PMC Links for GEO Profiles (Select 120035830) - PMC

Xiaowen Chen, Alan T. Tang, Joanna Tober, Jisheng Yang, N. Adrian Leu, Stephanie Sterling, Mei Chen, Yiqing Yang, Patricia Mericko-Ishizuka, Nancy A. Speck, Mark L. Kahn

Dev Cell. Author manuscript; available in PMC 2023 Dec 5.

Published in final edited form as: Dev Cell. 2022 Dec 5; 57(23): 2652–2660.e3. doi: 10.1016/j.devcel.2022.11.003

PMCID:: PMC9752200

Abstract Article PDF–1.3M

Select item 97096934.

Sonic Hedgehog is not a limb morphogen but acts as a trigger to specify all digits in mice

Jianjian Zhu, Rashmi Patel, Anna Trofka, Brian D. Harfe, Susan Mackem

Dev Cell. Author manuscript; available in PMC 2023 Sep 12.

Published in final edited form as: Dev Cell. 2022 Sep 12; 57(17): 2048–2062.e4. Published online 2022 Aug 16. doi: 10.1016/j.devcel.2022.07.016

PMCID:: PMC9709693

Abstract Article PDF–2.6M

Select item 92058575.

Context-dependent enhancer function revealed by targeted inter-TAD relocation

Christopher Chase Bolt, Lucille Lopez-Delisle, Aurélie Hintermann, Bénédicte Mascrez, Antonella Rauseo, Guillaume Andrey, Denis Duboule

Nat Commun. 2022; 13: 3488. Published online 2022 Jun 17. doi: 10.1038/s41467-022-31241-3

PMCID:: PMC9205857

Abstract Article PDF–2.3M

Select item 84977786.

Tbx4 function during hindlimb development reveals a mechanism that explains the origins of proximal limb defects

Veronique Duboc, Fatima A. Sulaiman, Eleanor Feneck, Anna Kucharska, Donald Bell, Muriel Holder-Espinasse, Malcolm P. O. Logan

Development. 2021 Oct 1; 148(19): dev199580. Published online 2021 Sep 24. doi: 10.1242/dev.199580

PMCID:: PMC8497778

Abstract Article

Select item 84517607.

Dbx2 regulation in limbs suggests interTAD sharing of enhancers

Leonardo Beccari, Gabriel Jaquier, Lucille Lopez‐Delisle, Eddie Rodriguez‐Carballo, Bénédicte Mascrez, Sandra Gitto, Joost Woltering, Denis Duboule

Dev Dyn. 2021 Sep; 250(9): 1280–1299. Published online 2021 Mar 1. doi: 10.1002/dvdy.303

PMCID:: PMC8451760

Abstract Article PDF–16M

Select item 83622918.

Geminin is required for Hox gene regulation to pattern the developing limb

Emily M.A. Lewis, Savita Sankar, Caili Tong, Ethan Patterson, Laura E. Waller, Paul Gontarz, Bo Zhang, David M. Ornitz, Kristen L. Kroll

Dev Biol. Author manuscript; available in PMC 2021 Aug 13.

Published in final edited form as: Dev Biol. 2020 Aug 1; 464(1): 11–23. Published online 2020 May 23. doi: 10.1016/j.ydbio.2020.05.007

PMCID:: PMC8362291

Abstract Article PDF–2.6M

Select item 82376669.

Developmental and sexual dimorphic atlas of the prenatal mouse external genitalia at the single-cell level

Ciro Maurizio Amato, Humphrey Hung-Chang Yao

Proc Natl Acad Sci U S A. 2021 Jun 22; 118(25): e2103856118. Published online 2021 Jun 21. doi: 10.1073/pnas.2103856118

PMCID:: PMC8237666

Abstract Article PDF–3.3M

Select item 818958110.

Hoxa10 mediates positional memory to govern stem cell function in adult skeletal muscle

Kiyoshi Yoshioka, Hiroshi Nagahisa, Fumihito Miura, Hiromitsu Araki, Yasutomi Kamei, Yasuo Kitajima, Daiki Seko, Jumpei Nogami, Yoshifumi Tsuchiya, Narihiro Okazaki, Akihiko Yonekura, Seigo Ohba, Yoshinori Sumita, Ko Chiba, Kosei Ito, Izumi Asahina, Yoshihiro Ogawa, Takashi Ito, Yasuyuki Ohkawa, Yusuke Ono

Sci Adv. 2021 Jun; 7(24): eabd7924. Published online 2021 Jun 9. doi: 10.1126/sciadv.abd7924

PMCID:: PMC8189581

Abstract Article PDF–7.8M

Select item 818478011.

HOXA13 in etiology and oncogenic potential of Barrett’s esophagus

Vincent T. Janmaat, Kateryna Nesteruk, Manon C. W. Spaander, Auke P. Verhaar, Bingting Yu, Rodrigo A. Silva, Wayne A. Phillips, Marcin Magierowski, Anouk van de Winkel, H. Scott Stadler, Tatiana Sandoval-Guzmán, Luc J. W. van der Laan, Ernst J. Kuipers, Ron Smits, Marco J. Bruno, Gwenny M. Fuhler, Nicholas J. Clemons, Maikel P. Peppelenbosch

Nat Commun. 2021; 12: 3354. Published online 2021 Jun 7. doi: 10.1038/s41467-021-23641-8

PMCID:: PMC8184780

Abstract Article PDF–13M

Select item 776836712.

