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Select item 107136141.

RIF1 regulates early replication timing in murine B cells

Daniel Malzl, Mihaela Peycheva, Ali Rahjouei, Stefano Gnan, Kyle N. Klein, Mariia Nazarova, Ursula E. Schoeberl, David M. Gilbert, Sara C. B. Buonomo, Michela Di Virgilio, Tobias Neumann, Rushad Pavri

Nat Commun. 2023; 14: 8049. Published online 2023 Dec 11. doi: 10.1038/s41467-023-43778-y

PMCID:: PMC10713614

Abstract Article PDF–5.7M

Select item 103662672.

Rif1 Regulates Self-Renewal and Impedes Mesendodermal Differentiation of Mouse Embryonic Stem Cells

Cheng Liu, Peng Yu, Zongna Ren, Fang Yao, Li Wang, Guang Hu, Pishun Li, Quanyi Zhao

Stem Cell Rev Rep. 2023; 19(5): 1540–1553. Published online 2023 Mar 27. doi: 10.1007/s12015-023-10525-1

PMCID:: PMC10366267

Abstract Article PDF–8.3M

Select item 90075883.

Protection of nascent DNA at stalled replication forks is mediated by phosphorylation of RIF1 intrinsically disordered region

Sandhya Balasubramanian, Matteo Andreani, Júlia Goncalves Andrade, Tannishtha Saha, Devakumar Sundaravinayagam, Javier Garzón, Wenzhu Zhang, Oliver Popp, Shin-ichiro Hiraga, Ali Rahjouei, Daniel B Rosen, Philipp Mertins, Brian T Chait, Anne D Donaldson, Michela Di Virgilio

eLife. 2022; 11: e75047. Published online 2022 Apr 13. doi: 10.7554/eLife.75047

PMCID:: PMC9007588

Abstract Article PDF–2.2M

Select item 88182034.

Elevated RIF1 participates in the epigenetic abnormalities of zygotes by regulating histone modifications on MuERV-L in obese mice

Jiliang Huang, Gaizhen Ru, Jiajia Sun, Luying Sun, Zhiling Li

Mol Med. 2022; 28: 17. Published online 2022 Feb 5. doi: 10.1186/s10020-022-00446-z

PMCID:: PMC8818203

Abstract Article PDF–7.0M

Select item 86860755.

Loss of full-length DNA replication regulator Rif1 in two-cell embryos is associated with zygotic transcriptional activation

Naoko Yoshizawa-Sugata, Satoshi Yamazaki, Kaoru Mita-Yoshida, Tomio Ono, Yasumasa Nishito, Hisao Masai

J Biol Chem. 2021 Dec; 297(6): 101367. Published online 2021 Nov 1. doi: 10.1016/j.jbc.2021.101367

PMCID:: PMC8686075

Abstract Article PDF–5.3M

Select item 81317036.

Nuclear organisation and replication timing are coupled through RIF1–PP1 interaction

Stefano Gnan, Ilya M. Flyamer, Kyle N. Klein, Eleonora Castelli, Alexander Rapp, Andreas Maiser, Naiming Chen, Patrick Weber, Elin Enervald, M. Cristina Cardoso, Wendy A. Bickmore, David M. Gilbert, Sara C. B. Buonomo

Nat Commun. 2021; 12: 2910. Published online 2021 May 18. doi: 10.1038/s41467-021-22899-2

PMCID:: PMC8131703

Abstract Article PDF–3.4M

Select item 79689257.

TWIST1 and chromatin regulatory proteins interact to guide neural crest cell differentiation

Xiaochen Fan, V Pragathi Masamsetti, Jane QJ Sun, Kasper Engholm-Keller, Pierre Osteil, Joshua Studdert, Mark E Graham, Nicolas Fossat, Patrick PL Tam

eLife. 2021; 10: e62873. Published online 2021 Feb 8. doi: 10.7554/eLife.62873

PMCID:: PMC7968925

Abstract Article PDF–4.0M

Select item 79387708.

BraInMap elucidates the macromolecular connectivity landscape of mammalian brain

Reza Pourhaghighi, Peter E. A. Ash, Sadhna Phanse, Florian Goebels, Lucas Z. M. Hu, Siwei Chen, Yingying Zhang, Shayne D. Wierbowski, Samantha Boudeau, Mohamed T. Moutaoufik, Ramy H. Malty, Edyta Malolepsza, Kalliopi Tsafou, Aparna Nathan, Graham Cromar, Hongbo Guo, Ali Al Abdullatif, Daniel J. Apicco, Lindsay A. Becker, Aaron D. Gitler, Stefan M. Pulst, Ahmed Youssef, Ryan Hekman, Pierre C. Havugimana, Carl A. White, Benjamin C. Blum, Antonia Ratti, Camron D. Bryant, John Parkinson, Kasper Lage, Mohan Babu, Haiyuan Yu, Gary D. Bader, Benjamin Wolozin, Andrew Emili

Cell Syst. Author manuscript; available in PMC 2021 Apr 22.

