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Items: 19

1.
Regional and cell-type-specific afferent and efferent projections of the mouse claustrum
Quanxin Wang, Yun Wang, Hsien-Chi Kuo, Peng Xie, Xiuli Kuang, Karla E. Hirokawa, Maitham Naeemi, Shenqin Yao, Matt Mallory, Ben Ouellette, Phil Lesnar, Yaoyao Li, Min Ye, Chao Chen, Wei Xiong, Leila Ahmadinia, Laila El-Hifnawi, Ali Cetin, Staci A. Sorensen, Julie A. Harris, Hongkui Zeng, Christof Koch
Cell Rep. Author manuscript; available in PMC 2023 Oct 23.
Published in final edited form as: Cell Rep. 2023 Feb 28; 42(2): 112118. Published online 2023 Feb 13. doi: 10.1016/j.celrep.2023.112118
PMCID:
PMC10415534
AbstractArticlePDF–3.9M
2.
Pyramidal neurons form active, transient, multilayered circuits perturbed by autism-associated mutations at the inception of neocortex
Martin Munz, Arjun Bharioke, Georg Kosche, Verónica Moreno-Juan, Alexandra Brignall, Tiago M. Rodrigues, Alexandra Graff-Meyer, Talia Ulmer, Stephanie Haeuselmann, Dinko Pavlinic, Nicole Ledergerber, Brigitte Gross-Scherf, Balázs Rózsa, Jacek Krol, Simone Picelli, Cameron S. Cowan, Botond Roska
Cell. 2023 Apr 27; 186(9): 1930–1949.e31. doi: 10.1016/j.cell.2023.03.025
PMCID:
PMC10156177
AbstractArticle
3.
Human midbrain dopaminergic neuronal differentiation markers predict cell therapy outcomes in a Parkinson’s disease model
Peibo Xu, Hui He, Qinqin Gao, Yingying Zhou, Ziyan Wu, Xiao Zhang, Linyu Sun, Gang Hu, Qian Guan, Zhiwen You, Xinyue Zhang, Wenping Zheng, Man Xiong, Yuejun Chen
J Clin Invest. 2022 Jul 15; 132(14): e156768. Published online 2022 Jul 15. doi: 10.1172/JCI156768
PMCID:
PMC9282930
AbstractArticlePDF–19M
4.
Cell-Type-Specific Gene Expression in Developing Mouse Neocortex: Intermediate Progenitors Implicated in Axon Development
Francesco Bedogni, Robert F. Hevner
Front Mol Neurosci. 2021; 14: 686034. Published online 2021 Jul 12. doi: 10.3389/fnmol.2021.686034
PMCID:
PMC8313239
AbstractArticlePDF–1.6M
5.
The Allen Mouse Brain Common Coordinate Framework: A 3D Reference Atlas
Quanxin Wang, Song-Lin Ding, Yang Li, Josh Royall, David Feng, Phil Lesnar, Nile Graddis, Maitham Naeemi, Benjamin Facer, Anh Ho, Tim Dolbeare, Brandon Blanchard, Nick Dee, Wayne Wakeman, Karla E. Hirokawa, Aaron Szafer, Susan M. Sunkin, Seung Wook Oh, Amy Bernard, John W. Phillips, Michael Hawrylycz, Christof Koch, Hongkui Zeng, Julie A. Harris, Lydia Ng
Cell. Author manuscript; available in PMC 2021 May 26.
Published in final edited form as: Cell. 2020 May 14; 181(4): 936–953.e20. Published online 2020 May 7. doi: 10.1016/j.cell.2020.04.007
PMCID:
PMC8152789
AbstractArticlePDF–3.0M
6.
Neurexophilin4 is a selectively expressed α-neurexin ligand that modulates specific cerebellar synapses and motor functions
Xiangling Meng, Christopher M McGraw, Wei Wang, Junzhan Jing, Szu-Ying Yeh, Li Wang, Joanna Lopez, Amanda M Brown, Tao Lin, Wu Chen, Mingshan Xue, Roy V Sillitoe, Xiaolong Jiang, Huda Y Zoghbi
eLife. 2019; 8: e46773. Published online 2019 Sep 16. doi: 10.7554/eLife.46773
PMCID:
PMC6763262
AbstractArticlePDF–3.5M
7.
A gut-to-brain signal of fluid osmolarity controls thirst satiation
Christopher A. Zimmerman, Erica L. Huey, Jamie S. Ahn, Lisa R. Beutler, Chan Lek Tan, Seher Kosar, Ling Bai, Yiming Chen, Timothy V. Corpuz, Linda Madisen, Hongkui Zeng, Zachary A. Knight
Nature. Author manuscript; available in PMC 2019 Sep 27.
Published in final edited form as: Nature. 2019 Apr; 568(7750): 98–102. Published online 2019 Mar 27. doi: 10.1038/s41586-019-1066-x
PMCID:
PMC6483081
ArticlePDF–5.3M
8.
