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Select item 94815371.

WRN promotes bone development and growth by unwinding SHOX-G-quadruplexes via its helicase activity in Werner Syndrome

Yuyao Tian, Wuming Wang, Sofie Lautrup, Hui Zhao, Xiang Li, Patrick Wai Nok Law, Ngoc-Duy Dinh, Evandro Fei Fang, Hoi Hung Cheung, Wai-Yee Chan

Nat Commun. 2022; 13: 5456. Published online 2022 Sep 16. doi: 10.1038/s41467-022-33012-6

PMCID:: PMC9481537

Abstract Article PDF–15M

Select item 84106802.

Temporal single-cell transcriptomes of zebrafish spinal cord pMN progenitors reveal distinct neuronal and glial progenitor populations

Kayt Scott, Rebecca O’Rourke, Caitlin C. Winkler, Christina A. Kearns, Bruce Appel

Dev Biol. Author manuscript; available in PMC 2022 Nov 1.

Published in final edited form as: Dev Biol. 2021 Nov; 479: 37–50. Published online 2021 Jul 23. doi: 10.1016/j.ydbio.2021.07.010

PMCID:: PMC8410680

Abstract Article PDF–2.5M

Select item 81916313.

Identification and Tissue-Specific Characterization of Novel SHOX-Regulated Genes in Zebrafish Highlights SOX Family Members Among Other Genes

Sandra Hoffmann, Ralph Roeth, Sabrina Diebold, Jasmin Gogel, David Hassel, Steffen Just, Gudrun A. Rappold

Front Genet. 2021; 12: 688808. Published online 2021 May 27. doi: 10.3389/fgene.2021.688808

PMCID:: PMC8191631

Abstract Article PDF–2.8M

Select item 80767174.

Genome wide identification, phylogeny, and synteny analysis of sox gene family in common carp (Cyprinus carpio)

Imran Zafar, Rida Iftikhar, Syed Umair Ahmad, Mohd Ashraf Rather

Biotechnol Rep (Amst) 2021 Jun; 30: e00607. Published online 2021 Mar 16. doi: 10.1016/j.btre.2021.e00607

PMCID:: PMC8076717

Abstract Article PDF–6.1M

Select item 73993385.

Sox Gene Family Revealed Genetic Variations in Autotetraploid Carassius auratus

Xu Huang, Chang Wu, Kaijun Gong, Qian Chen, Qianhong Gu, Huan Qin, Chun Zhao, Tingting Yu, Li Yang, Wen Fu, Yude Wang, Qinbo Qin, Shaojun Liu

Front Genet. 2020; 11: 804. Published online 2020 Jul 28. doi: 10.3389/fgene.2020.00804

PMCID:: PMC7399338

Abstract Article PDF–6.2M

Select item 67036556.

Antagonistic Regulation of PAF1C and p-TEFb Is Required for Oligodendrocyte Differentiation

Suhyun Kim, Jun-Dae Kim, Ah-Young Chung, Hyung-Seok Kim, Young-Seop Kim, Myoung-Jin Kim, Soonil Koun, You Mie Lee, Myungchull Rhee, Hae-Chul Park, Tae-Lin Huh

J Neurosci. 2012 Jun 13; 32(24): 8201–8207. doi: 10.1523/JNEUROSCI.5344-11.2012

PMCID:: PMC6703655

Abstract Article PDF–1.9M

Select item 65751607.

Fate plasticity and reprogramming in genetically distinct populations of Danio leucophores

Victor M. Lewis, Lauren M. Saunders, Tracy A. Larson, Emily J. Bain, Samantha L. Sturiale, Dvir Gur, Sarwat Chowdhury, Jessica D. Flynn, Michael C. Allen, Dimitri D. Deheyn, Jennifer C. Lee, Julian A. Simon, Jennifer Lippincott-Schwartz, David W. Raible, David M. Parichy

Proc Natl Acad Sci U S A. 2019 Jun 11; 116(24): 11806–11811. Published online 2019 May 28. doi: 10.1073/pnas.1901021116

PMCID:: PMC6575160

Abstract Article PDF–1.4M

Select item 58863938.

Distinct interactions of Sox5 and Sox10 in fate specification of pigment cells in medaka and zebrafish

Yusuke Nagao, Hiroyuki Takada, Motohiro Miyadai, Tomoko Adachi, Ryoko Seki, Yasuhiro Kamei, Ikuyo Hara, Yoshihito Taniguchi, Kiyoshi Naruse, Masahiko Hibi, Robert N. Kelsh, Hisashi Hashimoto

PLoS Genet. 2018 Apr; 14(4): e1007260. Published online 2018 Apr 5. doi: 10.1371/journal.pgen.1007260

PMCID:: PMC5886393

Abstract Article PDF–37M

Select item 56780509.

Life-Long Neurogenic Activity of Individual Neural Stem Cells and Continuous Growth Establish an Outside-In Architecture in the Teleost Pallium

Giacomo Furlan, Valentina Cuccioli, Nelly Vuillemin, Lara Dirian, Anna Janue Muntasell, Marion Coolen, Nicolas Dray, Sébastien Bedu, Corinne Houart, Emmanuel Beaurepaire, Isabelle Foucher, Laure Bally-Cuif

Curr Biol. 2017 Nov 6; 27(21): 3288–3301.e3. doi: 10.1016/j.cub.2017.09.052

PMCID:: PMC5678050

Abstract Article

Select item 533797410.

