PMC Links for GEO Profiles (Select 112279106) - PMC

Select item 101032621.

Tet2- and Tet3-Mediated Cytosine Hydroxymethylation in Six2 Progenitor Cells in Mice Is Critical for Nephron Progenitor Differentiation and Nephron Endowment

Xiujie Liang, Tamas Aranyi, Jianfu Zhou, Yuting Guan, Hailong Hu, Hongbo Liu, Katalin Susztak

J Am Soc Nephrol. 2023 Apr; 34(4): 572–589. Published online 2022 Dec 15. doi: 10.1681/ASN.2022040460

PMCID:: PMC10103262

Abstract Article

Select item 97127592.

Jian Zhang, Jing Chen, Yufei Lu, Yan Yang, Weize Chen, Bo Shen, Jiachang Hu, Ping Jia, Sujuan Xu, Yiqin Shi, Yichun Ning, Jialin Wang, Yi Fang, Shuan Zhao, Yang Li, Yan Dai, Xiaoyan Zhang, Meng Xiang, Yang Tian, Zhichao Liu, Nana Song, Xiaoqiang Ding

iScience. 2022 Dec 22; 25(12): 105620. Published online 2022 Nov 17. doi: 10.1016/j.isci.2022.105620

PMCID:: PMC9712759

Abstract Article PDF–11M

Select item 82856493.

Deletion of Cdh16 Ksp-cadherin leads to a developmental delay in the ability to maximally concentrate urine in mouse

R. B. Thomson, D. W. Dynia, S. Burlein, B. R. Thomson, C. J. Booth, F. Knauf, T. Wang, P. S. Aronson

Am J Physiol Renal Physiol. 2021 Jun 1; 320(6): F1106–F1122. Published online 2021 May 3. doi: 10.1152/ajprenal.00556.2020

PMCID:: PMC8285649

Abstract Article

Select item 72750404.

A negative feedback loop between JNK-associated leucine zipper protein and TGF-β1 regulates kidney fibrosis

Qi Yan, Kai Zhu, Lu Zhang, Qiang Fu, Zhaowei Chen, Shan Liu, Dou Fu, Ryota Nakazato, Katsuji Yoshioka, Bo Diao, Guohua Ding, Xiaogang Li, Huiming Wang

Commun Biol. 2020; 3: 288. Published online 2020 Jun 5. doi: 10.1038/s42003-020-1008-z

PMCID:: PMC7275040

Abstract Article PDF–14M

Select item 58759615.

Ascending Vasa Recta Are Angiopoietin/Tie2-Dependent Lymphatic-Like Vessels

Yael Kenig-Kozlovsky, Rizaldy P. Scott, Tuncer Onay, Isabel Anna Carota, Benjamin R. Thomson, Hyea Jin Gil, Veronica Ramirez, Shinji Yamaguchi, Christine E. Tanna, Stefan Heinen, Christine Wu, Radu V. Stan, Janet D. Klein, Jeff M. Sands, Guillermo Oliver, Susan E. Quaggin

J Am Soc Nephrol. 2018 Apr; 29(4): 1097–1107. Published online 2017 Dec 13. doi: 10.1681/ASN.2017090962

PMCID:: PMC5875961

Abstract Article

Select item 54171636.

An Essential Role for Pax8 in the Transcriptional Regulation of Cadherin-16 in Thyroid Cells

Tiziana de Cristofaro, Tina Di Palma, Imma Fichera, Valeria Lucci, Luca Parrillo, Mario De Felice, Mariastella Zannini

Mol Endocrinol. January 1, 2012; 26(1): 67–78. Published online 2011 Dec 1. doi: 10.1210/me.2011-1090

PMCID:: PMC5417163

Abstract Article

Select item 53829817.

Elf5 is a principal cell lineage specific transcription factor in the kidney that contributes to Aqp2 and Avpr2 gene expression

Justin Grassmeyer, Malini Mukherjee, Jennifer deRiso, Casey Hettinger, Monica Bailey, Satrajit Sinha, Jane E. Visvader, Haotian Zhao, Eric Fogarty, Kameswaran Surendran

Dev Biol. Author manuscript; available in PMC 2018 Apr 1.