Single-cell RNA sequencing reveals midbrain dopamine neuron diversity emerging during mouse brain development
Katarína Tiklová, Åsa K. Björklund, Laura Lahti, Alessandro Fiorenzano, Sara Nolbrant, Linda Gillberg, Nikolaos Volakakis, Chika Yokota, Markus M. Hilscher, Thomas Hauling, Fredrik Holmström, Eliza Joodmardi, Mats Nilsson, Malin Parmar, Thomas Perlmann
Nat Commun. 2019; 10: 581. Published online 2019 Feb 4. doi: 10.1038/s41467-019-08453-1
PMCID:
PMC6362095
AbstractArticlePDF–4.6M
9.
Malformation of the Posterior Cerebellar Vermis Is a Common Neuroanatomical Phenotype of Genetically Engineered Mice on the C57BL/6 Background
Joshua A. Cuoco, Anthony W. Esposito, Shannon Moriarty, Ying Tang, Sonika Seth, Alyssa R. Toia, Elias B. Kampton, Yevgeniy Mayr, Mussarah Khan, Mohammad B. Khan, Brian R. Mullen, James B. Ackman, Faez Siddiqi, John H. Wolfe, Olga V. Savinova, Raddy L. Ramos
Cerebellum. Author manuscript; available in PMC 2019 Jan 10.
Published in final edited form as: Cerebellum. 2018 Apr; 17(2): 173–190. doi: 10.1007/s12311-017-0892-3
PMCID:
PMC6328048
AbstractArticlePDF–5.0M
10.
Transgenic mice for intersectional targeting of neural sensors and effectors with high specificity and performance
Linda Madisen, Aleena R. Garner, Daisuke Shimaoka, Amy S. Chuong, Nathan C. Klapoetke, Lu Li, Alexander van der Bourg, Yusuke Niino, Ladan Egolf, Claudio Monetti, Hong Gu, Maya Mills, Adrian Cheng, Bosiljka Tasic, Thuc Nghi Nguyen, Susan M. Sunkin, Andrea Benucci, Andras Nagy, Atsushi Miyawaki, Fritjof Helmchen, Ruth M. Empson, Thomas Knöpfel, Edward S. Boyden, R. Clay Reid, Matteo Carandini, Hongkui Zeng
Neuron. Author manuscript; available in PMC 2016 Mar 4.
Published in final edited form as: Neuron. 2015 Mar 4; 85(5): 942–958. doi: 10.1016/j.neuron.2015.02.022
PMCID:
PMC4365051
AbstractArticlePDF–1.3M
11.
A high resolution spatiotemporal atlas of gene expression of the developing mouse brain
Carol L. Thompson, Lydia Ng, Vilas Menon, Salvador Martinez, Chang-Kyu Lee, Katie Glattfelder, Susan M. Sunkin, Alex Henry, Christopher Lau, Chinh Dang, Raquel Garcia-Lopez, Almudena Martinez-Ferre, Ana Pombero, John L.R. Rubenstein, Wayne B. Wakeman, John Hohmann, Nick Dee, Andrew J. Sodt, Rob Young, Kimberly Smith, Thuc-Nghi Nguyen, Jolene Kidney, Leonard Kuan, Andreas Jeromin, Ajamete Kaykas, Jeremy Miller, Damon Page, Geri Orta, Amy Bernard, Zackery Riley, Simon Smith, Paul Wohnoutka, Mike Hawrylycz, Luis Puelles, Allan R. Jones
Neuron. Author manuscript; available in PMC 2015 Jul 16.
Published in final edited form as: Neuron. 2014 Jul 16; 83(2): 309–323. Published online 2014 Jun 19. doi: 10.1016/j.neuron.2014.05.033
PMCID:
PMC4319559
AbstractArticlePDF–3.0M
12.
Anatomical characterization of Cre driver mice for neural circuit mapping and manipulation
Julie A. Harris, Karla E. Hirokawa, Staci A. Sorensen, Hong Gu, Maya Mills, Lydia L. Ng, Phillip Bohn, Marty Mortrud, Benjamin Ouellette, Jolene Kidney, Kimberly A. Smith, Chinh Dang, Susan Sunkin, Amy Bernard, Seung Wook Oh, Linda Madisen, Hongkui Zeng
Front Neural Circuits. 2014; 8: 76. Published online 2014 Jul 10. doi: 10.3389/fncir.2014.00076
PMCID:
PMC4091307
AbstractArticlePDF–1.7M
13.
The protomap is propagated to cortical plate neurons through an Eomes-dependent intermediate map
Gina E. Elsen, Rebecca D. Hodge, Francesco Bedogni, Ray A. M. Daza, Branden R. Nelson, Naoko Shiba, Steven L. Reiner, Robert F. Hevner
Proc Natl Acad Sci U S A. 2013 Mar 5; 110(10): 4081–4086. Published online 2013 Feb 19. doi: 10.1073/pnas.1209076110
PMCID:
PMC3593833
AbstractArticlePDF–1.0M
14.
