PMC Links for GEO Profiles (Select 109442963) - PMC

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Items: 18

Select item 94378481.

Depletion of endogenously biotinylated carboxylases enhances the sensitivity of TurboID-mediated proximity labeling in Caenorhabditis elegans

Murat Artan, Markus Hartl, Weiqiang Chen, Mario de Bono

J Biol Chem. 2022 Sep; 298(9): 102343. Published online 2022 Aug 3. doi: 10.1016/j.jbc.2022.102343

PMCID:: PMC9437848

Abstract Article PDF–2.0M

Select item 90650842.

Functional identification of microRNA-centered complexes in C. elegans

Shilpa Hebbar, Ganesh Panzade, Ajay A. Vashisht, James A. Wohlschlegel, Isana Veksler-Lublinsky, Anna Y. Zinovyeva

Sci Rep. 2022; 12: 7133. Published online 2022 May 3. doi: 10.1038/s41598-022-10771-2

PMCID:: PMC9065084

Abstract Article PDF–2.2M

Select item 84467933.

Interactome analysis of Caenorhabditis elegans synapses by TurboID-based proximity labeling

Murat Artan, Stephen Barratt, Sean M. Flynn, Farida Begum, Mark Skehel, Armel Nicolas, Mario de Bono

J Biol Chem. 2021 Sep; 297(3): 101094. Published online 2021 Aug 18. doi: 10.1016/j.jbc.2021.101094

Correction in:: J Biol Chem. 2022 Jun; 298(6): 102081.

PMCID:: PMC8446793

Abstract Article PDF–1.6M

Select item 83311834.

Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules

Patricia Giselle Cipriani, Olivia Bay, John Zinno, Michelle Gutwein, Hin Hark Gan, Vinay K Mayya, George Chung, Jia-Xuan Chen, Hala Fahs, Yu Guan, Thomas F Duchaine, Matthias Selbach, Fabio Piano, Kristin C Gunsalus

eLife. 2021; 10: e60833. Published online 2021 Jul 5. doi: 10.7554/eLife.60833

PMCID:: PMC8331183

Abstract Article PDF–8.5M

Select item 79951765.

EPIC: Software Toolkit for Elution Profile-Based Inference of Protein Complexes

Lucas ZhongMing Hu, Florian Goebels, June H. Tan, Eric Wolf, Uros Kuzmanov, Cuihong Wan, Sadhna Phanse, Changjiang Xu, Mike Schertzberg, Andrew G. Fraser, Gary D. Bader, Andrew Emili

Nat Methods. Author manuscript; available in PMC 2021 Mar 26.

Published in final edited form as: Nat Methods. 2019 Aug; 16(8): 737–742. Published online 2019 Jul 15. doi: 10.1038/s41592-019-0461-4

PMCID:: PMC7995176

Abstract Article PDF–1.0M

Select item 68261456.

The conserved histone chaperone LIN‐53 is required for normal lifespan and maintenance of muscle integrity in Caenorhabditis elegans

Stefanie Müthel, Bora Uyar, Mei He, Anne Krause, Burcu Vitrinel, Selman Bulut, Djordje Vasiljevic, Iris Marchal, Stefan Kempa, Altuna Akalin, Baris Tursun

Aging Cell. 2019 Dec; 18(6): e13012. Published online 2019 Aug 9. doi: 10.1111/acel.13012

PMCID:: PMC6826145

Abstract Article PDF–3.0M

Select item 62165907.

OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes

Woojin Kim, Ryan S. Underwood, Iva Greenwald, Daniel D. Shaye

Genetics. 2018 Oct; 210(2): 445–461. Published online 2018 Aug 17. doi: 10.1534/genetics.118.301307

PMCID:: PMC6216590

Abstract Article PDF–1.4M

Select item 54231648.

Unbiased identification of substrates of protein tyrosine phosphatase ptp‐3 in C. elegans

Christopher J. Mitchell, Min-Sik Kim, Jun Zhong, Raja Sekhar Nirujogi, Anjun K. Bose, Akhilesh Pandey

Mol Oncol. 2016 Jun; 10(6): 910–920. Published online 2016 Mar 25. doi: 10.1016/j.molonc.2016.03.003

PMCID:: PMC5423164

Abstract Article PDF–1.0M

Select item 49373159.

Poly(A)-binding proteins are required for microRNA-mediated silencing and to promote target deadenylation in C. elegans

Mathieu N. Flamand, Edlyn Wu, Ajay Vashisht, Guillaume Jannot, Brett D. Keiper, Martin J. Simard, James Wohlschlegel, Thomas F. Duchaine

Nucleic Acids Res. 2016 Jul 8; 44(12): 5924–5935. Published online 2016 Apr 19. doi: 10.1093/nar/gkw276

PMCID:: PMC4937315

Abstract Article PDF–725K

Select item 478142410.