Published in final edited form as: Dev Biol. 2017 Apr 1; 424(1): 77–89. Published online 2017 Feb 17. doi: 10.1016/j.ydbio.2017.02.007

PMCID:: PMC5382981

Abstract Article PDF–1.6M

Select item 45290308.

Yap and Taz are required for Ret-dependent urinary tract morphogenesis

Antoine Reginensi, Masato Hoshi, Sami Kamel Boualia, Maxime Bouchard, Sanjay Jain, Helen McNeill

Development. 2015 Aug 1; 142(15): 2696–2703. doi: 10.1242/dev.122044

PMCID:: PMC4529030

Abstract Article

Select item 35724109.

A conditional knockout resource for the genome–wide study of mouse gene function

William C. Skarnes, Barry Rosen, Anthony P. West, Manousos Koutsourakis, Wendy Bushell, Vivek Iyer, Alejandro O. Mujica, Mark Thomas, Jennifer Harrow, Tony Cox, David Jackson, Jessica Severin, Patrick Biggs, Jun Fu, Michael Nefedov, Pieter J. de Jong, A. Francis Stewart, Allan Bradley

Nature. Author manuscript; available in PMC 2013 Feb 14.

Published in final edited form as: Nature. 2011 Jun 15; 474(7351): 337–342. Published online 2011 Jun 15. doi: 10.1038/nature10163

PMCID:: PMC3572410

Abstract Article PDF–1.1M

Select item 322166910.

The microRNA-Processing Enzyme Dicer Is Essential for Thyroid Function

Daniela Frezzetti, Carla Reale, Gaetano Calì, Lucio Nitsch, Henrik Fagman, Ola Nilsson, Marzia Scarfò, Gabriella De Vita, Roberto Di Lauro

PLoS One. 2011; 6(11): e27648. Published online 2011 Nov 21. doi: 10.1371/journal.pone.0027648

PMCID:: PMC3221669

Abstract Article PDF–2.5M

Select item 317805911.

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas

Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042

PMCID:: PMC3178059

Abstract Article PDF–1.0M

Select item 305584612.

In vivo role of different domains and of phosphorylation in the transcription factor Nkx2-1

Daniel Silberschmidt, Alina Rodriguez-Mallon, Prathiba Mithboakar, Gaetano Calì, Elena Amendola, Remo Sanges, Mariastella Zannini, Marzia Scarfò, Pasquale De Luca, Lucio Nitsch, Roberto Di Lauro, Mario De Felice

BMC Dev Biol. 2011; 11: 9. Published online 2011 Feb 23. doi: 10.1186/1471-213X-11-9

Correction in:: BMC Dev Biol. 2016; 16(1): 29.

PMCID:: PMC3055846

Abstract Article PDF–22M

Select item 302253413.

A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo

Graciana Diez-Roux, Sandro Banfi, Marc Sultan, Lars Geffers, Santosh Anand, David Rozado, Alon Magen, Elena Canidio, Massimiliano Pagani, Ivana Peluso, Nathalie Lin-Marq, Muriel Koch, Marchesa Bilio, Immacolata Cantiello, Roberta Verde, Cristian De Masi, Salvatore A. Bianchi, Juliette Cicchini, Elodie Perroud, Shprese Mehmeti, Emilie Dagand, Sabine Schrinner, Asja Nürnberger, Katja Schmidt, Katja Metz, Christina Zwingmann, Norbert Brieske, Cindy Springer, Ana Martinez Hernandez, Sarah Herzog, Frauke Grabbe, Cornelia Sieverding, Barbara Fischer, Kathrin Schrader, Maren Brockmeyer, Sarah Dettmer, Christin Helbig, Violaine Alunni, Marie-Annick Battaini, Carole Mura, Charlotte N. Henrichsen, Raquel Garcia-Lopez, Diego Echevarria, Eduardo Puelles, Elena Garcia-Calero, Stefan Kruse, Markus Uhr, Christine Kauck, Guangjie Feng, Nestor Milyaev, Chuang Kee Ong, Lalit Kumar, MeiSze Lam, Colin A. Semple, Attila Gyenesei, Stefan Mundlos, Uwe Radelof, Hans Lehrach, Paolo Sarmientos, Alexandre Reymond, Duncan R. Davidson, Pascal Dollé, Stylianos E. Antonarakis, Marie-Laure Yaspo, Salvador Martinez, Richard A. Baldock, Gregor Eichele, Andrea Ballabio

PLoS Biol. 2011 Jan; 9(1): e1000582. Published online 2011 Jan 18. doi: 10.1371/journal.pbio.1000582

PMCID:: PMC3022534

Abstract Article PDF–3.8M

Select item 269252114.

