PMC Links for GEO Profiles (Select 109462797) - PMC

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Items: 18

Select item 108351291.

Amino acid and protein specificity of protein fatty acylation in C. elegans

Bingsen Zhang, Yan Yu, Bennett W. Fox, Yinong Liu, Venkatesh P. Thirumalaikumar, Aleksandra Skirycz, Hening Lin, Frank C. Schroeder

Proc Natl Acad Sci U S A. 2024 Jan 30; 121(5): e2307515121. Published online 2024 Jan 22. doi: 10.1073/pnas.2307515121

PMCID:: PMC10835129

Abstract Article PDF–1.4M

Select item 106176262.

SIN-3 acts in distinct complexes to regulate the germline transcriptional program in Caenorhabditis elegans

Valerie J. Robert, Matthieu Caron, Loic Gely, Annie Adrait, Victoria Pakulska, Yohann Couté, Manon Chevalier, Christian G. Riedel, Cecile Bedet, Francesca Palladino

Development. 2023 Nov 1; 150(21): dev201755. Published online 2023 Oct 17. doi: 10.1242/dev.201755

PMCID:: PMC10617626

Abstract Article

Select item 103207663.

A transcriptional cofactor regulatory network for the C. elegans intestine

Brent B Horowitz, Shivani Nanda, Albertha J M Walhout

G3 (Bethesda) 2023 Jul; 13(7): jkad096. Published online 2023 Apr 29. doi: 10.1093/g3journal/jkad096

PMCID:: PMC10320766

Abstract Article PDF–1.9M

Select item 100865294.

CCR4‐NOT subunit CCF‐1/CNOT7 promotes transcriptional activation to multiple stress responses in Caenorhabditis elegans

Hadi Tabarraei, Brandon M. Waddell, Kelly Raymond, Sydney M. Murray, Ying Wang, Keith P. Choe, Cheng‐Wei Wu

Aging Cell. 2023 Apr; 22(4): e13795. Published online 2023 Feb 16. doi: 10.1111/acel.13795

PMCID:: PMC10086529

Abstract Article PDF–18M

Select item 93719105.

The silencing of ets-4 mRNA relies on the functional cooperation between REGE-1/Regnase-1 and RLE-1/Roquin-1

Daria Sobańska, Alicja A Komur, Agnieszka Chabowska-Kita, Julita Gumna, Pooja Kumari, Katarzyna Pachulska-Wieczorek, Rafal Ciosk

Nucleic Acids Res. 2022 Aug 12; 50(14): 8226–8239. Published online 2022 Jul 12. doi: 10.1093/nar/gkac609

PMCID:: PMC9371910

Abstract Article PDF–4.7M

Select item 84467936.

Interactome analysis of Caenorhabditis elegans synapses by TurboID-based proximity labeling

Murat Artan, Stephen Barratt, Sean M. Flynn, Farida Begum, Mark Skehel, Armel Nicolas, Mario de Bono

J Biol Chem. 2021 Sep; 297(3): 101094. Published online 2021 Aug 18. doi: 10.1016/j.jbc.2021.101094

Correction in:: J Biol Chem. 2022 Jun; 298(6): 102081.

PMCID:: PMC8446793

Abstract Article PDF–1.6M

Select item 83311837.

Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules

Patricia Giselle Cipriani, Olivia Bay, John Zinno, Michelle Gutwein, Hin Hark Gan, Vinay K Mayya, George Chung, Jia-Xuan Chen, Hala Fahs, Yu Guan, Thomas F Duchaine, Matthias Selbach, Fabio Piano, Kristin C Gunsalus

eLife. 2021; 10: e60833. Published online 2021 Jul 5. doi: 10.7554/eLife.60833

PMCID:: PMC8331183

Abstract Article PDF–8.5M

Select item 80929748.

Distinct Poly(A) nucleases have differential impact on sut-2 dependent tauopathy phenotypes.

Rebecca L. Kow, Timothy J. Strovas, Pamela J. McMillan, Ashley M. Jacobi, Mark A. Behlke, Aleen D. Saxton, Caitlin S. Latimer, C. Dirk Keene, Brian C. Kraemer

Neurobiol Dis. Author manuscript; available in PMC 2022 Jan 1.

Published in final edited form as: Neurobiol Dis. 2021 Jan; 147: 105148. Published online 2020 Oct 25. doi: 10.1016/j.nbd.2020.105148

PMCID:: PMC8092974

Abstract Article PDF–1.7M

Select item 79951769.

EPIC: Software Toolkit for Elution Profile-Based Inference of Protein Complexes

Lucas ZhongMing Hu, Florian Goebels, June H. Tan, Eric Wolf, Uros Kuzmanov, Cuihong Wan, Sadhna Phanse, Changjiang Xu, Mike Schertzberg, Andrew G. Fraser, Gary D. Bader, Andrew Emili

Nat Methods. Author manuscript; available in PMC 2021 Mar 26.