Published in final edited form as: Cell Syst. 2020 Apr 22; 10(4): 333–350.e14. doi: 10.1016/j.cels.2020.03.003

Correction in:: Cell Syst. 2020 Aug 26; 11(2): 208.

PMCID:: PMC7938770

Abstract Article PDF–2.0M

Select item 67253949.

Telencephalic Embryonic Subtractive Sequences: A Unique Collection of Neurodevelopmental Genes

Alessandro Bulfone, Pietro Carotenuto, Andrea Faedo, Veruska Aglio, Livia Garzia, Anna Maria Bello, Andrea Basile, Alessandra Andrè, Massimo Cocchia, Ombretta Guardiola, Andrea Ballabio, John L. R. Rubenstein, Massimo Zollo

J Neurosci. 2005 Aug 17; 25(33): 7586–7600. doi: 10.1523/JNEUROSCI.0522-05.2005

PMCID:: PMC6725394

Abstract Article PDF–682K

Select item 665049410.

RIF1 promotes replication fork protection and efficient restart to maintain genome stability

Chirantani Mukherjee, Vivek Tripathi, Eleni Maria Manolika, Anne Margriet Heijink, Giulia Ricci, Sarra Merzouk, H. Rudolf de Boer, Jeroen Demmers, Marcel A. T. M. van Vugt, Arnab Ray Chaudhuri

Nat Commun. 2019; 10: 3287. Published online 2019 Jul 23. doi: 10.1038/s41467-019-11246-1

PMCID:: PMC6650494

Abstract Article PDF–3.1M

Select item 624270811.

The Chromatin Reader ZMYND8 Regulates Igh Enhancers to Promote Immunoglobulin Class Switch Recombination

Verónica Delgado-Benito, Daniel B. Rosen, Qiao Wang, Anna Gazumyan, Joy A. Pai, Thiago Y. Oliveira, Devakumar Sundaravinayagam, Wenzhu Zhang, Matteo Andreani, Lisa Keller, Kyong-Rim Kieffer-Kwon, Aleksandra Pękowska, Seolkyoung Jung, Madlen Driesner, Roman I. Subbotin, Rafael Casellas, Brian T. Chait, Michel C. Nussenzweig, Michela Di Virgilio

Mol Cell. 2018 Nov 15; 72(4): 636–649.e8. doi: 10.1016/j.molcel.2018.08.042

PMCID:: PMC6242708

Abstract Article

Select item 607255912.

53BP1/Rif1/Shieldin counteract DSB resection through CST/Polα-dependent fill-in

Zachary Mirman, Francisca Lottersberger, Hiroyuki Takai, Tatsuya Kibe, Yi Gong, Kaori Takai, Alessandro Bianchi, Michal Zimmermann, Daniel Durocher, Titia de Lange

Nature. Author manuscript; available in PMC 2019 Jan 18.

Published in final edited form as: Nature. 2018 Aug; 560(7716): 112–116. Published online 2018 Jul 18. doi: 10.1038/s41586-018-0324-7

PMCID:: PMC6072559

Abstract Article PDF–1.8M

Select item 584614713.

Oligomer formation and G-quadruplex binding by purified murine Rif1 protein, a key organizer of higher-order chromatin architecture

Kenji Moriyama, Naoko Yoshizawa-Sugata, Hisao Masai

J Biol Chem. 2018 Mar 9; 293(10): 3607–3624. Published online 2018 Jan 18. doi: 10.1074/jbc.RA117.000446

PMCID:: PMC5846147

Abstract Article PDF–3.3M

Select item 578995814.

DNA double-strand break response factors influence end-joining features of IgH class switch and general translocation junctions

Rohit A. Panchakshari, Xuefei Zhang, Vipul Kumar, Zhou Du, Pei-Chi Wei, Jennifer Kao, Junchao Dong, Frederick W. Alt

Proc Natl Acad Sci U S A. 2018 Jan 23; 115(4): 762–767. Published online 2018 Jan 8. doi: 10.1073/pnas.1719988115

PMCID:: PMC5789958

Abstract Article PDF–1.2M

Select item 572740815.