Tyrosine Dephosphorylation of H2AX Modulates Apoptosis and Survival Decisions

Peter J. Cook, Bong Gun Ju, Francesca Telese, Xiangting Wang, Christopher K. Glass, Michael G. Rosenfeld

Nature. Author manuscript; available in PMC 2009 Oct 2.

Published in final edited form as: Nature. 2009 Apr 2; 458(7238): 591–596. Published online 2009 Feb 22. doi: 10.1038/nature07849

PMCID:: PMC2692521

Abstract Article PDF–1.3M

Select item 167976115.

Snail activation disrupts tissue homeostasis and induces fibrosis in the adult kidney

Agnès Boutet, Cristina A De Frutos, Patrick H Maxwell, M José Mayol, J Romero, M Angela Nieto

EMBO J. 2006 Nov 29; 25(23): 5603–5613. Published online 2006 Nov 9. doi: 10.1038/sj.emboj.7601421

PMCID:: PMC1679761

Abstract Article PDF–706K

Select item 52892816.

The Status, Quality, and Expansion of the NIH Full-Length cDNA Project: The Mammalian Gene Collection (MGC)

Genome Res. 2004 Oct; 14(10b): 2121–2127. doi: 10.1101/gr.2596504

Correction in:: Genome Res. 2006 Jun; 16(6): 804.

PMCID:: PMC528928

Abstract Article PDF–140K

Select item 31099217.

RIKEN Integrated Sequence Analysis (RISA) System—384-Format Sequencing Pipeline with 384 Multicapillary Sequencer

Kazuhiro Shibata, Masayoshi Itoh, Katsunori Aizawa, Sumiharu Nagaoka, Nobuya Sasaki, Piero Carninci, Hideaki Konno, Junichi Akiyama, Katsuo Nishi, Tokuji Kitsunai, Hideo Tashiro, Mari Itoh, Noriko Sumi, Yoshiyuki Ishii, Shin Nakamura, Makoto Hazama, Tsutomu Nishine, Akira Harada, Rintaro Yamamoto, Hiroyuki Matsumoto, Sumito Sakaguchi, Takashi Ikegami, Katsuya Kashiwagi, Syuji Fujiwake, Kouji Inoue, Yoshiyuki Togawa, Masaki Izawa, Eiji Ohara, Masanori Watahiki, Yuko Yoneda, Tomokazu Ishikawa, Kaori Ozawa, Takumi Tanaka, Shuji Matsuura, Jun Kawai, Yasushi Okazaki, Masami Muramatsu, Yorinao Inoue, Akira Kira, Yoshihide Hayashizaki

Genome Res. 2000 Nov; 10(11): 1757–1771. doi: 10.1101/gr.152600

PMCID:: PMC310992

Abstract Article PDF–3.4M

Select item 31098018.

Normalization and Subtraction of Cap-Trapper-Selected cDNAs to Prepare Full-Length cDNA Libraries for Rapid Discovery of New Genes

Piero Carninci, Yuko Shibata, Norihito Hayatsu, Yuichi Sugahara, Kazuhiro Shibata, Masayoshi Itoh, Hideaki Konno, Yasushi Okazaki, Masami Muramatsu, Yoshihide Hayashizaki

Genome Res. 2000 Oct; 10(10): 1617–1630. doi: 10.1101/gr.145100

PMCID:: PMC310980

Abstract Article PDF–1.4M

Select item 13924119.

Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences

Mammalian Gene Collection (MGC) Program Team

Proc Natl Acad Sci U S A. 2002 Dec 24; 99(26): 16899–16903. Published online 2002 Dec 11. doi: 10.1073/pnas.242603899

PMCID:: PMC139241

Abstract Article PDF–118K

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