Published in final edited form as: Nat Methods. 2019 Aug; 16(8): 737–742. Published online 2019 Jul 15. doi: 10.1038/s41592-019-0461-4

PMCID:: PMC7995176

Abstract Article PDF–1.0M

Select item 684598010.

Stage-specific combinations of opposing poly(A) modifying enzymes guide gene expression during early oogenesis

Marco Nousch, Assa Yeroslaviz, Christian R Eckmann

Nucleic Acids Res. 2019 Nov 18; 47(20): 10881–10893. Published online 2019 Sep 12. doi: 10.1093/nar/gkz787

PMCID:: PMC6845980

Abstract Article PDF–4.7M

Select item 621659011.

OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes

Woojin Kim, Ryan S. Underwood, Iva Greenwald, Daniel D. Shaye

Genetics. 2018 Oct; 210(2): 445–461. Published online 2018 Aug 17. doi: 10.1534/genetics.118.301307

PMCID:: PMC6216590

Abstract Article PDF–1.4M

Select item 556080412.

LIN-41 and OMA Ribonucleoprotein Complexes Mediate a Translational Repression-to-Activation Switch Controlling Oocyte Meiotic Maturation and the Oocyte-to-Embryo Transition in Caenorhabditis elegans

Tatsuya Tsukamoto, Micah D. Gearhart, Caroline A. Spike, Gabriela Huelgas-Morales, Makaela Mews, Peter R. Boag, Traude H. Beilharz, David Greenstein

Genetics. 2017 Aug; 206(4): 2007–2039. Published online 2017 Jun 1. doi: 10.1534/genetics.117.203174

PMCID:: PMC5560804

Abstract Article PDF–3.9M

Select item 485894513.

In Vivo Interaction Proteomics in Caenorhabditis elegans Embryos Provides New Insights into P Granule Dynamics

Jia-Xuan Chen, Patricia G. Cipriani, Desirea Mecenas, Jolanta Polanowska, Fabio Piano, Kristin C. Gunsalus, Matthias Selbach

Mol Cell Proteomics. 2016 May; 15(5): 1642–1657. Published online 2016 Feb 24. doi: 10.1074/mcp.M115.053975

PMCID:: PMC4858945

Abstract Article PDF–3.1M

Select item 397373014.

Increased sensitivity and accuracy of a single-stranded DNA splint-mediated ligation assay (sPAT) reveals poly(A) tail length dynamics of developmentally regulated mRNAs

Ryuji Minasaki, David Rudel, Christian R Eckmann

RNA Biol. 2014 Feb 1; 11(2): 111–123. Published online 2014 Feb 10. doi: 10.4161/rna.27992

PMCID:: PMC3973730

Abstract Article PDF–2.4M

Select item 310207715.

OrthoList: A Compendium of C. elegans Genes with Human Orthologs

Daniel D. Shaye, Iva Greenwald

PLoS One. 2011; 6(5): e20085. Published online 2011 May 25. doi: 10.1371/journal.pone.0020085

Correction in:: PLoS One. 2014; 9(1): 10.1371/annotation/f5ffb738-a176-4a43-b0e0-249cdea45fe0.

PMCID:: PMC3102077

Abstract Article PDF–530K

Select item 266633916.

Two conserved regulatory cytoplasmic poly(A) polymerases, GLD-4 and GLD-2, regulate meiotic progression in C. elegans

Mark Schmid, Beate Küchler, Christian R. Eckmann

Genes Dev. 2009 Apr 1; 23(7): 824–836. doi: 10.1101/gad.494009

PMCID:: PMC2666339

Abstract Article PDF–1.2M

Select item 227807417.

The Caenorhabditis elegans ekl (Enhancer of ksr-1 Lethality) Genes Include Putative Components of a Germline Small RNA Pathway

Christian E. Rocheleau, Kevin Cullison, Kai Huang, Yelena Bernstein, Annina C. Spilker, Meera V. Sundaram

Genetics. 2008 Mar; 178(3): 1431–1443. doi: 10.1534/genetics.107.084608

PMCID:: PMC2278074

Abstract Article PDF–771K

Select item 117646718.

Identification and characterization of novel nicotinic receptor-associated proteins in Caenorhabditis elegans

Alexander Gottschalk, Ruta B Almedom, Thorsten Schedletzky, Scott D Anderson, John R Yates, III, William R Schafer

EMBO J. 2005 Jul 20; 24(14): 2566–2578. Published online 2005 Jun 30. doi: 10.1038/sj.emboj.7600741

PMCID:: PMC1176467

Abstract Article PDF–643K

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