Rif1 promotes a repressive chromatin state to safeguard against endogenous retrovirus activation

Pishun Li, Li Wang, Brian D. Bennett, Jiajia Wang, Jialun Li, Yufeng Qin, Motoki Takaku, Paul A. Wade, Jiemin Wong, Guang Hu

Nucleic Acids Res. 2017 Dec 15; 45(22): 12723–12738. Published online 2017 Oct 11. doi: 10.1093/nar/gkx884

PMCID:: PMC5727408

Abstract Article PDF–6.2M

Select item 543701816.

Mouse Rif1 is a regulatory subunit of protein phosphatase 1 (PP1)

Rasa Sukackaite, Daniela Cornacchia, Malene Ringkjøbing Jensen, Philippe J. Mas, Martin Blackledge, Elin Enervald, Guangyou Duan, Tania Auchynnikava, Maja Köhn, Darren J. Hart, Sara B. C. Buonomo

Sci Rep. 2017; 7: 2119. Published online 2017 May 18. doi: 10.1038/s41598-017-01910-1

PMCID:: PMC5437018

Abstract Article PDF–2.6M

Select item 527895117.

SCAI promotes DNA double-strand break repair in distinct chromosomal contexts

Rebecca Kring Hansen, Andreas Mund, Sara Lund Poulsen, Maria Sandoval, Karolin Klement, Katerina Tsouroula, Maxim A.X. Tollenaere, Markus Räschle, Rebeca Soria, Stefan Offermanns, Thomas Worzfeld, Robert Grosse, Dominique T. Brandt, Björn Rozell, Matthias Mann, Francesca Cole, Evi Soutoglou, Aaron A. Goodarzi, Jeremy A. Daniel, Niels Mailand, Simon Bekker-Jensen

Nat Cell Biol. Author manuscript; available in PMC 2017 Jun 1.

Published in final edited form as: Nat Cell Biol. 2016 Dec; 18(12): 1357–1366. Published online 2016 Nov 7. doi: 10.1038/ncb3436

PMCID:: PMC5278951

Abstract Article PDF–2.1M

Select item 492735118.

A Damage-Independent Role for 53BP1 that Impacts Break Order and Igh Architecture during Class Switch Recombination

Pedro P. Rocha, Ramya Raviram, Yi Fu, JungHyun Kim, Vincent M. Luo, Arafat Aljoufi, Emily Swanzey, Alessandra Pasquarella, Alessia Balestrini, Emily R. Miraldi, Richard Bonneau, John Petrini, Gunnar Schotta, Jane A. Skok

Cell Rep. Author manuscript; available in PMC 2016 Jul 7.

Published in final edited form as: Cell Rep. 2016 Jun 28; 16(1): 48–55. Published online 2016 Jun 16. doi: 10.1016/j.celrep.2016.05.073

PMCID:: PMC4927351

Abstract Article PDF–1004K

Select item 472423719.

Nuclear Architecture Organized by Rif1 Underpins the Replication-Timing Program

Rossana Foti, Stefano Gnan, Daniela Cornacchia, Vishnu Dileep, Aydan Bulut-Karslioglu, Sarah Diehl, Andreas Buness, Felix A. Klein, Wolfgang Huber, Ewan Johnstone, Remco Loos, Paul Bertone, David M. Gilbert, Thomas Manke, Thomas Jenuwein, Sara C.B. Buonomo

Mol Cell. 2016 Jan 21; 61(2): 260–273. doi: 10.1016/j.molcel.2015.12.001

PMCID:: PMC4724237

Abstract Article

Select item 472013420.

Rif1 Maintains Telomere Length Homeostasis of ESCs by Mediating Heterochromatin Silencing

Jiameng Dan, Yifei Liu, Na Liu, Maria Chiourea, Maja Okuka, Tao Wu, Xiaoying Ye, Chunlin Mou, Lei Wang, Lingling Wang, Yu Yin, Jihong Yuan, Bingfeng Zuo, Fang Wang, Zhiguo Li, Xinghua Pan, Zhinan Yin, Lingyi Chen, David L. Keefe, Sarantis Gagos, Andrew Xiao, Lin Liu

Dev Cell. Author manuscript; available in PMC 2016 Jan 20.

Published in final edited form as: Dev Cell. 2014 Apr 14; 29(1): 7–19. doi: 10.1016/j.devcel.2014.03.004

PMCID:: PMC4720134

Abstract Article PDF–927K

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