous, Marion Walker, Naila Haq, Rebecca A Barnetson, Evropi Theodoratou, Roseanne Cetnarskyj, Nicola Cartwright, Colin Semple, Andrew J Clark, Fiona JL Reid, Lorna A Smith, Kostas Kavoussanakis, Thibaud Koessler, Paul DP Pharoah, Stephan Buch, Clemens Schafmayer, Jürgen Tepel, Stefan Schreiber, Henry Völzke, Carsten O Schmidt, Jochen Hampe, Jenny Chang-Claude, Michael Hoffmeister, Hermann Brenner, Stefan Wilkening, Federico Canzian, Gabriel Capella, Victor Moreno, Ian J Deary, John M Starr, Ian PM Tomlinson, Zoe Kemp, Kimberley Howarth, Luis Carvajal-Carmona, Emily Webb, Peter Broderick, Jayaram Vijayakrishnan, Richard S Houlston, Gad Rennert, Dennis Ballinger, Laura Rozek, Stephen B Gruber, Koichi Matsuda, Tomohide Kidokoro, Yusuke Nakamura, Brent W Zanke, Celia MT Greenwood, Jagadish Rangrej, Rafal Kustra, Alexandre Montpetit, Thomas J Hudson, Steven Gallinger, Harry Campbell, Malcolm G Dunlop

Nat Genet. Author manuscript; available in PMC 2009 Nov 17.

Published in final edited form as: Nat Genet. 2008 May; 40(5): 631–637. Published online 2008 Mar 30. doi: 10.1038/ng.133

PMCID:: PMC2778004

Abstract Article PDF–186K

Select item 135612912.

Diversification of transcriptional modulation: Large-scale identification and characterization of putative alternative promoters of human genes

Kouichi Kimura, Ai Wakamatsu, Yutaka Suzuki, Toshio Ota, Tetsuo Nishikawa, Riu Yamashita, Jun-ichi Yamamoto, Mitsuo Sekine, Katsuki Tsuritani, Hiroyuki Wakaguri, Shizuko Ishii, Tomoyasu Sugiyama, Kaoru Saito, Yuko Isono, Ryotaro Irie, Norihiro Kushida, Takahiro Yoneyama, Rie Otsuka, Katsuhiro Kanda, Takahide Yokoi, Hiroshi Kondo, Masako Wagatsuma, Katsuji Murakawa, Shinichi Ishida, Tadashi Ishibashi, Asako Takahashi-Fujii, Tomoo Tanase, Keiichi Nagai, Hisashi Kikuchi, Kenta Nakai, Takao Isogai, Sumio Sugano

Genome Res. 2006 Jan; 16(1): 55–65. doi: 10.1101/gr.4039406

PMCID:: PMC1356129

Abstract Article PDF–438K

Select item 52892813.

The Status, Quality, and Expansion of the NIH Full-Length cDNA Project: The Mammalian Gene Collection (MGC)

Genome Res. 2004 Oct; 14(10b): 2121–2127. doi: 10.1101/gr.2596504

Correction in:: Genome Res. 2006 Jun; 16(6): 804.

PMCID:: PMC528928

Abstract Article PDF–140K

Select item 13924114.

Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences

Mammalian Gene Collection (MGC) Program Team

Proc Natl Acad Sci U S A. 2002 Dec 24; 99(26): 16899–16903. Published online 2002 Dec 11. doi: 10.1073/pnas.242603899

PMCID:: PMC139241

Abstract Article PDF–118K

Select item 1626715.

Shotgun sequencing of the human transcriptome with ORF expressed sequence tags

Emmanuel Dias Neto, Ricardo Garcia Correa, Sergio Verjovski-Almeida, Marcelo R. S. Briones, Maria Aparecida Nagai, Wilson da Silva, Jr., Marco Antonio Zago, Silvana Bordin, Fernando Ferreira Costa, Gustavo Henrique Goldman, Alex F. Carvalho, Adriana Matsukuma, Gilson S. Baia, David H. Simpson, Adriana Brunstein, Paulo S. L. de Oliveira, Philipp Bucher, C. Victor Jongeneel, Michael J. O'Hare, Fernando Soares, Ricardo R. Brentani, Luis F. L. Reis, Sandro J. de Souza, Andrew J. G. Simpson

Proc Natl Acad Sci U S A. 2000 Mar 28; 97(7): 3491–3496. doi: 10.1073/pnas.97.7.3491

PMCID:: PMC16267

Abstract Article PDF–111K

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