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Items: 20

1.
BraInMap elucidates the macromolecular connectivity landscape of mammalian brain
Reza Pourhaghighi, Peter E. A. Ash, Sadhna Phanse, Florian Goebels, Lucas Z. M. Hu, Siwei Chen, Yingying Zhang, Shayne D. Wierbowski, Samantha Boudeau, Mohamed T. Moutaoufik, Ramy H. Malty, Edyta Malolepsza, Kalliopi Tsafou, Aparna Nathan, Graham Cromar, Hongbo Guo, Ali Al Abdullatif, Daniel J. Apicco, Lindsay A. Becker, Aaron D. Gitler, Stefan M. Pulst, Ahmed Youssef, Ryan Hekman, Pierre C. Havugimana, Carl A. White, Benjamin C. Blum, Antonia Ratti, Camron D. Bryant, John Parkinson, Kasper Lage, Mohan Babu, Haiyuan Yu, Gary D. Bader, Benjamin Wolozin, Andrew Emili
Cell Syst. Author manuscript; available in PMC 2021 Apr 22.
Published in final edited form as: Cell Syst. 2020 Apr 22; 10(4): 333–350.e14. doi: 10.1016/j.cels.2020.03.003
Correction in:
Cell Syst. 2020 Aug 26; 11(2): 208.
PMCID:
PMC7938770
AbstractArticlePDF–2.0M
2.
BioID screening of biotinylation sites using the avidin-like protein Tamavidin 2-REV identifies global interactors of stimulator of interferon genes (STING)
Kou Motani, Hidetaka Kosako
J Biol Chem. 2020 Aug 7; 295(32): 11174–11183. Published online 2020 Jun 17. doi: 10.1074/jbc.RA120.014323
PMCID:
PMC7415991
AbstractArticlePDF–2.0M
3.
An Hsp20-FBXO4 Axis Regulates Adipocyte Function through Modulating PPARγ Ubiquitination
Jiangtong Peng, Yutian Li, Xiaohong Wang, Shan Deng, Jenna Holland, Emily Yates, Jing Chen, Haitao Gu, Kobina Essandoh, Xingjiang Mu, Boyu Wang, Robert K. McNamara, Tianqing Peng, Anil G. Jegga, Tiemin Liu, Takahisa Nakamura, Kai Huang, Diego Perez Tilve, Guo-Chang Fan
Cell Rep. Author manuscript; available in PMC 2018 Aug 14.
Published in final edited form as: Cell Rep. 2018 Jun 19; 23(12): 3607–3620. doi: 10.1016/j.celrep.2018.05.065
PMCID:
PMC6091893
AbstractArticlePDF–1.5M
4.
Fbxo4-mediated degradation of Fxr1 suppresses tumorigenesis in head and neck squamous cell carcinoma
Shuo Qie, Mrinmoyee Majumder, Katarzyna Mackiewicz, Breege V. Howley, Yuri K. Peterson, Philip H. Howe, Viswanathan Palanisamy, J. Alan Diehl
Nat Commun. 2017; 8: 1534. Published online 2017 Nov 16. doi: 10.1038/s41467-017-01199-8
PMCID:
PMC5688124
AbstractArticlePDF–4.1M
5.
PERK Is a Haploinsufficient Tumor Suppressor: Gene Dose Determines Tumor-Suppressive Versus Tumor Promoting Properties of PERK in Melanoma
Dariusz Pytel, Yan Gao, Katarzyna Mackiewicz, Yuliya V. Katlinskaya, Kirk A. Staschke, Maria C. G. Paredes, Akihiro Yoshida, Shuo Qie, Gao Zhang, Olga S. Chajewski, Lawrence Wu, Ireneusz Majsterek, Meenhard Herlyn, Serge Y. Fuchs, J. Alan Diehl
PLoS Genet. 2016 Dec; 12(12): e1006518. Published online 2016 Dec 15. doi: 10.1371/journal.pgen.1006518
PMCID:
PMC5207760
AbstractArticlePDF–2.7M
6.
FBXO4 loss facilitates carcinogen induced papilloma development in mice
Zhaorui Lian, Eric K Lee, Adam J Bass, Kwok K Wong, Andres JP Klein-Szanto, Anil K Rustgi, J Alan Diehl
Cancer Biol Ther. 2015 May; 16(5): 750–755. Published online 2015 Mar 24. doi: 10.1080/15384047.2015.1026512
PMCID:
PMC4622573
AbstractArticlePDF–538K
7.
