PMC Links for GEO Profiles (Select 110128839) - PMC

Select item 84942921.

Foxq2 determines blue cone identity in zebrafish

Yohey Ogawa, Tomoya Shiraki, Yoshitaka Fukada, Daisuke Kojima

Sci Adv. 2021 Oct; 7(41): eabi9784. Published online 2021 Oct 6. doi: 10.1126/sciadv.abi9784

PMCID:: PMC8494292

Select item 80456902.

A fish with no sex: gonadal and adrenal functions partition between zebrafish NR5A1 co-orthologs

Yi-Lin Yan, Tom Titus, Thomas Desvignes, Ruth BreMiller, Peter Batzel, Jason Sydes, Dylan Farnsworth, Danielle Dillon, Jeremy Wegner, Jennifer B Phillips, Judy Peirce, John Dowd, Undiagnosed Diseases Network, Charles Loren Buck, Adam Miller, Monte Westerfield, John H Postlethwait

Genetics. 2021 Feb; 217(2): iyaa030. Published online 2020 Dec 22. doi: 10.1093/genetics/iyaa030

Correction in:: Genetics. 2021 May; 218(1): iyab051.

PMCID:: PMC8045690

Abstract Article PDF–2.7M

Select item 64107923.

Six6 and Six7 coordinately regulate expression of middle-wavelength opsins in zebrafish

Yohey Ogawa, Tomoya Shiraki, Yoshimasa Asano, Akira Muto, Koichi Kawakami, Yutaka Suzuki, Daisuke Kojima, Yoshitaka Fukada

Proc Natl Acad Sci U S A. 2019 Mar 5; 116(10): 4651–4660. Published online 2019 Feb 14. doi: 10.1073/pnas.1812884116

PMCID:: PMC6410792

Abstract Article PDF–2.0M

Select item 59686324.

New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics

Henriët Springelkamp, Adriana I. Iglesias, Aniket Mishra, René Höhn, Robert Wojciechowski, Anthony P. Khawaja, Abhishek Nag, Ya Xing Wang, Jie Jin Wang, Gabriel Cuellar-Partida, Jane Gibson, Jessica N. Cooke Bailey, Eranga N. Vithana, Puya Gharahkhani, Thibaud Boutin, Wishal D. Ramdas, Tanja Zeller, Robert N. Luben, Ekaterina Yonova-Doing, Ananth C. Viswanathan, Seyhan Yazar, Angela J. Cree, Jonathan L. Haines, Jia Yu Koh, Emmanuelle Souzeau, James F. Wilson, Najaf Amin, Christian Müller, Cristina Venturini, Lisa S. Kearns, Jae Hee Kang, NEIGHBORHOOD Consortium, Yih Chung Tham, Tiger Zhou, Elisabeth M. van Leeuwen, Stefan Nickels, Paul Sanfilippo, Jiemin Liao, Herma van der Linde, Wanting Zhao, Leonieke M.E. van Koolwijk, Li Zheng, Fernando Rivadeneira, Mani Baskaran, Sven J. van der Lee, Shamira Perera, Paulus T.V.M. de Jong, Ben A. Oostra, André G. Uitterlinden, Qiao Fan, Albert Hofman, E-Shyong Tai, Johannes R. Vingerling, Xueling Sim, Roger C.W. Wolfs, Yik Ying Teo, Hans G. Lemij, Chiea Chuen Khor, Rob Willemsen, Karl J. Lackner, Tin Aung, Nomdo M. Jansonius, Grant Montgomery, Philipp S. Wild, Terri L. Young, Kathryn P. Burdon, Pirro G. Hysi, Louis R. Pasquale, Tien Yin Wong, Caroline C.W. Klaver, Alex W. Hewitt, Jost B. Jonas, Paul Mitchell, Andrew J. Lotery, Paul J. Foster, Veronique Vitart, Norbert Pfeiffer, Jamie E. Craig, David A. Mackey, Christopher J. Hammond, Janey L. Wiggs, Ching-Yu Cheng, Cornelia M. van Duijn, Stuart MacGregor

Hum Mol Genet. 2017 Jan 15; 26(2): 438–453. Published online 2017 Jan 10. doi: 10.1093/hmg/ddw399

PMCID:: PMC5968632

Abstract Article PDF–408K

Select item 48707325.

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database

Jeremy Pasquier, Cédric Cabau, Thaovi Nguyen, Elodie Jouanno, Dany Severac, Ingo Braasch, Laurent Journot, Pierre Pontarotti, Christophe Klopp, John H. Postlethwait, Yann Guiguen, Julien Bobe

BMC Genomics. 2016; 17: 368. Published online 2016 May 18. doi: 10.1186/s12864-016-2709-z

PMCID:: PMC4870732

Abstract Article PDF–1.8M

Select item 46341376.

