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Items: 1 to 20 of 26

1.
Structures of the ribosome in intermediate states of ratcheting
Wen Zhang, Jack Dunkle, Jamie H. D. Cate
Science. Author manuscript; available in PMC 2010 Aug 10.
Published in final edited form as: Science. 2009 Aug 21; 325(5943): 1014–1017. doi: 10.1126/science.1175275
PMCID:
PMC2919209
ArticlePDF–2.2M
2.
Regulation of the protein-conducting channel by a bound ribosome
James Gumbart, Leonardo G. Trabuco, Eduard Schreiner, Elizabeth Villa, Klaus Schulten
Structure. Author manuscript; available in PMC 2010 Nov 11.
Published in final edited form as: Structure. 2009 Nov 11; 17(11): 1453–1464. doi: 10.1016/j.str.2009.09.010
PMCID:
PMC2778611
ArticlePDF–3.1M
3.
Global stabilization of rRNA structure by ribosomal proteins S4, S17 and S20
Priya Ramaswamy, Sarah A. Woodson
J Mol Biol. Author manuscript; available in PMC 2010 Sep 25.
Published in final edited form as: J Mol Biol. 2009 Sep 25; 392(3): 666–677. Published online 2009 Jul 16. doi: 10.1016/j.jmb.2009.07.032
PMCID:
PMC2763185
ArticlePDF–3.4M
4.
Concurrent Nucleation of 16S Folding and Induced Fit in 30 S Ribosome Assembly
Tadepalli Adilakshmi, Deepti L. Bellur, Sarah A. Woodson
Nature. Author manuscript; available in PMC 2009 Oct 30.
Published in final edited form as: Nature. 2008 Oct 30; 455(7217): 1268–1272. Published online 2008 Sep 10. doi: 10.1038/nature07298
PMCID:
PMC2720798
ArticlePDF–1.0M
5.
The poly(A)-dependent degradation pathway of rpsO mRNA is primarily mediated by RNase R
José M. Andrade, Eliane Hajnsdorf, Philippe Régnier, Cecília M. Arraiano
RNA. 2009 Feb; 15(2): 316–326. doi: 10.1261/rna.1197309
PMCID:
PMC2648712
ArticlePDF–887K
6.
Systems based mapping demonstrates that recovery from alkylation damage requires DNA repair, RNA processing, and translation associated networks
John P. Rooney, Ajish D. George, Ashish Patil, Ulrike Begley, Erin Bessette, Maria R. Zappala, Xin Huang, Douglas A. Conklin, Richard P. Cunningham, Thomas J. Begley
Genomics. Author manuscript; available in PMC 2010 Jan 1.
Published in final edited form as: Genomics. 2009 Jan; 93(1): 42–51. Published online 2008 Oct 16. doi: 10.1016/j.ygeno.2008.09.001
PMCID:
PMC2633870
ArticlePDF–1.9M
7.
Assembly of the 5′ and the 3′ minor domains of 16S rRNA as monitored by tethered probing from ribosomal protein S20
Laura M. Dutca, Gloria M. Culver
J Mol Biol. Author manuscript; available in PMC 2009 Feb 8.
Published in final edited form as: J Mol Biol. 2008 Feb 8; 376(1): 92–108. Published online 2007 Nov 6. doi: 10.1016/j.jmb.2007.10.083
PMCID:
PMC2443948
ArticlePDF–5.5M
8.
Protein abundance profiling of the Escherichia coli cytosol
Yasushi Ishihama, Thorsten Schmidt, Juri Rappsilber, Matthias Mann, F Ulrich Hartl, Michael J Kerner, Dmitrij Frishman
BMC Genomics. 2008; 9: 102. Published online 2008 Feb 27. doi: 10.1186/1471-2164-9-102
PMCID:
PMC2292177
ArticlePDF–1.0M
9.
Essentiality of Ribosomal and Transcription Antitermination Proteins Analyzed by Systematic Gene Replacement in Escherichia coli
Mikhail Bubunenko, Teresa Baker, Donald L. Court
J Bacteriol. 2007 Apr; 189(7): 2844–2853. Published online 2007 Feb 2. doi: 10.1128/JB.01713-06
PMCID:
PMC1855809
ArticlePDF–198K
10.
Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110
Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi
Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049
PMCID:
PMC1681481
ArticlePDF–141K
11.
