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Items: 1 to 20 of 29

1.
Diverse spinal commissural neuron populations revealed by fate mapping and molecular profiling using a novel Robo3Cre mouse
Alastair J. Tulloch, Shaun Teo, Brigett V. Carvajal, Marc Tessier-Lavigne, Alexander Jaworski
J Comp Neurol. Author manuscript; available in PMC 2020 Dec 15.
Published in final edited form as: J Comp Neurol. 2019 Dec 15; 527(18): 2948–2972. Published online 2019 Jun 14. doi: 10.1002/cne.24720
PMCID:
PMC6790177
AbstractArticlePDF–3.4M
2.
Impact of genome architecture on the functional activation and repression of Hox regulatory landscapes
Eddie Rodríguez-Carballo, Lucille Lopez-Delisle, Nayuta Yakushiji-Kaminatsui, Asier Ullate-Agote, Denis Duboule
BMC Biol. 2019; 17: 55. Published online 2019 Jul 12. doi: 10.1186/s12915-019-0677-x
PMCID:
PMC6626364
AbstractArticlePDF–1.9M
3.
The HoxD cluster is a dynamic and resilient TAD boundary controlling the segregation of antagonistic regulatory landscapes
Eddie Rodríguez-Carballo, Lucille Lopez-Delisle, Ye Zhan, Pierre J. Fabre, Leonardo Beccari, Imane El-Idrissi, Thi Hanh Nguyen Huynh, Hakan Ozadam, Job Dekker, Denis Duboule
Genes Dev. 2017 Nov 15; 31(22): 2264–2281. doi: 10.1101/gad.307769.117
PMCID:
PMC5769770
AbstractArticlePDF–14M
4.
Distal Limb Patterning Requires Modulation of cis-Regulatory Activities by HOX13
Rushikesh Sheth, Iros Barozzi, David Langlais, Marco Osterwalder, Stephen Nemec, Hanqian L. Carlson, H. Scott Stadler, Axel Visel, Jacques Drouin, Marie Kmita
Cell Rep. Author manuscript; available in PMC 2017 Nov 21.
Published in final edited form as: Cell Rep. 2016 Dec 13; 17(11): 2913–2926. doi: 10.1016/j.celrep.2016.11.039
PMCID:
PMC5697718
AbstractArticlePDF–2.2M
5.
Large scale genomic reorganization of topological domains at the HoxD locus
Pierre J. Fabre, Marion Leleu, Benjamin H. Mormann, Lucille Lopez-Delisle, Daan Noordermeer, Leonardo Beccari, Denis Duboule
Genome Biol. 2017; 18: 149. Published online 2017 Aug 7. doi: 10.1186/s13059-017-1278-z
PMCID:
PMC5547506
AbstractArticlePDF–2.8M
6.
Transcriptomic insights into the genetic basis of mammalian limb diversity
Jennifer A. Maier, Marcelo Rivas-Astroza, Jenny Deng, Anna Dowling, Paige Oboikovitz, Xiaoyi Cao, Richard R. Behringer, Chris J. Cretekos, John J. Rasweiler, IV, Sheng Zhong, Karen E. Sears
BMC Evol Biol. 2017; 17: 86. Published online 2017 Mar 23. doi: 10.1186/s12862-017-0902-6
PMCID:
PMC5364624
AbstractArticlePDF–5.5M
7.
A role for HOX13 proteins in the regulatory switch between TADs at the HoxD locus
Leonardo Beccari, Nayuta Yakushiji-Kaminatsui, Joost M. Woltering, Anamaria Necsulea, Nicolas Lonfat, Eddie Rodríguez-Carballo, Benedicte Mascrez, Shiori Yamamoto, Atsushi Kuroiwa, Denis Duboule
Genes Dev. 2016 May 15; 30(10): 1172–1186. doi: 10.1101/gad.281055.116
PMCID:
PMC4888838
AbstractArticlePDF–1.2M
8.
