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Items: 19

1.
Genetic determinants of micronucleus formation in vivo
D. J. Adams, B. Barlas, R. E. McIntyre, I. Salguero, L. van der Weyden, A. Barros, J. R. Vicente, N. Karimpour, A. Haider, M. Ranzani, G. Turner, N. A. Thompson, V. Harle, R. Olvera-León, C. D. Robles-Espinoza, A. O. Speak, N. Geisler, W. J. Weninger, S. H. Geyer, J. Hewinson, N. A. Karp, The Sanger Mouse Genetics Project, B. Fu, F. Yang, Z. Kozik, J. Choudhary, L. Yu, M. S. van Ruiten, B. D. Rowland, C. J. Lelliott, M. del Castillo Velasco-Herrera, R. Verstraten, L. Bruckner, A. G. Henssen, M. A. Rooimans, J. de Lange, T. J. Mohun, M. J. Arends, K. A. Kentistou, P. A. Coelho, Y. Zhao, H. Zecchini, J. R. B. Perry, S. P. Jackson, G. Balmus
Nature. 2024; 627(8002): 130–136. Published online 2024 Feb 14. doi: 10.1038/s41586-023-07009-0
PMCID:
PMC10917660
AbstractArticlePDF–4.8M
2.
Developmental, cellular, and behavioral phenotypes in a mouse model of congenital hypoplasia of the dentate gyrus
Amir Rattner, Chantelle E Terrillion, Claudia Jou, Tina Kleven, Shun Felix Hu, John Williams, Zhipeng Hou, Manisha Aggarwal, Susumu Mori, Gloria Shin, Loyal A Goff, Menno P Witter, Mikhail Pletnikov, André A Fenton, Jeremy Nathans
eLife. 2020; 9: e62766. Published online 2020 Oct 21. doi: 10.7554/eLife.62766
PMCID:
PMC7577738
AbstractArticlePDF–5.6M
3.
HNF4 factors control chromatin accessibility and are redundantly required for maturation of the fetal intestine
Lei Chen, Natalie H. Toke, Shirley Luo, Roshan P. Vasoya, Rohit Aita, Aditya Parthasarathy, Yu-Hwai Tsai, Jason R. Spence, Michael P. Verzi
Development. 2019 Oct 1; 146(19): dev179432. Published online 2019 Aug 6. doi: 10.1242/dev.179432
PMCID:
PMC6803367
AbstractArticle
4.
TFAM is required for maturation of the fetal and adult intestinal epithelium
Manasa Srivillibhuthur, Bailey N. Warder, Natalie H. Toke, Pooja P. Shah, Qiang Feng, Nan Gao, Edward M. Bonder, Michael P. Verzi
Dev Biol. Author manuscript; available in PMC 2019 Jul 15.
Published in final edited form as: Dev Biol. 2018 Jul 15; 439(2): 92–101. Published online 2018 Apr 22. doi: 10.1016/j.ydbio.2018.04.015
PMCID:
PMC5978755
AbstractArticlePDF–2.6M
5.
Spatiotemporal Analysis of a Glycolytic Activity Gradient Linked to Mouse Embryo Mesoderm Development
Vinay Bulusu, Nicole Prior, Marteinn T. Snaebjornsson, Andreas Kuehne, Katharina F. Sonnen, Jana Kress, Frank Stein, Carsten Schultz, Uwe Sauer, Alexander Aulehla
Dev Cell. 2017 Feb 27; 40(4): 331–341.e4. doi: 10.1016/j.devcel.2017.01.015
PMCID:
PMC5337618
AbstractArticle
6.
Transcriptional heterogeneity in the lactase gene within cell-type is linked to the epigenome
Edward Oh, Richie Jeremian, Gabriel Oh, Daniel Groot, Miki Susic, KwangHo Lee, Kelly Foy, Peter W. Laird, Arturas Petronis, Viviane Labrie
Sci Rep. 2017; 7: 41843. Published online 2017 Jan 31. doi: 10.1038/srep41843
PMCID:
PMC5282553
AbstractArticlePDF–1.9M
7.
Lactase non-persistence is directed by DNA variation-dependent epigenetic aging
Viviane Labrie, Orion J Buske, Edward Oh, Richie Jeremian, Carolyn Ptak, Giedrius Gasiunas, Almantas Maleckas, Ruta Petereit, Aida Žvirbliene, Kestutis Adamonis, Edita Kriukiene, Karolis Koncevicius, Juozas Gordevicius, Akhil Nair, Aiping Zhang, Sasha Ebrahimi, Gabriel Oh, Virginijus Šikšnys, Limas Kupcinskas, Michael Brudno, Arturas Petronis
Nat Struct Mol Biol. Author manuscript; available in PMC 2016 Nov 9.
