PMC Links for GEO Profiles (Select 120041771) - PMC

Reza Pourhaghighi, Peter E. A. Ash, Sadhna Phanse, Florian Goebels, Lucas Z. M. Hu, Siwei Chen, Yingying Zhang, Shayne D. Wierbowski, Samantha Boudeau, Mohamed T. Moutaoufik, Ramy H. Malty, Edyta Malolepsza, Kalliopi Tsafou, Aparna Nathan, Graham Cromar, Hongbo Guo, Ali Al Abdullatif, Daniel J. Apicco, Lindsay A. Becker, Aaron D. Gitler, Stefan M. Pulst, Ahmed Youssef, Ryan Hekman, Pierre C. Havugimana, Carl A. White, Benjamin C. Blum, Antonia Ratti, Camron D. Bryant, John Parkinson, Kasper Lage, Mohan Babu, Haiyuan Yu, Gary D. Bader, Benjamin Wolozin, Andrew Emili

Cell Syst. Author manuscript; available in PMC 2021 Apr 22.

Published in final edited form as: Cell Syst. 2020 Apr 22; 10(4): 333–350.e14. doi: 10.1016/j.cels.2020.03.003

Correction in:: Cell Syst. 2020 Aug 26; 11(2): 208.

PMCID:: PMC7938770

Abstract Article PDF–2.0M

Select item 64661164.

Impact of Fgf10 deficiency on pulmonary vasculature formation in a mouse model of bronchopulmonary dysplasia

Cho-Ming Chao, Alena Moiseenko, Djuro Kosanovic, Stefano Rivetti, Elie El Agha, Jochen Wilhelm, Marian Kampschulte, Faady Yahya, Harald Ehrhardt, Klaus-Peter Zimmer, Guillermo Barreto, Albert A Rizvanov, Ralph T Schermuly, Irwin Reiss, Rory E Morty, Robbert J Rottier, Saverio Bellusci, Jin-San Zhang

Hum Mol Genet. 2019 May 1; 28(9): 1429–1444. Published online 2018 Dec 19. doi: 10.1093/hmg/ddy439

PMCID:: PMC6466116

Abstract Article PDF–52M

Select item 64027015.

Furin, a transcriptional target of NKX2-5, has an essential role in heart development and function

Laurent Dupays, Norma Towers, Sophie Wood, Anna David, Daniel J. Stuckey, Timothy Mohun

PLoS One. 2019; 14(3): e0212992. Published online 2019 Mar 6. doi: 10.1371/journal.pone.0212992

PMCID:: PMC6402701

Abstract Article PDF–4.3M

Select item 58095166.

Deficits in Col5a2 Expression Result in Novel Skin and Adipose Abnormalities and Predisposition to Aortic Aneurysms and Dissections

Arick C. Park, Noel Phan, Dawiyat Massoudi, Zhenjie Liu, John F. Kernien, Sheila M. Adams, Jeffrey M. Davidson, David E. Birk, Bo Liu, Daniel S. Greenspan

Am J Pathol. 2017 Oct; 187(10): 2300–2311. doi: 10.1016/j.ajpath.2017.06.006

PMCID:: PMC5809516

Abstract Article

Select item 56537877.

How aging impacts skin biomechanics: a multiscale study in mice

Barbara Lynch, Christelle Bonod-Bidaud, Guillaume Ducourthial, Jean-Sébastien Affagard, Stéphane Bancelin, Sotiris Psilodimitrakopoulos, Florence Ruggiero, Jean-Marc Allain, Marie-Claire Schanne-Klein

Sci Rep. 2017; 7: 13750. Published online 2017 Oct 23. doi: 10.1038/s41598-017-13150-4

PMCID:: PMC5653787

Abstract Article PDF–2.5M

Select item 52231598.

Quantitative proteomic profiling of the extracellular matrix of pancreatic islets during the angiogenic switch and insulinoma progression

Alexandra Naba, Karl R. Clauser, D. R. Mani, Steven A. Carr, Richard O. Hynes

Sci Rep. 2017; 7: 40495. Published online 2017 Jan 10. doi: 10.1038/srep40495

PMCID:: PMC5223159

Abstract Article PDF–2.3M

Select item 51648529.