A high resolution spatiotemporal atlas of gene expression of the developing mouse brain
Carol L. Thompson, Lydia Ng, Vilas Menon, Salvador Martinez, Chang-Kyu Lee, Katie Glattfelder, Susan M. Sunkin, Alex Henry, Christopher Lau, Chinh Dang, Raquel Garcia-Lopez, Almudena Martinez-Ferre, Ana Pombero, John L.R. Rubenstein, Wayne B. Wakeman, John Hohmann, Nick Dee, Andrew J. Sodt, Rob Young, Kimberly Smith, Thuc-Nghi Nguyen, Jolene Kidney, Leonard Kuan, Andreas Jeromin, Ajamete Kaykas, Jeremy Miller, Damon Page, Geri Orta, Amy Bernard, Zackery Riley, Simon Smith, Paul Wohnoutka, Mike Hawrylycz, Luis Puelles, Allan R. Jones
Neuron. Author manuscript; available in PMC 2015 Jul 16.
Published in final edited form as: Neuron. 2014 Jul 16; 83(2): 309–323. Published online 2014 Jun 19. doi: 10.1016/j.neuron.2014.05.033
PMCID:
PMC4319559
AbstractArticlePDF–3.0M
9.
Functional and topological characteristics of mammalian regulatory domains
Orsolya Symmons, Veli Vural Uslu, Taro Tsujimura, Sandra Ruf, Sonya Nassari, Wibke Schwarzer, Laurence Ettwiller, François Spitz
Genome Res. 2014 Mar; 24(3): 390–400. doi: 10.1101/gr.163519.113
PMCID:
PMC3941104
AbstractArticlePDF–1.1M
10.
The AERO System: A 3D-Like Approach for Recording Gene Expression Patterns in the Whole Mouse Embryo
Hirohito Shimizu, Atsushi Kubo, Kenta Uchibe, Megumi Hashimoto, Shigetoshi Yokoyama, Shuji Takada, Kazuhiko Mitsuoka, Hiroshi Asahara
PLoS One. 2013; 8(10): e75754. Published online 2013 Oct 16. doi: 10.1371/journal.pone.0075754
PMCID:
PMC3797748
AbstractArticlePDF–564K
11.
Transgene- and locus-dependent imprinting reveals allele-specific chromosome conformations
Nicolas Lonfat, Thomas Montavon, David Jebb, Patrick Tschopp, Thi Hanh Nguyen Huynh, Jozsef Zakany, Denis Duboule
Proc Natl Acad Sci U S A. 2013 Jul 16; 110(29): 11946–11951. Published online 2013 Jul 1. doi: 10.1073/pnas.1310704110
PMCID:
PMC3718164
AbstractArticlePDF–836K
12.
A conditional knockout resource for the genome–wide study of mouse gene function
William C. Skarnes, Barry Rosen, Anthony P. West, Manousos Koutsourakis, Wendy Bushell, Vivek Iyer, Alejandro O. Mujica, Mark Thomas, Jennifer Harrow, Tony Cox, David Jackson, Jessica Severin, Patrick Biggs, Jun Fu, Michael Nefedov, Pieter J. de Jong, A. Francis Stewart, Allan Bradley
Nature. Author manuscript; available in PMC 2013 Feb 14.
Published in final edited form as: Nature. 2011 Jun 15; 474(7351): 337–342. Published online 2011 Jun 15. doi: 10.1038/nature10163
PMCID:
PMC3572410
AbstractArticlePDF–1.1M
13.
Impact of copy number variations (CNVs) on long-range gene regulation at the HoxD locus
Thomas Montavon, Laurie Thevenet, Denis Duboule
Proc Natl Acad Sci U S A. 2012 Dec 11; 109(50): 20204–20211. Published online 2012 Nov 7. doi: 10.1073/pnas.1217659109
PMCID:
PMC3528568
AbstractArticlePDF–1.4M
14.
A Genome-Wide Screen to Identify Transcription Factors Expressed in Pelvic Ganglia of the Lower Urinary Tract
Carrie B. Wiese, Sara Ireland, Nicole L. Fleming, Jing Yu, M. Todd Valerius, Kylie Georgas, Han Sheng Chiu, Jane Brennan, Jane Armstrong, Melissa H. Little, Andrew P. McMahon, E. Michelle Southard-Smith
Front Neurosci. 2012; 6: 130. Published online 2012 Sep 12. doi: 10.3389/fnins.2012.00130
PMCID:
PMC3439845
AbstractArticlePDF–1.4M
15.
