PMC Links for GEO Profiles (Select 117311132) - PMC

Reza Pourhaghighi, Peter E. A. Ash, Sadhna Phanse, Florian Goebels, Lucas Z. M. Hu, Siwei Chen, Yingying Zhang, Shayne D. Wierbowski, Samantha Boudeau, Mohamed T. Moutaoufik, Ramy H. Malty, Edyta Malolepsza, Kalliopi Tsafou, Aparna Nathan, Graham Cromar, Hongbo Guo, Ali Al Abdullatif, Daniel J. Apicco, Lindsay A. Becker, Aaron D. Gitler, Stefan M. Pulst, Ahmed Youssef, Ryan Hekman, Pierre C. Havugimana, Carl A. White, Benjamin C. Blum, Antonia Ratti, Camron D. Bryant, John Parkinson, Kasper Lage, Mohan Babu, Haiyuan Yu, Gary D. Bader, Benjamin Wolozin, Andrew Emili

Cell Syst. Author manuscript; available in PMC 2021 Apr 22.

Published in final edited form as: Cell Syst. 2020 Apr 22; 10(4): 333–350.e14. doi: 10.1016/j.cels.2020.03.003

Correction in:: Cell Syst. 2020 Aug 26; 11(2): 208.

PMCID:: PMC7938770

Abstract Article PDF–2.0M

Select item 78877614.

High-fat diet-induced GAIT element-mediated translational silencing of mRNAs encoding inflammatory proteins in macrophage protects against atherosclerosis

Abhijit Basu, Nina Dvorina, William M. Baldwin, III, Barsanjit Mazumder

FASEB J. Author manuscript; available in PMC 2021 May 1.

Published in final edited form as: FASEB J. 2020 May; 34(5): 6888–6906. Published online 2020 Mar 30. doi: 10.1096/fj.201903119R

PMCID:: PMC7887761

Abstract Article PDF–2.5M

Select item 74159915.

BioID screening of biotinylation sites using the avidin-like protein Tamavidin 2-REV identifies global interactors of stimulator of interferon genes (STING)

Kou Motani, Hidetaka Kosako

J Biol Chem. 2020 Aug 7; 295(32): 11174–11183. Published online 2020 Jun 17. doi: 10.1074/jbc.RA120.014323

PMCID:: PMC7415991

Abstract Article PDF–2.0M

Select item 72360606.

Cdh1-APC Regulates Protein Synthesis and Stress Granules in Neurons through an FMRP-Dependent Mechanism

Arielle N. Valdez-Sinon, Austin Lai, Liang Shi, Carly L. Lancaster, Avanti Gokhale, Victor Faundez, Gary J. Bassell

iScience. 2020 May 22; 23(5): 101132. Published online 2020 May 1. doi: 10.1016/j.isci.2020.101132

PMCID:: PMC7236060

Abstract Article PDF–6.1M

Select item 66674577.

Modification of messenger RNA by 2′-O-methylation regulates gene expression in vivo

Brittany A. Elliott, Hsiang-Ting Ho, Srivathsan V. Ranganathan, Sweta Vangaveti, Olga Ilkayeva, Hala Abou Assi, Alex K. Choi, Paul F. Agris, Christopher L. Holley

Nat Commun. 2019; 10: 3401. Published online 2019 Jul 30. doi: 10.1038/s41467-019-11375-7

PMCID:: PMC6667457

Abstract Article PDF–1.2M

Select item 66023008.

New roles for the de-ubiquitylating enzyme OTUD4 in an RNA–protein network and RNA granules

Richa Das, Lukas Schwintzer, Stanislav Vinopal, Eva Aguado Roca, Marc Sylvester, Ana-Maria Oprisoreanu, Susanne Schoch, Frank Bradke, Meike Broemer

J Cell Sci. 2019 Jun 15; 132(12): jcs229252. Published online 2019 Jun 17. doi: 10.1242/jcs.229252

PMCID:: PMC6602300

Abstract Article

Select item 62980409.