Fgf10 deficiency is causative for lethality in a mouse model of bronchopulmonary dysplasia

Cho-Ming Chao, Faady Yahya, Alena Moiseenko, Caterina Tiozzo, Amit Shrestha, Negah Ahmadvand, Elie El Agha, Jennifer Quantius, Salma Dilai, Vahid Kheirollahi, Matthew Jones, Jochen Wilhem, Gianni Carraro, Harald Ehrhardt, Klaus-Peter Zimmer, Guillermo Barreto, Katrin Ahlbrecht, Rory E. Morty, Susanne Herold, Rosanna G. Abellar, Werner Seeger, Ralph Schermuly, Jin-San Zhang, Parviz Minoo, Saverio Bellusci

J Pathol. Author manuscript; available in PMC 2018 Jan 1.

Published in final edited form as: J Pathol. 2017 Jan; 241(1): 91–103. Published online 2016 Nov 26. doi: 10.1002/path.4834

PMCID:: PMC5164852

Abstract Article PDF–2.8M

Select item 448346310.

Homozygosity and Heterozygosity for Null Col5a2 Alleles Produce Embryonic Lethality and a Novel Classic Ehlers-Danlos Syndrome–Related Phenotype

Arick C. Park, Charlotte L. Phillips, Ferris M. Pfeiffer, Drew A. Roenneburg, John F. Kernien, Sheila M. Adams, Jeffrey M. Davidson, David E. Birk, Daniel S. Greenspan

Am J Pathol. 2015 Jul; 185(7): 2000–2011. doi: 10.1016/j.ajpath.2015.03.022

PMCID:: PMC4483463

Abstract Article PDF–2.3M

Select item 431955911.

A high resolution spatiotemporal atlas of gene expression of the developing mouse brain

Carol L. Thompson, Lydia Ng, Vilas Menon, Salvador Martinez, Chang-Kyu Lee, Katie Glattfelder, Susan M. Sunkin, Alex Henry, Christopher Lau, Chinh Dang, Raquel Garcia-Lopez, Almudena Martinez-Ferre, Ana Pombero, John L.R. Rubenstein, Wayne B. Wakeman, John Hohmann, Nick Dee, Andrew J. Sodt, Rob Young, Kimberly Smith, Thuc-Nghi Nguyen, Jolene Kidney, Leonard Kuan, Andreas Jeromin, Ajamete Kaykas, Jeremy Miller, Damon Page, Geri Orta, Amy Bernard, Zackery Riley, Simon Smith, Paul Wohnoutka, Mike Hawrylycz, Luis Puelles, Allan R. Jones

Neuron. Author manuscript; available in PMC 2015 Jul 16.

Published in final edited form as: Neuron. 2014 Jul 16; 83(2): 309–323. Published online 2014 Jun 19. doi: 10.1016/j.neuron.2014.05.033

PMCID:: PMC4319559

Abstract Article PDF–3.0M

Select item 428193512.

Difference in expression of hepatic microRNAs miR-29c, miR-34a, miR-155, and miR-200b is associated with strain-specific susceptibility to dietary nonalcoholic steatohepatitis in mice

Igor P. Pogribny, Athena Starlard-Davenport, Volodymyr P. Tryndyak, Tao Han, Sharon A. Ross, Ivan Rusyn, Frederick A. Beland

Lab Invest. Author manuscript; available in PMC 2015 Jan 2.

Published in final edited form as: Lab Invest. 2010 Oct; 90(10): 1437–1446. Published online 2010 Jun 14. doi: 10.1038/labinvest.2010.113

PMCID:: PMC4281935

Abstract Article PDF–547K

Select item 374651913.

Ngn3⁺ endocrine progenitor cells control the fate and morphogenesis of pancreatic ductal epithelium

Judith Magenheim, Allon M. Klein, Ben Z. Stanger, Ruth Ashery-Padan, Beatriz Sosa-Pineda, Guoqiang Gu, Yuval Dor

Dev Biol. Author manuscript; available in PMC 2013 Aug 19.

Published in final edited form as: Dev Biol. 2011 Nov 1; 359(1): 26–36. Published online 2011 Aug 17. doi: 10.1016/j.ydbio.2011.08.006

PMCID:: PMC3746519

Abstract Article PDF–6.1M

Select item 369664614.

Comparative Proteomic Analysis of Supportive and Unsupportive Extracellular Matrix Substrates for Human Embryonic Stem Cell Maintenance

Despina Soteriou, Banu Iskender, Adam Byron, Jonathan D. Humphries, Simon Borg-Bartolo, Marie-Claire Haddock, Melissa A. Baxter, David Knight, Martin J. Humphries, Susan J. Kimber

J Biol Chem. 2013 Jun 28; 288(26): 18716–18731. Published online 2013 May 8. doi: 10.1074/jbc.M113.463372

PMCID:: PMC3696646

Abstract Article PDF–5.0M

Select item 356279015.