The FBXO4 Tumor Suppressor Functions as a Barrier to BrafV600E-Dependent Metastatic Melanoma
Eric K. Lee, Zhaorui Lian, Kurt D'Andrea, Richard Letrero, WeiQi Sheng, Shujing Liu, J. Nathaniel Diehl, Dariusz Pytel, Olena Barbash, Lynn Schuchter, Ravi Amaravaradi, Xiaowei Xu, Meenhard Herlyn, Katherine L. Nathanson, J. Alan Diehl
Mol Cell Biol. 2013 Nov; 33(22): 4422–4433. doi: 10.1128/MCB.00706-13
PMCID:
PMC3838190
AbstractArticlePDF–1.9M
8.
A conditional knockout resource for the genome–wide study of mouse gene function
William C. Skarnes, Barry Rosen, Anthony P. West, Manousos Koutsourakis, Wendy Bushell, Vivek Iyer, Alejandro O. Mujica, Mark Thomas, Jennifer Harrow, Tony Cox, David Jackson, Jessica Severin, Patrick Biggs, Jun Fu, Michael Nefedov, Pieter J. de Jong, A. Francis Stewart, Allan Bradley
Nature. Author manuscript; available in PMC 2013 Feb 14.
Published in final edited form as: Nature. 2011 Jun 15; 474(7351): 337–342. Published online 2011 Jun 15. doi: 10.1038/nature10163
PMCID:
PMC3572410
AbstractArticlePDF–1.1M
9.
Genetic Reevaluation of the Role of F-Box Proteins in Cyclin D1 Degradation
Tomoharu Kanie, Ichiro Onoyama, Akinobu Matsumoto, Masanori Yamada, Hirokazu Nakatsumi, Yuki Tateishi, So Yamamura, Ryosuke Tsunematsu, Masaki Matsumoto, Keiichi I. Nakayama
Mol Cell Biol. 2012 Feb; 32(3): 590–605. doi: 10.1128/MCB.06570-11
PMCID:
PMC3266600
AbstractArticlePDF–2.6M
10.
The Fbx4 Tumor Suppressor Regulates Cyclin D1 Accumulation and Prevents Neoplastic Transformation
Laura Pontano Vaites, Eric K. Lee, Zhaorui Lian, Olena Barbash, Darshan Roy, Mariusz Wasik, Andres J. P. Klein-Szanto, Anil K. Rustgi, J. Alan Diehl
Mol Cell Biol. 2011 Nov; 31(22): 4513–4523. doi: 10.1128/MCB.05733-11
PMCID:
PMC3209253
AbstractArticlePDF–1.7M
11.
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas
Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042
PMCID:
PMC3178059
AbstractArticlePDF–1.0M
12.
Phosphorylation-dependent regulation of SCFFbx4 dimerization and activity involves a novel component, 14-3-3e
Olena Barbash, Eric K. Lee, J Alan Diehl
Oncogene. Author manuscript; available in PMC 2011 Oct 28.
Published in final edited form as: Oncogene. 2011 Apr 28; 30(17): 1995–2002. Published online 2011 Jan 17. doi: 10.1038/onc.2010.584
PMCID:
PMC3084329
AbstractArticlePDF–1.2M
13.
A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo
Graciana Diez-Roux, Sandro Banfi, Marc Sultan, Lars Geffers, Santosh Anand, David Rozado, Alon Magen, Elena Canidio, Massimiliano Pagani, Ivana Peluso, Nathalie Lin-Marq, Muriel Koch, Marchesa Bilio, Immacolata Cantiello, Roberta Verde, Cristian De Masi, Salvatore A. Bianchi, Juliette Cicchini, Elodie Perroud, Shprese Mehmeti, Emilie Dagand, Sabine Schrinner, Asja Nürnberger, Katja Schmidt, Katja Metz, Christina Zwingmann, Norbert Brieske, Cindy Springer, Ana Martinez Hernandez, Sarah Herzog, Frauke Grabbe, Cornelia Sieverding, Barbara Fischer, Kathrin Schrader, Maren Brockmeyer, Sarah Dettmer, Christin Helbig, Violaine Alunni, Marie-Annick Battaini, Carole Mura, Charlotte N. Henrichsen, Raquel Garcia-Lopez, Diego Echevarria, Eduardo Puelles, Elena Garcia-Calero, Stefan Kruse, Markus Uhr, Christine Kauck, Guangjie Feng, Nestor Milyaev, Chuang Kee Ong, Lalit Kumar, MeiSze Lam, Colin A. Semple, Attila Gyenesei, Stefan Mundlos, Uwe Radelof, Hans Lehrach, Paolo Sarmientos, Alexandre Reymond, Duncan R. Davidson, Pascal Dollé, Stylianos E. Antonarakis, Marie-Laure Yaspo, Salvador Martinez, Richard A. Baldock, Gregor Eichele, Andrea Ballabio
PLoS Biol. 2011 Jan; 9(1): e1000582. Published online 2011 Jan 18. doi: 10.1371/journal.pbio.1000582
PMCID:
PMC3022534
AbstractArticlePDF–3.8M
14.
