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Select item 109176601.

Genetic determinants of micronucleus formation in vivo

D. J. Adams, B. Barlas, R. E. McIntyre, I. Salguero, L. van der Weyden, A. Barros, J. R. Vicente, N. Karimpour, A. Haider, M. Ranzani, G. Turner, N. A. Thompson, V. Harle, R. Olvera-León, C. D. Robles-Espinoza, A. O. Speak, N. Geisler, W. J. Weninger, S. H. Geyer, J. Hewinson, N. A. Karp, The Sanger Mouse Genetics Project, B. Fu, F. Yang, Z. Kozik, J. Choudhary, L. Yu, M. S. van Ruiten, B. D. Rowland, C. J. Lelliott, M. del Castillo Velasco-Herrera, R. Verstraten, L. Bruckner, A. G. Henssen, M. A. Rooimans, J. de Lange, T. J. Mohun, M. J. Arends, K. A. Kentistou, P. A. Coelho, Y. Zhao, H. Zecchini, J. R. B. Perry, S. P. Jackson, G. Balmus

Nature. 2024; 627(8002): 130–136. Published online 2024 Feb 14. doi: 10.1038/s41586-023-07009-0

PMCID:: PMC10917660

Abstract Article PDF–4.8M

Select item 95794082.

DNA 6mA Demethylase ALKBH1 Orchestrates Fatty Acid Metabolism and Suppresses Diet-Induced Hepatic Steatosis

Liping Luo, Ya Liu, Paul Nizigiyimana, Mingsheng Ye, Ye Xiao, Qi Guo, Tian Su, Xianghang Luo, Yan Huang, Haiyan Zhou

Cell Mol Gastroenterol Hepatol. 2022; 14(6): 1213–1233. Published online 2022 Sep 2. doi: 10.1016/j.jcmgh.2022.08.011

PMCID:: PMC9579408

Abstract Article PDF–7.3M

Select item 88282623.

Alkbh1‐mediated DNA N6‐methyladenine modification regulates bone marrow mesenchymal stem cell fate during skeletal aging

Guang‐Ping Cai, Ya‐Lin Liu, Li‐Ping Luo, Ye Xiao, Tie‐Jian Jiang, Jian Yuan, Min Wang

Cell Prolif. 2022 Feb; 55(2): e13178. Published online 2022 Jan 11. doi: 10.1111/cpr.13178

PMCID:: PMC8828262

Abstract Article PDF–2.4M

Select item 85964874.

N(6)-methyladenine in DNA antagonizes SATB1 in early development

Zheng Li, Shuai Zhao, Raman V. Nelakanti, Kaixuan Lin, Tao P. Wu, Myles H. Alderman, III, Cheng Guo, Pengcheng Wang, Min Zhang, Wang Min, Zongliang Jiang, Yinsheng Wang, Haitao Li, Andrew Z. Xiao

Nature. Author manuscript; available in PMC 2021 Nov 17.

Published in final edited form as: Nature. 2020 Jul; 583(7817): 625–630. Published online 2020 Jul 15. doi: 10.1038/s41586-020-2500-9

PMCID:: PMC8596487

Abstract Article PDF–3.5M

Select item 82795895.

ALKBH1-demethylated DNA N⁶-methyladenine modification triggers vascular calcification via osteogenic reprogramming in chronic kidney disease

Liu Ouyang, Xiaoyan Su, Wenxin Li, Liangqiu Tang, Mengbi Zhang, Yongjun Zhu, Changming Xie, Puhua Zhang, Jie Chen, Hui Huang

J Clin Invest. 2021 Jul 15; 131(14): e146985. Published online 2021 Jul 15. doi: 10.1172/JCI146985

PMCID:: PMC8279589

Abstract Article PDF–13M

Select item 70543176.

Mammalian ALKBH1 serves as an N⁶-mA demethylase of unpairing DNA

Min Zhang, Shumin Yang, Raman Nelakanti, Wentao Zhao, Gaochao Liu, Zheng Li, Xiaohui Liu, Tao Wu, Andrew Xiao, Haitao Li

Cell Res. 2020 Mar; 30(3): 197–210. Published online 2020 Feb 12. doi: 10.1038/s41422-019-0237-5

PMCID:: PMC7054317

Abstract Article PDF–4.8M

Select item 51197737.

ALKBH1-Mediated tRNA Demethylation Regulates Translation

Fange Liu, Wesley Clark, Guanzheng Luo, Xiaoyun Wang, Ye Fu, Jiangbo Wei, Xiao Wang, Ziyang Hao, Qing Dai, Guanqun Zheng, Honghui Ma, Dali Han, Molly Evans, Arne Klungland, Tao Pan, Chuan He

Cell. Author manuscript; available in PMC 2017 Oct 20.

Published in final edited form as: Cell. 2016 Oct 20; 167(3): 816–828.e16. Published online 2016 Oct 13. doi: 10.1016/j.cell.2016.09.038

PMCID:: PMC5119773

Abstract Article PDF–1.2M

Select item 49778448.