Published in final edited form as: Nat Struct Mol Biol. 2016 Jun; 23(6): 566–573. Published online 2016 May 9. doi: 10.1038/nsmb.3227
PMCID:
PMC4899171
AbstractArticlePDF–644K
8.
GATA4 and GATA6 regulate intestinal epithelial cytodifferentiation during development
Emily M. Walker, Cayla A. Thompson, Michele A. Battle
Dev Biol. Author manuscript; available in PMC 2015 Aug 15.
Published in final edited form as: Dev Biol. 2014 Aug 15; 392(2): 283–294. Published online 2014 Jun 12. doi: 10.1016/j.ydbio.2014.05.017
PMCID:
PMC4149467
AbstractArticlePDF–2.0M
9.
Endothelin-2 deficiency causes growth retardation, hypothermia, and emphysema in mice
Inik Chang, Alexa N. Bramall, Amy Greenstein Baynash, Amir Rattner, Dinesh Rakheja, Martin Post, Stephen Joza, Colin McKerlie, Duncan J. Stewart, Roderick R. McInnes, Masashi Yanagisawa
J Clin Invest. 2013 Jun 3; 123(6): 2643–2653. Published online 2013 May 8. doi: 10.1172/JCI66735
PMCID:
PMC3668837
AbstractArticlePDF–2.1M
10.
A conditional knockout resource for the genome–wide study of mouse gene function
William C. Skarnes, Barry Rosen, Anthony P. West, Manousos Koutsourakis, Wendy Bushell, Vivek Iyer, Alejandro O. Mujica, Mark Thomas, Jennifer Harrow, Tony Cox, David Jackson, Jessica Severin, Patrick Biggs, Jun Fu, Michael Nefedov, Pieter J. de Jong, A. Francis Stewart, Allan Bradley
Nature. Author manuscript; available in PMC 2013 Feb 14.
Published in final edited form as: Nature. 2011 Jun 15; 474(7351): 337–342. Published online 2011 Jun 15. doi: 10.1038/nature10163
PMCID:
PMC3572410
AbstractArticlePDF–1.1M
11.
E-cadherin is required for intestinal morphogenesis in the mouse
Benjamin J. Bondow, Mary L. Faber, Kevin J. Wojta, Emily Walker, Michele A. Battle
Dev Biol. Author manuscript; available in PMC 2013 Nov 1.
Published in final edited form as: Dev Biol. 2012 Nov 1; 371(1): 1–12. Published online 2012 Jul 2. doi: 10.1016/j.ydbio.2012.06.005
PMCID:
PMC3455111
AbstractArticlePDF–2.3M
12.
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas
Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042
PMCID:
PMC3178059
AbstractArticlePDF–1.0M
13.
Blimp1 regulates the transition of neonatal to adult intestinal epithelium
Vanesa Muncan, Jarom Heijmans, Stephen D. Krasinski, Nikè V. Büller, Manon E. Wildenberg, Sander Meisner, Marijana Radonjic, Kelly A. Stapleton, Wout H. Lamers, Izak Biemond, Marius A. van den Bergh Weerman, Dónal O'Carroll, James C. Hardwick, Daniel W. Hommes, Gijs R. van den Brink
Nat Commun. 2011 Aug 30; 2: 452. Published online 2011 Aug 30. doi: 10.1038/ncomms1463
PMCID:
PMC3167062
AbstractArticlePDF–1.8M
14.