Lysine 269 is essential for cyclin D1 ubiquitylation by the SCFFbx4/aB-crystallin ligase and subsequent proteasome-dependent degradation
Barbash O., Egan E., Pontano L.L., Kosak J., J. Alan Diehl
Oncogene. Author manuscript; available in PMC 2010 Jun 10.
Published in final edited form as: Oncogene. 2009 Dec 10; 28(49): 4317–4325. doi: 10.1038/onc.2009.287
PMCID:
PMC2794935
AbstractArticlePDF–636K
15.
Phosphorylation-dependent ubiquitination of cyclin D1 by the SCFFBX4-αBcrystallin complex
Douglas I. Lin, Olena Barbash, K.G. Suresh Kumar, Jason D. Weber, J. Wade Harper, Andres J. P. Klein-Szanto, Anil Rustgi, Serge Y. Fuchs, J. Alan Diehl
Mol Cell. Author manuscript; available in PMC 2007 Nov 3.
Published in final edited form as: Mol Cell. 2006 Nov 3; 24(3): 355–366. doi: 10.1016/j.molcel.2006.09.007
PMCID:
PMC1702390
AbstractArticlePDF–806K
16.
The Status, Quality, and Expansion of the NIH Full-Length cDNA Project: The Mammalian Gene Collection (MGC)
Genome Res. 2004 Oct; 14(10b): 2121–2127. doi: 10.1101/gr.2596504
Correction in:
Genome Res. 2006 Jun; 16(6): 804.
PMCID:
PMC528928
AbstractArticlePDF–140K
17.
Systematic analysis and nomenclature of mammalian F-box proteins
Jianping Jin, Timothy Cardozo, Ruth C. Lovering, Stephen J. Elledge, Michele Pagano, J. Wade Harper
Genes Dev. 2004 Nov 1; 18(21): 2573–2580. doi: 10.1101/gad.1255304
PMCID:
PMC525538
ArticlePDF–290K
18.
RIKEN Integrated Sequence Analysis (RISA) System—384-Format Sequencing Pipeline with 384 Multicapillary Sequencer
Kazuhiro Shibata, Masayoshi Itoh, Katsunori Aizawa, Sumiharu Nagaoka, Nobuya Sasaki, Piero Carninci, Hideaki Konno, Junichi Akiyama, Katsuo Nishi, Tokuji Kitsunai, Hideo Tashiro, Mari Itoh, Noriko Sumi, Yoshiyuki Ishii, Shin Nakamura, Makoto Hazama, Tsutomu Nishine, Akira Harada, Rintaro Yamamoto, Hiroyuki Matsumoto, Sumito Sakaguchi, Takashi Ikegami, Katsuya Kashiwagi, Syuji Fujiwake, Kouji Inoue, Yoshiyuki Togawa, Masaki Izawa, Eiji Ohara, Masanori Watahiki, Yuko Yoneda, Tomokazu Ishikawa, Kaori Ozawa, Takumi Tanaka, Shuji Matsuura, Jun Kawai, Yasushi Okazaki, Masami Muramatsu, Yorinao Inoue, Akira Kira, Yoshihide Hayashizaki
Genome Res. 2000 Nov; 10(11): 1757–1771. doi: 10.1101/gr.152600
PMCID:
PMC310992
AbstractArticlePDF–3.4M
19.
Normalization and Subtraction of Cap-Trapper-Selected cDNAs to Prepare Full-Length cDNA Libraries for Rapid Discovery of New Genes
Piero Carninci, Yuko Shibata, Norihito Hayatsu, Yuichi Sugahara, Kazuhiro Shibata, Masayoshi Itoh, Hideaki Konno, Yasushi Okazaki, Masami Muramatsu, Yoshihide Hayashizaki
Genome Res. 2000 Oct; 10(10): 1617–1630. doi: 10.1101/gr.145100
PMCID:
PMC310980
AbstractArticlePDF–1.4M
20.
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences
Mammalian Gene Collection (MGC) Program Team
Proc Natl Acad Sci U S A. 2002 Dec 24; 99(26): 16899–16903. Published online 2002 Dec 11. doi: 10.1073/pnas.242603899
PMCID:
PMC139241
AbstractArticlePDF–118K

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