Evolution of complexity in the zebrafish synapse proteome

Àlex Bayés, Mark O. Collins, Rita Reig-Viader, Gemma Gou, David Goulding, Abril Izquierdo, Jyoti S. Choudhary, Richard D. Emes, Seth G. N. Grant

Nat Commun. 2017; 8: 14613. Published online 2017 Mar 2. doi: 10.1038/ncomms14613

PMCID:: PMC5337974

Abstract Article PDF–2.0M

Select item 493401111.

Enhancers reside in a unique epigenetic environment during early zebrafish development

Lucas J. T. Kaaij, Michal Mokry, Meng Zhou, Michael Musheev, Geert Geeven, Adrien S. J. Melquiond, António M. de Jesus Domingues, Wouter de Laat, Christof Niehrs, Andrew D. Smith, René F. Ketting

Genome Biol. 2016; 17: 146. Published online 2016 Jul 5. doi: 10.1186/s13059-016-1013-1

PMCID:: PMC4934011

Abstract Article PDF–2.3M

Select item 487073212.

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database

Jeremy Pasquier, Cédric Cabau, Thaovi Nguyen, Elodie Jouanno, Dany Severac, Ingo Braasch, Laurent Journot, Pierre Pontarotti, Christophe Klopp, John H. Postlethwait, Yann Guiguen, Julien Bobe

BMC Genomics. 2016; 17: 368. Published online 2016 May 18. doi: 10.1186/s12864-016-2709-z

PMCID:: PMC4870732

Abstract Article PDF–1.8M

Select item 467508213.

Cartilage development requires the function of Estrogen-related receptor alpha that directly regulates sox9 expression in zebrafish

Yong-Il Kim, Joon No Lee, Sushil Bhandari, In-Koo Nam, Kyeong-Won Yoo, Se-Jin Kim, Gi-Su Oh, Hyung-Jin Kim, Hong-Seob So, Seong-Kyu Choe, Raekil Park

Sci Rep. 2015; 5: 18011. Published online 2015 Dec 10. doi: 10.1038/srep18011

PMCID:: PMC4675082

Abstract Article PDF–1.6M

Select item 463413714.

RFX transcription factors are essential for hearing in mice

Ran Elkon, Beatrice Milon, Laura Morrison, Manan Shah, Sarath Vijayakumar, Manoj Racherla, Carmen C. Leitch, Lorna Silipino, Shadan Hadi, Michèle Weiss-Gayet, Emmanuèle Barras, Christoph D. Schmid, Aouatef Ait-Lounis, Ashley Barnes, Yang Song, David J. Eisenman, Efrat Eliyahu, Gregory I. Frolenkov, Scott E. Strome, Bénédicte Durand, Norann A. Zaghloul, Sherri M. Jones, Walter Reith, Ronna Hertzano

Nat Commun. 2015; 6: 8549. Published online 2015 Oct 15. doi: 10.1038/ncomms9549

PMCID:: PMC4634137

Abstract Article PDF–5.5M

Select item 441830515.

Comprehensive Expression Map of Transcription Regulators in the Adult Zebrafish Telencephalon Reveals Distinct Neurogenic Niches

Nicolas Diotel, Rebecca Rodriguez Viales, Olivier Armant, Martin März, Marco Ferg, Sepand Rastegar, Uwe Strähle

J Comp Neurol. 2015 Jun 1; 523(8): 1202–1221. Published online 2015 Feb 19. doi: 10.1002/cne.23733

PMCID:: PMC4418305

Abstract Article PDF–1.5M

Select item 432326016.

The role of Sox6 in zebrafish muscle fiber type specification

Harriet E Jackson, Yosuke Ono, Xingang Wang, Stone Elworthy, Vincent T Cunliffe, Philip W Ingham

Skelet Muscle. 2015; 5(1): 2. Published online 2015 Jan 27. doi: 10.1186/s13395-014-0026-2

PMCID:: PMC4323260

Abstract Article PDF–7.5M

Select item 430532717.

Ewing Sarcoma Ewsa Protein Regulates Chondrogenesis of Meckel’s Cartilage through Modulation of Sox9 in Zebrafish

Chris Merkes, Timothy K. Turkalo, Nicole Wilder, Hyewon Park, Luke W. Wenger, Seth J. Lewin, Mizuki Azuma

PLoS One. 2015; 10(1): e0116627. Published online 2015 Jan 24. doi: 10.1371/journal.pone.0116627

Correction in:: PLoS One. 2015; 10(3): e0123487.

PMCID:: PMC4305327

Abstract Article PDF–6.3M

Select item 333082918.

A systematic approach to identify functional motifs within vertebrate developmental enhancers

Qiang Li, Deborah Ritter, Nan Yang, Zhiqiang Dong, Hao Li, Jeffrey H. Chuang, Su Guo

Dev Biol. Author manuscript; available in PMC 2012 Apr 20.

Published in final edited form as: Dev Biol. 2010 Jan 15; 337(2): 484–495. Published online 2009 Oct 20. doi: 10.1016/j.ydbio.2009.10.019

PMCID:: PMC3330829

Abstract Article PDF–2.4M

Select item 317805919.

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas

Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042

PMCID:: PMC3178059

Abstract Article PDF–1.0M

Select item 308087820.

Somatic Mutagenesis with a Sleeping Beauty Transposon System Leads to Solid Tumor Formation in Zebrafish

Maura McGrail, Julia M. Hatler, Xianyan Kuang, Hsin-Kai Liao, Kishore Nannapaneni, Kristin E. Noack Watt, Juli D. Uhl, David A. Largaespada, Erik Vollbrecht, Todd E. Scheetz, Adam J. Dupuy, Jesse M. Hostetter, Jeffrey J. Essner

PLoS One. 2011; 6(4): e18826. Published online 2011 Apr 21. doi: 10.1371/journal.pone.0018826