Expression profiling of mouse subplate reveals a dynamic gene network and disease association with autism and schizophrenia
Anna Hoerder-Suabedissen, Franziska M. Oeschger, Michelle L. Krishnan, T. Grant Belgard, Wei Zhi Wang, Sheena Lee, Caleb Webber, Enrico Petretto, A. David Edwards, Zoltán Molnár
Proc Natl Acad Sci U S A. 2013 Feb 26; 110(9): 3555–3560. Published online 2013 Feb 11. doi: 10.1073/pnas.1218510110
PMCID:
PMC3587197
AbstractArticlePDF–1.1M
15.
A conditional knockout resource for the genome–wide study of mouse gene function
William C. Skarnes, Barry Rosen, Anthony P. West, Manousos Koutsourakis, Wendy Bushell, Vivek Iyer, Alejandro O. Mujica, Mark Thomas, Jennifer Harrow, Tony Cox, David Jackson, Jessica Severin, Patrick Biggs, Jun Fu, Michael Nefedov, Pieter J. de Jong, A. Francis Stewart, Allan Bradley
Nature. Author manuscript; available in PMC 2013 Feb 14.
Published in final edited form as: Nature. 2011 Jun 15; 474(7351): 337–342. Published online 2011 Jun 15. doi: 10.1038/nature10163
PMCID:
PMC3572410
AbstractArticlePDF–1.1M
16.
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas
Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042
PMCID:
PMC3178059
AbstractArticlePDF–1.0M
17.
A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo
Graciana Diez-Roux, Sandro Banfi, Marc Sultan, Lars Geffers, Santosh Anand, David Rozado, Alon Magen, Elena Canidio, Massimiliano Pagani, Ivana Peluso, Nathalie Lin-Marq, Muriel Koch, Marchesa Bilio, Immacolata Cantiello, Roberta Verde, Cristian De Masi, Salvatore A. Bianchi, Juliette Cicchini, Elodie Perroud, Shprese Mehmeti, Emilie Dagand, Sabine Schrinner, Asja Nürnberger, Katja Schmidt, Katja Metz, Christina Zwingmann, Norbert Brieske, Cindy Springer, Ana Martinez Hernandez, Sarah Herzog, Frauke Grabbe, Cornelia Sieverding, Barbara Fischer, Kathrin Schrader, Maren Brockmeyer, Sarah Dettmer, Christin Helbig, Violaine Alunni, Marie-Annick Battaini, Carole Mura, Charlotte N. Henrichsen, Raquel Garcia-Lopez, Diego Echevarria, Eduardo Puelles, Elena Garcia-Calero, Stefan Kruse, Markus Uhr, Christine Kauck, Guangjie Feng, Nestor Milyaev, Chuang Kee Ong, Lalit Kumar, MeiSze Lam, Colin A. Semple, Attila Gyenesei, Stefan Mundlos, Uwe Radelof, Hans Lehrach, Paolo Sarmientos, Alexandre Reymond, Duncan R. Davidson, Pascal Dollé, Stylianos E. Antonarakis, Marie-Laure Yaspo, Salvador Martinez, Richard A. Baldock, Gregor Eichele, Andrea Ballabio
PLoS Biol. 2011 Jan; 9(1): e1000582. Published online 2011 Jan 18. doi: 10.1371/journal.pbio.1000582
PMCID:
PMC3022534
AbstractArticlePDF–3.8M
18.
RIKEN Integrated Sequence Analysis (RISA) System—384-Format Sequencing Pipeline with 384 Multicapillary Sequencer
Kazuhiro Shibata, Masayoshi Itoh, Katsunori Aizawa, Sumiharu Nagaoka, Nobuya Sasaki, Piero Carninci, Hideaki Konno, Junichi Akiyama, Katsuo Nishi, Tokuji Kitsunai, Hideo Tashiro, Mari Itoh, Noriko Sumi, Yoshiyuki Ishii, Shin Nakamura, Makoto Hazama, Tsutomu Nishine, Akira Harada, Rintaro Yamamoto, Hiroyuki Matsumoto, Sumito Sakaguchi, Takashi Ikegami, Katsuya Kashiwagi, Syuji Fujiwake, Kouji Inoue, Yoshiyuki Togawa, Masaki Izawa, Eiji Ohara, Masanori Watahiki, Yuko Yoneda, Tomokazu Ishikawa, Kaori Ozawa, Takumi Tanaka, Shuji Matsuura, Jun Kawai, Yasushi Okazaki, Masami Muramatsu, Yorinao Inoue, Akira Kira, Yoshihide Hayashizaki
Genome Res. 2000 Nov; 10(11): 1757–1771. doi: 10.1101/gr.152600
PMCID:
PMC310992
AbstractArticlePDF–3.4M
19.
Normalization and Subtraction of Cap-Trapper-Selected cDNAs to Prepare Full-Length cDNA Libraries for Rapid Discovery of New Genes
Piero Carninci, Yuko Shibata, Norihito Hayatsu, Yuichi Sugahara, Kazuhiro Shibata, Masayoshi Itoh, Hideaki Konno, Yasushi Okazaki, Masami Muramatsu, Yoshihide Hayashizaki
Genome Res. 2000 Oct; 10(10): 1617–1630. doi: 10.1101/gr.145100
PMCID:
PMC310980
AbstractArticlePDF–1.4M

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