Transcriptional Trajectories in Mouse Limb Buds Reveal the Transition from Anterior-Posterior to Proximal-Distal Patterning at Early Limb Bud Stage

Ines Desanlis, Rachel Paul, Marie Kmita

J Dev Biol. 2020 Dec; 8(4): 31. Published online 2020 Dec 7. doi: 10.3390/jdb8040031

PMCID:: PMC7768367

Abstract Article PDF–9.5M

Select item 770466613.

Lysine demethylase 7a regulates murine anterior-posterior development by modulating the transcription of Hox gene cluster

Yoshiki Higashijima, Nao Nagai, Masamichi Yamamoto, Taro Kitazawa, Yumiko K. Kawamura, Akashi Taguchi, Natsuko Nakada, Masaomi Nangaku, Tetsushi Furukawa, Hiroyuki Aburatani, Hiroki Kurihara, Youichiro Wada, Yasuharu Kanki

Commun Biol. 2020; 3: 725. Published online 2020 Nov 30. doi: 10.1038/s42003-020-01456-5

PMCID:: PMC7704666

Abstract Article PDF–1.3M

Select item 743800414.

Loss of U11 small nuclear RNA in the developing mouse limb results in micromelia

Kyle D. Drake, Christopher Lemoine, Gabriela S. Aquino, Anna M. Vaeth, Rahul N. Kanadia

Development. 2020 Nov 1; 147(21): dev190967. Published online 2020 Aug 14. doi: 10.1242/dev.190967

PMCID:: PMC7438004

Abstract Article

Select item 726966115.

Proximo-distal positional information encoded by an Fgf-regulated gradient of homeodomain transcription factors in the vertebrate limb

Irene Delgado, Alejandra C. López-Delgado, Alberto Roselló-Díez, Giovanna Giovinazzo, Vanessa Cadenas, Laura Fernández-de-Manuel, Fátima Sánchez-Cabo, Matthew J. Anderson, Mark Lewandoski, Miguel Torres

Sci Adv. 2020 Jun; 6(23): eaaz0742. Published online 2020 Jun 3. doi: 10.1126/sciadv.aaz0742

PMCID:: PMC7269661

Abstract Article PDF–5.4M

Select item 725995116.

Lin28a/let-7 pathway modulates the Hox code via Polycomb regulation during axial patterning in vertebrates

Tempei Sato, Kensuke Kataoka, Yoshiaki Ito, Shigetoshi Yokoyama, Masafumi Inui, Masaki Mori, Satoru Takahashi, Keiichi Akita, Shuji Takada, Hiroe Ueno-Kudoh, Hiroshi Asahara

eLife. 2020; 9: e53608. Published online 2020 May 29. doi: 10.7554/eLife.53608

PMCID:: PMC7259951

Abstract Article PDF–5.5M

Select item 723742217.

HOX13-dependent chromatin accessibility underlies the transition towards the digit development program

Ines Desanlis, Yacine Kherdjemil, Alexandre Mayran, Yasser Bouklouch, Claudia Gentile, Rushikesh Sheth, Rolf Zeller, Jacques Drouin, Marie Kmita

Nat Commun. 2020; 11: 2491. Published online 2020 May 19. doi: 10.1038/s41467-020-16317-2

PMCID:: PMC7237422

Abstract Article PDF–1.8M

Select item 698639418.

Conditional inactivation of Fgfr1 in mouse defines its role in limb bud establishment, outgrowth and digit patterning

Jamie M. Verheyden, Mark Lewandoski, Chuxia Deng, Brian D. Harfe, Xin Sun

Development. Author manuscript; available in PMC 2020 Jan 28.

Published in final edited form as: Development. 2005 Oct; 132(19): 4235–4245. Published online 2005 Aug 24. doi: 10.1242/dev.02001

PMCID:: PMC6986394

Abstract Article PDF–2.0M

Select item 696949719.

The formation of the thumb requires direct modulation of Gli3 transcription by Hoxa13

Maria Félix Bastida, Rocío Pérez-Gómez, Anna Trofka, Jianjian Zhu, Alvaro Rada-Iglesias, Rushikesh Sheth, H. Scott Stadler, Susan Mackem, Marian A. Ros

Proc Natl Acad Sci U S A. 2020 Jan 14; 117(2): 1090–1096. Published online 2020 Jan 2. doi: 10.1073/pnas.1919470117

PMCID:: PMC6969497

Abstract Article PDF–1.1M

Select item 672422120.

The emergent landscape of the mouse gut endoderm at single-cell resolution

Sonja Nowotschin, Manu Setty, Ying-Yi Kuo, Vincent Liu, Vidur Garg, Roshan Sharma, Claire S. Simon, Nestor Saiz, Rui Gardner, Stéphane C. Boutet, Deanna M. Church, Pamela A. Hoodless, Anna-Katerina Hadjantonakis, Dana Pe’er

Nature. Author manuscript; available in PMC 2019 Nov 1.

Published in final edited form as: Nature. 2019 May; 569(7756): 361–367. Published online 2019 Apr 8. doi: 10.1038/s41586-019-1127-1