Critical roles of type III phosphatidylinositol phosphate kinase in murine embryonic visceral endoderm and adult intestine

Shunsuke Takasuga, Yasuo Horie, Junko Sasaki, Ge-Hong Sun-Wada, Nobuyuki Kawamura, Ryota Iizuka, Katsunori Mizuno, Satoshi Eguchi, Satoshi Kofuji, Hirotaka Kimura, Masakazu Yamazaki, Chihoko Horie, Eri Odanaga, Yoshiko Sato, Shinsuke Chida, Kenji Kontani, Akihiro Harada, Toshiaki Katada, Akira Suzuki, Yoh Wada, Hirohide Ohnishi, Takehiko Sasaki

Proc Natl Acad Sci U S A. 2013 Jan 29; 110(5): 1726–1731. Published online 2013 Jan 15. doi: 10.1073/pnas.1213212110

PMCID:: PMC3562790

Abstract Article PDF–1.1M

Select item 332257216.

The Matrisome: In Silico Definition and In Vivo Characterization by Proteomics of Normal and Tumor Extracellular Matrices

Alexandra Naba, Karl R. Clauser, Sebastian Hoersch, Hui Liu, Steven A. Carr, Richard O. Hynes

Mol Cell Proteomics. 2012 Apr; 11(4): M111.014647. Published online 2011 Dec 9. doi: 10.1074/mcp.M111.014647

PMCID:: PMC3322572

Abstract Article PDF–7.3M

Select item 318949217.

Three-dimensional visualisation of testis cord morphogenesis, a novel tubulogenic mechanism in development

Alexander N. Combes, Emmanuelle Lesieur, Vincent R. Harley, Andrew H. Sinclair, Melissa H. Little, Dagmar Wilhelm, Peter Koopman

Dev Dyn. Author manuscript; available in PMC 2011 Oct 9.

Published in final edited form as: Dev Dyn. 2009 May; 238(5): 1033–1041. doi: 10.1002/dvdy.21925

PMCID:: PMC3189492

Abstract Article PDF–2.5M

Select item 317805918.

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas

Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042

PMCID:: PMC3178059

Abstract Article PDF–1.0M

Select item 312145319.

Regulation of Collagen Fibril Nucleation and Initial Fibril Assembly Involves Coordinate Interactions with Collagens V and XI in Developing Tendon

Richard J. Wenstrup, Simone M. Smith, Jane B. Florer, Guiyun Zhang, David P. Beason, Robert E. Seegmiller, Louis J. Soslowsky, David E. Birk

J Biol Chem. 2011 Jun 10; 286(23): 20455–20465. Published online 2011 Apr 5. doi: 10.1074/jbc.M111.223693

PMCID:: PMC3121453

Abstract Article PDF–3.9M

Select item 302253420.

A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo

Graciana Diez-Roux, Sandro Banfi, Marc Sultan, Lars Geffers, Santosh Anand, David Rozado, Alon Magen, Elena Canidio, Massimiliano Pagani, Ivana Peluso, Nathalie Lin-Marq, Muriel Koch, Marchesa Bilio, Immacolata Cantiello, Roberta Verde, Cristian De Masi, Salvatore A. Bianchi, Juliette Cicchini, Elodie Perroud, Shprese Mehmeti, Emilie Dagand, Sabine Schrinner, Asja Nürnberger, Katja Schmidt, Katja Metz, Christina Zwingmann, Norbert Brieske, Cindy Springer, Ana Martinez Hernandez, Sarah Herzog, Frauke Grabbe, Cornelia Sieverding, Barbara Fischer, Kathrin Schrader, Maren Brockmeyer, Sarah Dettmer, Christin Helbig, Violaine Alunni, Marie-Annick Battaini, Carole Mura, Charlotte N. Henrichsen, Raquel Garcia-Lopez, Diego Echevarria, Eduardo Puelles, Elena Garcia-Calero, Stefan Kruse, Markus Uhr, Christine Kauck, Guangjie Feng, Nestor Milyaev, Chuang Kee Ong, Lalit Kumar, MeiSze Lam, Colin A. Semple, Attila Gyenesei, Stefan Mundlos, Uwe Radelof, Hans Lehrach, Paolo Sarmientos, Alexandre Reymond, Duncan R. Davidson, Pascal Dollé, Stylianos E. Antonarakis, Marie-Laure Yaspo, Salvador Martinez, Richard A. Baldock, Gregor Eichele, Andrea Ballabio

PLoS Biol. 2011 Jan; 9(1): e1000582. Published online 2011 Jan 18. doi: 10.1371/journal.pbio.1000582

PMCID:: PMC3022534

Abstract Article PDF–3.8M

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