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas
Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042
PMCID:
PMC3178059
AbstractArticlePDF–1.0M
16.
A Systems Approach Reveals that the Myogenesis Genome Network Is Regulated by the Transcriptional Repressor RP58
Shigetoshi Yokoyama, Yoshiaki Ito, Hiroe Ueno-Kudoh, Hirohito Shimizu, Kenta Uchibe, Sonia Albini, Kazuhiko Mitsuoka, Shigeru Miyaki, Minako Kiso, Akane Nagai, Tomohiro Hikata, Tadahiro Osada, Noritsugu Fukuda, Satoshi Yamashita, Daisuke Harada, Valeria Mezzano, Masataka Kasai, Pier Lorenzo Puri, Yoshihide Hayashizaki, Haruo Okado, Megumi Hashimoto, Hiroshi Asahara
Dev Cell. Author manuscript; available in PMC 2011 Jun 7.
Published in final edited form as: Dev Cell. 2009 Dec; 17(6): 836–848. doi: 10.1016/j.devcel.2009.10.011
PMCID:
PMC3110151
AbstractArticlePDF–2.0M
17.
Structural and Functional Differences in the Long Non-Coding RNA Hotair in Mouse and Human
Patrick Schorderet, Denis Duboule
PLoS Genet. 2011 May; 7(5): e1002071. Published online 2011 May 26. doi: 10.1371/journal.pgen.1002071
PMCID:
PMC3102750
AbstractArticlePDF–1.4M
18.
A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo
Graciana Diez-Roux, Sandro Banfi, Marc Sultan, Lars Geffers, Santosh Anand, David Rozado, Alon Magen, Elena Canidio, Massimiliano Pagani, Ivana Peluso, Nathalie Lin-Marq, Muriel Koch, Marchesa Bilio, Immacolata Cantiello, Roberta Verde, Cristian De Masi, Salvatore A. Bianchi, Juliette Cicchini, Elodie Perroud, Shprese Mehmeti, Emilie Dagand, Sabine Schrinner, Asja Nürnberger, Katja Schmidt, Katja Metz, Christina Zwingmann, Norbert Brieske, Cindy Springer, Ana Martinez Hernandez, Sarah Herzog, Frauke Grabbe, Cornelia Sieverding, Barbara Fischer, Kathrin Schrader, Maren Brockmeyer, Sarah Dettmer, Christin Helbig, Violaine Alunni, Marie-Annick Battaini, Carole Mura, Charlotte N. Henrichsen, Raquel Garcia-Lopez, Diego Echevarria, Eduardo Puelles, Elena Garcia-Calero, Stefan Kruse, Markus Uhr, Christine Kauck, Guangjie Feng, Nestor Milyaev, Chuang Kee Ong, Lalit Kumar, MeiSze Lam, Colin A. Semple, Attila Gyenesei, Stefan Mundlos, Uwe Radelof, Hans Lehrach, Paolo Sarmientos, Alexandre Reymond, Duncan R. Davidson, Pascal Dollé, Stylianos E. Antonarakis, Marie-Laure Yaspo, Salvador Martinez, Richard A. Baldock, Gregor Eichele, Andrea Ballabio
PLoS Biol. 2011 Jan; 9(1): e1000582. Published online 2011 Jan 18. doi: 10.1371/journal.pbio.1000582
PMCID:
PMC3022534
AbstractArticlePDF–3.8M
19.
Modeling Hox gene regulation in digits: reverse collinearity and the molecular origin of thumbness
Thomas Montavon, Jean-François Le Garrec, Michel Kerszberg, Denis Duboule
Genes Dev. 2008 Feb 1; 22(3): 346–359. doi: 10.1101/gad.1631708
PMCID:
PMC2216694
AbstractArticlePDF–798K
20.
Evx2-Hoxd13 Intergenic Region Restricts Enhancer Association to Hoxd13 Promoter
Takumi Yamagishi, Michiru Ozawa, Chiho Ohtsuka, Ritsuko Ohyama-Goto, Takashi Kondo
PLoS One. 2007; 2(1): e175. Published online 2007 Jan 24. doi: 10.1371/journal.pone.0000175
PMCID:
PMC1766471
AbstractArticlePDF–392K

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