DNA methylation on N⁶-adenine in mammalian embryonic stem cells

Tao P. Wu, Tao Wang, Matthew G. Seetin, Yongquan Lai, Shijia Zhu, Kaixuan Lin, Yifei Liu, Stephanie D. Byrum, Samuel G. Mackintosh, Mei Zhong, Alan Tackett, Guilin Wang, Lawrence S. Hon, Gang Fang, James A. Swenberg, Andrew Z. Xiao

Nature. Author manuscript; available in PMC 2016 Oct 21.

Published in final edited form as: Nature. 2016 Apr 21; 532(7599): 329–333. Published online 2016 Mar 30. doi: 10.1038/nature17640

PMCID:: PMC4977844

Abstract Article PDF–1.5M

Select item 36924559.

ALKBH1 Is Dispensable for Abasic Site Cleavage during Base Excision Repair and Class Switch Recombination

Tina A. Müller, Kefei Yu, Robert P. Hausinger, Katheryn Meek

PLoS One. 2013; 8(6): e67403. Published online 2013 Jun 25. doi: 10.1371/journal.pone.0067403

PMCID:: PMC3692455

Abstract Article PDF–967K

Select item 354638910.

ALKBH1 Is a Histone H2A Dioxygenase Involved in Neural Differentiation

Rune Ougland, David Lando, Ida Jonson, John A Dahl, Marivi Nabong Moen, Line M Nordstrand, Torbjørn Rognes, Jeannie T Lee, Arne Klungland, Tony Kouzarides, Elisabeth Larsen

Stem Cells. 2012 Dec; 30(12): 2672–2682. Published online 2012 Sep 7. doi: 10.1002/stem.1228

PMCID:: PMC3546389

Abstract Article PDF–958K

Select item 350597011.

Alkbh1 and Tzfp repress a non-repeat piRNA cluster in pachytene spermatocytes

Line M. Nordstrand, Kari Furu, Jonas Paulsen, Torbjørn Rognes, Arne Klungland

Nucleic Acids Res. 2012 Nov; 40(21): 10950–10963. Published online 2012 Sep 8. doi: 10.1093/nar/gks839

PMCID:: PMC3505970

Abstract Article PDF–675K

Select item 317805912.

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas

Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042

PMCID:: PMC3178059

Abstract Article PDF–1.0M

Select item 302253413.

A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo

Graciana Diez-Roux, Sandro Banfi, Marc Sultan, Lars Geffers, Santosh Anand, David Rozado, Alon Magen, Elena Canidio, Massimiliano Pagani, Ivana Peluso, Nathalie Lin-Marq, Muriel Koch, Marchesa Bilio, Immacolata Cantiello, Roberta Verde, Cristian De Masi, Salvatore A. Bianchi, Juliette Cicchini, Elodie Perroud, Shprese Mehmeti, Emilie Dagand, Sabine Schrinner, Asja Nürnberger, Katja Schmidt, Katja Metz, Christina Zwingmann, Norbert Brieske, Cindy Springer, Ana Martinez Hernandez, Sarah Herzog, Frauke Grabbe, Cornelia Sieverding, Barbara Fischer, Kathrin Schrader, Maren Brockmeyer, Sarah Dettmer, Christin Helbig, Violaine Alunni, Marie-Annick Battaini, Carole Mura, Charlotte N. Henrichsen, Raquel Garcia-Lopez, Diego Echevarria, Eduardo Puelles, Elena Garcia-Calero, Stefan Kruse, Markus Uhr, Christine Kauck, Guangjie Feng, Nestor Milyaev, Chuang Kee Ong, Lalit Kumar, MeiSze Lam, Colin A. Semple, Attila Gyenesei, Stefan Mundlos, Uwe Radelof, Hans Lehrach, Paolo Sarmientos, Alexandre Reymond, Duncan R. Davidson, Pascal Dollé, Stylianos E. Antonarakis, Marie-Laure Yaspo, Salvador Martinez, Richard A. Baldock, Gregor Eichele, Andrea Ballabio

PLoS Biol. 2011 Jan; 9(1): e1000582. Published online 2011 Jan 18. doi: 10.1371/journal.pbio.1000582

PMCID:: PMC3022534

Abstract Article PDF–3.8M

Select item 297221814.

Mice Lacking Alkbh1 Display Sex-Ratio Distortion and Unilateral Eye Defects

Line M. Nordstrand, Jessica Svärd, Elisabeth Larsen, Anja Nilsen, Rune Ougland, Kari Furu, Guro F. Lien, Torbjørn Rognes, Satoshi H. Namekawa, Jeannie T. Lee, Arne Klungland

PLoS One. 2010; 5(11): e13827. Published online 2010 Nov 3. doi: 10.1371/journal.pone.0013827

PMCID:: PMC2972218

Abstract Article PDF–7.0M

Select item 268034115.