Mechanism and regulation of translation in C. elegans.

Robert E Rhoads, Tzvetanka D Dinkova, Nadejda L Korneeva

WormBook. 2006 : 1–18. Published online 2006 Jan 28. doi: 10.1895/wormbook.1.63.1

PMCID:: PMC4781424

Abstract Article

Select item 458683811.

Caenorhabditis elegans ALG-1 antimorphic mutations uncover functions for Argonaute in microRNA guide strand selection and passenger strand disposal

Anna Y. Zinovyeva, Isana Veksler-Lublinsky, Ajay A. Vashisht, James A. Wohlschlegel, Victor R. Ambros

Proc Natl Acad Sci U S A. 2015 Sep 22; 112(38): E5271–E5280. Published online 2015 Sep 8. doi: 10.1073/pnas.1506576112

PMCID:: PMC4586838

Abstract Article PDF–1.1M

Select item 419141212.

The cytoplasmic poly(A) polymerases GLD-2 and GLD-4 promote general gene expression via distinct mechanisms

Marco Nousch, Assa Yeroslaviz, Bianca Habermann, Christian R. Eckmann

Nucleic Acids Res. 2014 Oct 13; 42(18): 11622–11633. Published online 2014 Sep 12. doi: 10.1093/nar/gku838

PMCID:: PMC4191412

Abstract Article PDF–1.6M

Select item 384382213.

RNA-binding protein GLD-1/quaking genetically interacts with the mir-35 and the let-7 miRNA pathways in Caenorhabditis elegans

Alper Akay, Ashley Craig, Nicolas Lehrbach, Mark Larance, Ehsan Pourkarimi, Jane E. Wright, Angus Lamond, Eric Miska, Anton Gartner

Open Biol. 2013 Nov; 3(11): 130151. doi: 10.1098/rsob.130151

PMCID:: PMC3843822

Abstract Article PDF–1.1M

Select item 310207714.

OrthoList: A Compendium of C. elegans Genes with Human Orthologs

Daniel D. Shaye, Iva Greenwald

PLoS One. 2011; 6(5): e20085. Published online 2011 May 25. doi: 10.1371/journal.pone.0020085

Correction in:: PLoS One. 2014; 9(1): 10.1371/annotation/f5ffb738-a176-4a43-b0e0-249cdea45fe0.

PMCID:: PMC3102077

Abstract Article PDF–530K

Select item 268463315.

Caenorhabditis elegans Genomic Response to Soil Bacteria Predicts Environment-Specific Genetic Effects on Life History Traits

Joseph D. Coolon, Kenneth L. Jones, Timothy C. Todd, Bryanua C. Carr, Michael A. Herman

PLoS Genet. 2009 Jun; 5(6): e1000503. Published online 2009 Jun 5. doi: 10.1371/journal.pgen.1000503

PMCID:: PMC2684633

Abstract Article PDF–457K

Select item 218606016.

Systematic identification of miRISC proteins, miRNAs, and their mRNA targets in C. elegans by their interactions with GW182 family proteins AIN-1 and AIN-2

Liang Zhang, Lei Ding, Tom H. Cheung, Meng-Qiu Dong, Jun Chen, Aileen K. Sewell, Xuedong Liu, John R. Yates, III, Min Han

Mol Cell. Author manuscript; available in PMC 2008 May 30.

Published in final edited form as: Mol Cell. 2007 Nov 30; 28(4): 598–613. doi: 10.1016/j.molcel.2007.09.014

PMCID:: PMC2186060

Abstract Article PDF–2.1M

Select item 177960317.

Combinatorial RNA interference in Caenorhabditis elegans reveals that redundancy between gene duplicates can be maintained for more than 80 million years of evolution

Julia Tischler, Ben Lehner, Nansheng Chen, Andrew G Fraser

Genome Biol. 2006; 7(8): R69. Published online 2006 Aug 2. doi: 10.1186/gb-2006-7-8-r69

PMCID:: PMC1779603

Abstract Article PDF–471K

Select item 144957218.

Autosomal Genes of Autosomal/X-Linked Duplicated Gene Pairs and Germ-Line Proliferation in Caenorhabditis elegans

John Maciejowski, James Hyungsoo Ahn, Patricia Giselle Cipriani, Darrell J. Killian, Aisha L. Chaudhary, Ji Inn Lee, Roumen Voutev, Robert C. Johnsen, David L. Baillie, Kristin C. Gunsalus, David H. A. Fitch, E. Jane Albert Hubbard

Genetics. 2005 Apr; 169(4): 1997–2011. doi: 10.1534/genetics.104.040121