Irisin Mediates Effects on Bone and Fat via αV Integrin Receptors

Hyeonwoo Kim, Christiane D. Wrann, Mark Jedrychowski, Sara Vidoni, Yukiko Kitase, Kenichi Nagano, Chenhe Zhou, Joshua Chou, Virginia-Jeni A. Parkman, Scott J. Novick, Timothy S. Strutzenberg, Bruce D. Pascal, Phuong T. Le, Daniel J. Brooks, Alexander M. Roche, Kaitlyn K. Gerber, Laura Mattheis, Wenjing Chen, Hua Tu, Mary L. Bouxsein, Patrick R. Griffin, Roland Baron, Clifford J. Rosen, Lynda F. Bonewald, Bruce M. Spiegelman

Cell. Author manuscript; available in PMC 2019 Dec 13.

Published in final edited form as: Cell. 2018 Dec 13; 175(7): 1756–1768.e17. doi: 10.1016/j.cell.2018.10.025

Correction in:: Cell. 2019 Jul 11; 178(2): 507–508.

PMCID:: PMC6298040

Abstract Article PDF–1.2M

Select item 610991010.

Long-range function of secreted small nucleolar RNAs that direct 2′-O-methylation

Jamie M. Rimer, Jiyeon Lee, Christopher L. Holley, Robert J. Crowder, Delphine L. Chen, Phyllis I. Hanson, Daniel S. Ory, Jean E. Schaffer

J Biol Chem. 2018 Aug 24; 293(34): 13284–13296. Published online 2018 Jul 6. doi: 10.1074/jbc.RA118.003410

PMCID:: PMC6109910

Abstract Article PDF–2.8M

Select item 572400911.

Nuclear export factor 3 regulates localization of small nucleolar RNAs

Melissa W. Li, Arthur C. Sletten, Jiyeon Lee, Kelly D. Pyles, Scot J. Matkovich, Daniel S. Ory, Jean E. Schaffer

J Biol Chem. 2017 Dec 8; 292(49): 20228–20239. Published online 2017 Oct 11. doi: 10.1074/jbc.M117.818146

PMCID:: PMC5724009

Abstract Article PDF–3.0M

Select item 538122612.

Fancd2 in vivo interaction network reveals a non-canonical role in mitochondrial function

Tingting Zhang, Wei Du, Andrew F. Wilson, Satoshi H. Namekawa, Paul R. Andreassen, Amom Ruhikanta Meetei, Qishen Pang

Sci Rep. 2017; 7: 45626. Published online 2017 Apr 5. doi: 10.1038/srep45626

PMCID:: PMC5381226

Abstract Article PDF–1.4M

Select item 532570213.

Interaction of tau with the RNA-Binding Protein TIA1 Regulates tau Pathophysiology and Toxicity

Tara Vanderweyde, Daniel J. Apicco, Katherine Youmans-Kidder, Peter E.A. Ash, Casey Cook, Edroaldo Lummertz da Rocha, Karen Jansen-West, Alissa A. Frame, Allison Citro, John D. Leszyk, Pavel Ivanov, Jose F. Abisambra, Martin Steffen, Hu Li, Leonard Petrucelli, Benjamin Wolozin

Cell Rep. Author manuscript; available in PMC 2017 Feb 24.

Published in final edited form as: Cell Rep. 2016 May 17; 15(7): 1455–1466. Published online 2016 May 6. doi: 10.1016/j.celrep.2016.04.045

PMCID:: PMC5325702

Abstract Article PDF–2.1M

Select item 512769514.

Rpl13a small nucleolar RNAs regulate systemic glucose metabolism

Jiyeon Lee, Alexis N. Harris, Christopher L. Holley, Jana Mahadevan, Kelly D. Pyles, Zeno Lavagnino, David E. Scherrer, Hideji Fujiwara, Rohini Sidhu, Jessie Zhang, Stanley Ching-Cheng Huang, David W. Piston, Maria S. Remedi, Fumihiko Urano, Daniel S. Ory, Jean E. Schaffer

J Clin Invest. 2016 Dec 1; 126(12): 4616–4625. Published online 2016 Nov 7. doi: 10.1172/JCI88069

PMCID:: PMC5127695

Abstract Article PDF–1.2M

Select item 510143915.