A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo
Graciana Diez-Roux, Sandro Banfi, Marc Sultan, Lars Geffers, Santosh Anand, David Rozado, Alon Magen, Elena Canidio, Massimiliano Pagani, Ivana Peluso, Nathalie Lin-Marq, Muriel Koch, Marchesa Bilio, Immacolata Cantiello, Roberta Verde, Cristian De Masi, Salvatore A. Bianchi, Juliette Cicchini, Elodie Perroud, Shprese Mehmeti, Emilie Dagand, Sabine Schrinner, Asja Nürnberger, Katja Schmidt, Katja Metz, Christina Zwingmann, Norbert Brieske, Cindy Springer, Ana Martinez Hernandez, Sarah Herzog, Frauke Grabbe, Cornelia Sieverding, Barbara Fischer, Kathrin Schrader, Maren Brockmeyer, Sarah Dettmer, Christin Helbig, Violaine Alunni, Marie-Annick Battaini, Carole Mura, Charlotte N. Henrichsen, Raquel Garcia-Lopez, Diego Echevarria, Eduardo Puelles, Elena Garcia-Calero, Stefan Kruse, Markus Uhr, Christine Kauck, Guangjie Feng, Nestor Milyaev, Chuang Kee Ong, Lalit Kumar, MeiSze Lam, Colin A. Semple, Attila Gyenesei, Stefan Mundlos, Uwe Radelof, Hans Lehrach, Paolo Sarmientos, Alexandre Reymond, Duncan R. Davidson, Pascal Dollé, Stylianos E. Antonarakis, Marie-Laure Yaspo, Salvador Martinez, Richard A. Baldock, Gregor Eichele, Andrea Ballabio
PLoS Biol. 2011 Jan; 9(1): e1000582. Published online 2011 Jan 18. doi: 10.1371/journal.pbio.1000582
PMCID:
PMC3022534
AbstractArticlePDF–3.8M
15.
Pinin modulates expression of an intestinal homeobox gene, Cdx2, and plays an essential role for small intestinal morphogenesis
Jeong-Hoon Joo, Timothy J. Taxter, Gustavo C. Munguba, Yong H. Kim, Kanthi Dhaduvai, Nicholas W. Dunn, William J. Degan, S. Paul Oh, Stephen P. Sugrue
Dev Biol. Author manuscript; available in PMC 2011 Sep 15.
Published in final edited form as: Dev Biol. 2010 Sep 15; 345(2): 191–203. Published online 2010 Jul 14. doi: 10.1016/j.ydbio.2010.07.009
PMCID:
PMC2949054
AbstractArticlePDF–3.4M
16.
Intestinal maturation in mice lacking CCAAT/enhancer-binding protein alpha (C/EPBalpha).
T J Oesterreicher, L L Leeper, M J Finegold, G J Darlington, S J Henning
Biochem J. 1998 Mar 15; 330(Pt 3): 1165–1171. doi: 10.1042/bj3301165
PMCID:
PMC1219257
SummaryPDF–402K
17.
RIKEN Integrated Sequence Analysis (RISA) System—384-Format Sequencing Pipeline with 384 Multicapillary Sequencer
Kazuhiro Shibata, Masayoshi Itoh, Katsunori Aizawa, Sumiharu Nagaoka, Nobuya Sasaki, Piero Carninci, Hideaki Konno, Junichi Akiyama, Katsuo Nishi, Tokuji Kitsunai, Hideo Tashiro, Mari Itoh, Noriko Sumi, Yoshiyuki Ishii, Shin Nakamura, Makoto Hazama, Tsutomu Nishine, Akira Harada, Rintaro Yamamoto, Hiroyuki Matsumoto, Sumito Sakaguchi, Takashi Ikegami, Katsuya Kashiwagi, Syuji Fujiwake, Kouji Inoue, Yoshiyuki Togawa, Masaki Izawa, Eiji Ohara, Masanori Watahiki, Yuko Yoneda, Tomokazu Ishikawa, Kaori Ozawa, Takumi Tanaka, Shuji Matsuura, Jun Kawai, Yasushi Okazaki, Masami Muramatsu, Yorinao Inoue, Akira Kira, Yoshihide Hayashizaki
Genome Res. 2000 Nov; 10(11): 1757–1771. doi: 10.1101/gr.152600
PMCID:
PMC310992
AbstractArticlePDF–3.4M
18.
Normalization and Subtraction of Cap-Trapper-Selected cDNAs to Prepare Full-Length cDNA Libraries for Rapid Discovery of New Genes
Piero Carninci, Yuko Shibata, Norihito Hayatsu, Yuichi Sugahara, Kazuhiro Shibata, Masayoshi Itoh, Hideaki Konno, Yasushi Okazaki, Masami Muramatsu, Yoshihide Hayashizaki
Genome Res. 2000 Oct; 10(10): 1617–1630. doi: 10.1101/gr.145100
PMCID:
PMC310980
AbstractArticlePDF–1.4M
19.
GenePaint.org: an atlas of gene expression patterns in the mouse embryo
Axel Visel, Christina Thaller, Gregor Eichele
Nucleic Acids Res. 2004 Jan 1; 32(Database issue): D552–D556. doi: 10.1093/nar/gkh029
PMCID:
PMC308763
AbstractArticlePDF–253K

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