Lineage-Specific Biology Revealed by a Finished Genome Assembly of the Mouse

Deanna M. Church, Leo Goodstadt, LaDeana W. Hillier, Michael C. Zody, Steve Goldstein, Xinwe She, Carol J. Bult, Richa Agarwala, Joshua L. Cherry, Michael DiCuccio, Wratko Hlavina, Yuri Kapustin, Peter Meric, Donna Maglott, Zoë Birtle, Ana C. Marques, Tina Graves, Shiguo Zhou, Brian Teague, Konstantinos Potamousis, Christopher Churas, Michael Place, Jill Herschleb, Ron Runnheim, Daniel Forrest, James Amos-Landgraf, David C. Schwartz, Ze Cheng, Kerstin Lindblad-Toh, Evan E. Eichler, Chris P. Ponting, The Mouse Genome Sequencing Consortium

PLoS Biol. 2009 May; 7(5): e1000112. Published online 2009 May 26. doi: 10.1371/journal.pbio.1000112

PMCID:: PMC2680341

Abstract Article PDF–1006K

Select item 255627016.

Large-scale gene trapping in C57BL/6N mouse embryonic stem cells

Gwenn M. Hansen, Diane C. Markesich, Michael B. Burnett, Qichao Zhu, Karen M. Dionne, Lizabeth J. Richter, Richard H. Finnell, Arthur T. Sands, Brian P. Zambrowicz, Alejandro Abuin

Genome Res. 2008 Oct; 18(10): 1670–1679. doi: 10.1101/gr.078352.108

PMCID:: PMC2556270

Abstract Article PDF–493K

Select item 31099217.

RIKEN Integrated Sequence Analysis (RISA) System—384-Format Sequencing Pipeline with 384 Multicapillary Sequencer

Kazuhiro Shibata, Masayoshi Itoh, Katsunori Aizawa, Sumiharu Nagaoka, Nobuya Sasaki, Piero Carninci, Hideaki Konno, Junichi Akiyama, Katsuo Nishi, Tokuji Kitsunai, Hideo Tashiro, Mari Itoh, Noriko Sumi, Yoshiyuki Ishii, Shin Nakamura, Makoto Hazama, Tsutomu Nishine, Akira Harada, Rintaro Yamamoto, Hiroyuki Matsumoto, Sumito Sakaguchi, Takashi Ikegami, Katsuya Kashiwagi, Syuji Fujiwake, Kouji Inoue, Yoshiyuki Togawa, Masaki Izawa, Eiji Ohara, Masanori Watahiki, Yuko Yoneda, Tomokazu Ishikawa, Kaori Ozawa, Takumi Tanaka, Shuji Matsuura, Jun Kawai, Yasushi Okazaki, Masami Muramatsu, Yorinao Inoue, Akira Kira, Yoshihide Hayashizaki

Genome Res. 2000 Nov; 10(11): 1757–1771. doi: 10.1101/gr.152600

PMCID:: PMC310992

Abstract Article PDF–3.4M

Select item 31098018.

Normalization and Subtraction of Cap-Trapper-Selected cDNAs to Prepare Full-Length cDNA Libraries for Rapid Discovery of New Genes

Piero Carninci, Yuko Shibata, Norihito Hayatsu, Yuichi Sugahara, Kazuhiro Shibata, Masayoshi Itoh, Hideaki Konno, Yasushi Okazaki, Masami Muramatsu, Yoshihide Hayashizaki

Genome Res. 2000 Oct; 10(10): 1617–1630. doi: 10.1101/gr.145100

PMCID:: PMC310980

Abstract Article PDF–1.4M

Select item 28355419.

Wnk1 kinase deficiency lowers blood pressure in mice: A gene-trap screen to identify potential targets for therapeutic intervention

Brian P. Zambrowicz, Alejandro Abuin, Ramiro Ramirez-Solis, Lizabeth J. Richter, James Piggott, Hector BeltrandelRio, Eric C. Buxton, Joel Edwards, Rick A. Finch, Carl J. Friddle, Anupma Gupta, Gwenn Hansen, Yi Hu, Wenhu Huang, Crystal Jaing, Billie Wayne Key, Jr., Peter Kipp, Buckley Kohlhauff, Zhi-Qing Ma, Diane Markesich, Robert Payne, David G. Potter, Ny Qian, Joseph Shaw, Jeff Schrick, Zheng-Zheng Shi, Mary Jean Sparks, Isaac Van Sligtenhorst, Peter Vogel, Wade Walke, Nianhua Xu, Qichao Zhu, Christophe Person, Arthur T. Sands

Proc Natl Acad Sci U S A. 2003 Nov 25; 100(24): 14109–14114. Published online 2003 Nov 10. doi: 10.1073/pnas.2336103100

Correction in:: Proc Natl Acad Sci U S A. 2004 Mar 23; 101(12): 4332.

PMCID:: PMC283554

Abstract Article PDF–481K

Select item 13924120.

Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences

Mammalian Gene Collection (MGC) Program Team

Proc Natl Acad Sci U S A. 2002 Dec 24; 99(26): 16899–16903. Published online 2002 Dec 11. doi: 10.1073/pnas.242603899

PMCID:: PMC139241

Abstract Article PDF–118K

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