L13a-dependent translational control in macrophages limits the pathogenesis of colitis

Darshana Poddar, Ravinder Kaur, William M Baldwin, III, Barsanjit Mazumder

Cell Mol Immunol. 2016 Nov; 13(6): 816–827. Published online 2015 Jul 13. doi: 10.1038/cmi.2015.53

PMCID:: PMC5101439

Abstract Article PDF–2.7M

Select item 455775316.

Beads-free protein immunoprecipitation for a mass spectrometry-based interactome and posttranslational modifications analysis

Michal Mikula, Tymon Rubel, Jakub Karczmarski, Malgorzata Statkiewicz, Karol Bomsztyk, Jerzy Ostrowski

Proteome Sci. 2015; 13: 23. Published online 2015 Sep 2. doi: 10.1186/s12953-015-0079-0

PMCID:: PMC4557753

Abstract Article PDF–1.5M

Select item 444565017.

Ribosome mediated specificity in Hox mRNA translation and vertebrate tissue patterning

Nadya Kondrashov, Aya Pusic, Craig R. Stumpf, Kunihiko Shimizu, Andrew C. Hsieh, Junko Ishijima, Toshihiko Shiroishi, Maria Barna

Cell. Author manuscript; available in PMC 2015 May 27.

Published in final edited form as: Cell. 2011 Apr 29; 145(3): 383–397. doi: 10.1016/j.cell.2011.03.028

PMCID:: PMC4445650

Abstract Article PDF–1.5M

Select item 407349418.

The Central Role of EED in the Orchestration of Polycomb Group Complexes

Qi Cao, Xiaoju Wang, Meng Zhao, Rendong Yang, Rohit Malik, Yuanyuan Qiao, Anton Poliakov, Anastasia K. Yocum, Yong Li, Wei Chen, Xuhong Cao, Xia Jiang, Arun Dahiya, Clair Harris, Felix Y. Feng, Sundeep Kalantry, Zhaohui S. Qin, Saravana M. Dhanasekaran, Arul M. Chinnaiyan

Nat Commun. Author manuscript; available in PMC 2014 Jul 24.

Published in final edited form as: Nat Commun. 2014; 5: 3127. doi: 10.1038/ncomms4127

PMCID:: PMC4073494

Abstract Article PDF–2.1M

Select item 395485319.

Ribosomal Protein L13a Deficiency in Macrophages Promotes Atherosclerosis by Limiting Translation Control-Dependent Retardation of Inflammation

Abhijit Basu, Darshana Poddar, Peggy Robinet, Jonathan D. Smith, Maria Febbraio, William M. Baldwin, III, Barsanjit Mazumder

Arterioscler Thromb Vasc Biol. Author manuscript; available in PMC 2015 Mar 1.

Published in final edited form as: Arterioscler Thromb Vasc Biol. 2014 Mar; 34(3): 533–542. Published online 2014 Jan 16. doi: 10.1161/ATVBAHA.113.302573

PMCID:: PMC3954853

Abstract Article PDF–2.8M

Select item 360882020.

An extra-ribosomal function of ribosomal protein L13a in macrophage resolves inflammation

Darshana Poddar, Abhijit Basu, William Baldwin, Roman V Kondratov, Sailen Barik, Barsanjit Mazumder

J Immunol. Author manuscript; available in PMC 2014 Apr 1.

Published in final edited form as: J Immunol. 2013 Apr 1; 190(7): 3600–3612. Published online 2013 Mar 4. doi: 10.4049/jimmunol.1201933

PMCID:: PMC3608820

Abstract Article PDF–3.0M

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