RFX transcription factors are essential for hearing in mice

Ran Elkon, Beatrice Milon, Laura Morrison, Manan Shah, Sarath Vijayakumar, Manoj Racherla, Carmen C. Leitch, Lorna Silipino, Shadan Hadi, Michèle Weiss-Gayet, Emmanuèle Barras, Christoph D. Schmid, Aouatef Ait-Lounis, Ashley Barnes, Yang Song, David J. Eisenman, Efrat Eliyahu, Gregory I. Frolenkov, Scott E. Strome, Bénédicte Durand, Norann A. Zaghloul, Sherri M. Jones, Walter Reith, Ronna Hertzano

Nat Commun. 2015; 6: 8549. Published online 2015 Oct 15. doi: 10.1038/ncomms9549

PMCID:: PMC4634137

Abstract Article PDF–5.5M

Select item 45297687.

Excessive feedback of Cyp26a1 promotes cell non-autonomous loss of retinoic acid signaling

Ariel Rydeen, Norine Voisin, Enrico D’Aniello, Padmapriyadarshini Ravisankar, Claire-Sophie Devignes, Joshua S. Waxman

Dev Biol. Author manuscript; available in PMC 2016 Sep 1.

Published in final edited form as: Dev Biol. 2015 Sep 1; 405(1): 47–55. Published online 2015 Jun 24. doi: 10.1016/j.ydbio.2015.06.008

PMCID:: PMC4529768

Abstract Article PDF–960K

Select item 45285098.

Homeobox transcription factor Six7 governs expression of green opsin genes in zebrafish

Yohey Ogawa, Tomoya Shiraki, Daisuke Kojima, Yoshitaka Fukada

Proc Biol Sci. 2015 Aug 7; 282(1812): 20150659. doi: 10.1098/rspb.2015.0659

PMCID:: PMC4528509

Abstract Article PDF–922K

Select item 44759869.

Evolutionary comparison reveals that diverging CTCF sites are signatures of ancestral topological associating domains borders

Carlos Gómez-Marín, Juan J. Tena, Rafael D. Acemel, Macarena López-Mayorga, Silvia Naranjo, Elisa de la Calle-Mustienes, Ignacio Maeso, Leonardo Beccari, Ivy Aneas, Erika Vielmas, Paola Bovolenta, Marcelo A. Nobrega, Jaime Carvajal, José Luis Gómez-Skarmeta

Proc Natl Acad Sci U S A. 2015 Jun 16; 112(24): 7542–7547. Published online 2015 Jun 1. doi: 10.1073/pnas.1505463112

PMCID:: PMC4475986

Abstract Article PDF–1.5M

Select item 435191510.

Genome-wide, whole mount in situ analysis of transcriptional regulators in zebrafish embryos

Olivier Armant, Martin März, Rebecca Schmidt, Marco Ferg, Nicolas Diotel, Raymond Ertzer, Jan Christian Bryne, Lixin Yang, Isabelle Baader, Markus Reischl, Jessica Legradi, Ralf Mikut, Derek Stemple, Wilfred van IJcken, Antoine van der Sloot, Boris Lenhard, Uwe Strähle, Sepand Rastegar

Dev Biol. Author manuscript; available in PMC 2015 Mar 6.

Published in final edited form as: Dev Biol. 2013 Aug 15; 380(2): 351–362. Published online 2013 May 14. doi: 10.1016/j.ydbio.2013.05.006

PMCID:: PMC4351915

Abstract Article PDF–1.5M

Select item 419034811.

Genes and signaling networks regulated during zebrafish optic vesicle morphogenesis

Jun Yin, Maria E Morrissey, Lisa Shine, Ciarán Kennedy, Desmond G Higgins, Breandán N Kennedy

BMC Genomics. 2014; 15(1): 825. Published online 2014 Sep 30. doi: 10.1186/1471-2164-15-825

PMCID:: PMC4190348

Abstract Article PDF–2.3M

Select item 403860812.

Discovery and Functional Annotation of SIX6 Variants in Primary Open-Angle Glaucoma

Megan Ulmer Carnes, Yangfan P. Liu, R. Rand Allingham, Benjamin T. Whigham, Shane Havens, Melanie E. Garrett, Chunyan Qiao, NEIGHBORHOOD Consortium Investigators, Nicholas Katsanis, Janey L. Wiggs, Louis R. Pasquale, Allison Ashley-Koch, Edwin C. Oh, Michael A. Hauser

PLoS Genet. 2014 May; 10(5): e1004372. Published online 2014 May 29. doi: 10.1371/journal.pgen.1004372

PMCID:: PMC4038608

Abstract Article PDF–2.5M

Select item 317805913.

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas

Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042

PMCID:: PMC3178059

Abstract Article PDF–1.0M

Select item 13924114.

Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences

Mammalian Gene Collection (MGC) Program Team

Proc Natl Acad Sci U S A. 2002 Dec 24; 99(26): 16899–16903. Published online 2002 Dec 11. doi: 10.1073/pnas.242603899

PMCID:: PMC139241

Abstract Article PDF–118K

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