Assembly of the 30S ribosomal subunit: Positioning ribosomal protein S13 in the S7 assembly branch
JOEL F. GRONDEK, GLORIA M. CULVER
RNA. 2004 Dec; 10(12): 1861–1866. doi: 10.1261/rna.7130504
PMCID:
PMC1370675
ArticlePDF–310K
12.
Directed hydroxyl radical probing of 16S ribosomal RNA in ribosomes containing Fe(II) tethered to ribosomal protein S20.
G M Culver, H F Noller
RNA. 1998 Dec; 4(12): 1471–1480. doi: 10.1017/s1355838298981201
PMCID:
PMC1369718
SummaryPDF–554K
13.
Escherichia coli K-12: a cooperatively developed annotation snapshot—2005
Monica Riley, Takashi Abe, Martha B. Arnaud, Mary K.B. Berlyn, Frederick R. Blattner, Roy R. Chaudhuri, Jeremy D. Glasner, Takashi Horiuchi, Ingrid M. Keseler, Takehide Kosuge, Hirotada Mori, Nicole T. Perna, Guy Plunkett, III, Kenneth E. Rudd, Margrethe H. Serres, Gavin H. Thomas, Nicholas R. Thomson, David Wishart, Barry L. Wanner
Nucleic Acids Res. 2006; 34(1): 1–9. Published online 2006 Jan 5. doi: 10.1093/nar/gkj405
PMCID:
PMC1325200
ArticlePDF–204K
14.
A novel GTPase activated by the small subunit of ribosome
Hyouta Himeno, Kyoko Hanawa-Suetsugu, Takatsugu Kimura, Kuniaki Takagi, Wakana Sugiyama, Shinobu Shirata, Tomoyuki Mikami, Fujiko Odagiri, Yukiko Osanai, Daisuke Watanabe, Simon Goto, Liliya Kalachnyuk, Chisato Ushida, Akira Muto
Nucleic Acids Res. 2004; 32(17): 5303–5309. Published online 2004 Oct 5. doi: 10.1093/nar/gkh861
PMCID:
PMC521671
ArticlePDF–261K
15.
Studies of the Interaction of Escherichia coli YjeQ with the Ribosome In Vitro
Denis M. Daigle, Eric D. Brown
J Bacteriol. 2004 Mar; 186(5): 1381–1387. doi: 10.1128/JB.186.5.1381-1387.2004
PMCID:
PMC344419
ArticlePDF–656K
16.
Affinities of ribosomal protein S20 and C-terminal deletion mutants for 16S rRNA and S20 mRNA.
B C Donly, G A Mackie
Nucleic Acids Res. 1988 Feb 11; 16(3): 997–1010. doi: 10.1093/nar/16.3.997
PMCID:
PMC334733
ArticlePDF–1.1M
17.
Binding of Escherichia coli ribosomal proteins to 23S RNA under reconstitution conditions for the 50S subunit.
O Marquardt, H E Roth, G Wystup, K H Nierhaus
Nucleic Acids Res. 1979 Aug 10; 6(11): 3641–3650. doi: 10.1093/nar/6.11.3641
PMCID:
PMC327962
ArticlePDF–717K
18.
Systematic sequencing of the Escherichia coli genome: analysis of the 0-2.4 min region.
T Yura, H Mori, H Nagai, T Nagata, A Ishihama, N Fujita, K Isono, K Mizobuchi, A Nakata
Nucleic Acids Res. 1992 Jul 11; 20(13): 3305–3308. doi: 10.1093/nar/20.13.3305
PMCID:
PMC312481
ArticlePDF–957K
19.
Structure of the DNA distal to the gene for ribosomal protein S20 in Escherichia coli K12: presence of a strong terminator and an IS1 element.
G A Mackie
Nucleic Acids Res. 1986 Sep 11; 14(17): 6965–6981. doi: 10.1093/nar/14.17.6965
PMCID:
PMC311711
ArticlePDF–1.5M
20.
Expression of the gene for ribosomal protein S20: effects of gene dosage.
G D Parsons, G A Mackie
J Bacteriol. 1983 Apr; 154(1): 152–160. doi: 10.1128/jb.154.1.152-160.1983
PMCID:
PMC217442
ArticlePDF–1.3M

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