PMC Links for GEO Profiles (Select 103645148) - PMC

Edward L. Huttlin, Raphael J. Bruckner, Jose Navarrete-Perea, Joe R. Cannon, Kurt Baltier, Fana Gebreab, Melanie P. Gygi, Alexandra Thornock, Gabriela Zarraga, Stanley Tam, John Szpyt, Brandon M. Gassaway, Alexandra Panov, Hannah Parzen, Sipei Fu, Arvene Golbazi, Eila Maenpaa, Keegan Stricker, Sanjukta Guha Thakurta, Tian Zhang, Ramin Rad, Joshua Pan, David P. Nusinow, Joao A. Paulo, Devin K. Schweppe, Laura Pontano Vaites, J. Wade Harper, Steven P. Gygi

Cell. Author manuscript; available in PMC 2022 May 27.

Published in final edited form as: Cell. 2021 May 27; 184(11): 3022–3040.e28. Published online 2021 May 6. doi: 10.1016/j.cell.2021.04.011

PMCID:: PMC8165030

Abstract Article PDF–2.2M

Select item 81537305.

BRD4 methylation by the methyltransferase SETD6 regulates selective transcription to control mRNA translation

Zlata Vershinin, Michal Feldman, Thilo Werner, Lital Estrella Weil, Margarita Kublanovsky, Elina Abaev-Schneiderman, Menachem Sklarz, Enid Y. N. Lam, Khawla Alasad, Sarah Picaud, Barak Rotblat, Ruth A. McAdam, Vered Chalifa-Caspi, Marcus Bantscheff, Trevor Chapman, Huw D. Lewis, Panagis Filippakopoulos, Mark A. Dawson, Paola Grandi, Rab K. Prinjha, Dan Levy

Sci Adv. 2021 May; 7(22): eabf5374. Published online 2021 May 26. doi: 10.1126/sciadv.abf5374

PMCID:: PMC8153730

Abstract Article PDF–5.4M

Select item 69616896.

Lysine methyltransferase SETD6 modifies histones on a glycine-lysine motif

Olivier Binda

Epigenetics. 2020; 15(1-2): 26–31. Published online 2019 Aug 1. doi: 10.1080/15592294.2019.1649529

PMCID:: PMC6961689

Abstract Article PDF–1.4M

Select item 63477007.

The methyltransferase SETD6 regulates Mitotic progression through PLK1 methylation

Michal Feldman, Zlata Vershinin, Inna Goliand, Natalie Elia, Dan Levy

Proc Natl Acad Sci U S A. 2019 Jan 22; 116(4): 1235–1240. Published online 2019 Jan 8. doi: 10.1073/pnas.1804407116

PMCID:: PMC6347700

Abstract Article PDF–1.2M

Select item 53624718.

SETD6 regulates NF-κB signaling in urothelial cell survival: Implications for bladder cancer

Neelam Mukherjee, Eduardo Cardenas, Roble Bedolla, Rita Ghosh

Oncotarget. 2017 Feb 28; 8(9): 15114–15125. Published online 2017 Jan 19. doi: 10.18632/oncotarget.14750

PMCID:: PMC5362471

Abstract Article PDF–9.0M

Select item 48072679.

PAK4 Methylation by SETD6 Promotes the Activation of the Wnt/β-Catenin Pathway

Zlata Vershinin, Michal Feldman, Ayelet Chen, Dan Levy

J Biol Chem. 2016 Mar 25; 291(13): 6786–6795. Published online 2016 Feb 3. doi: 10.1074/jbc.M115.697292

PMCID:: PMC4807267

Abstract Article PDF–1.3M

Select item 414340910.

SETD6 controls the expression of estrogen-responsive genes and proliferation of breast carcinoma cells

Daniel J O'Neill, Stuart Charles Williamson, Dhuha Alkharaif, Isabella Christina Mazzaro Monteiro, Marilyn Goudreault, Luke Gaughan, Craig N Robson, Anne-Claude Gingras, Olivier Binda

Epigenetics. 2014 Jul 1; 9(7): 942–950. Published online 2014 Apr 21. doi: 10.4161/epi.28864

PMCID:: PMC4143409

Abstract Article PDF–1.7M

Select item 361021411.

A human skeletal muscle interactome centered on proteins involved in muscular dystrophies: LGMD interactome

Gaëlle Blandin, Sylvie Marchand, Karine Charton, Nathalie Danièle, Evelyne Gicquel, Jean-Baptiste Boucheteil, Azéddine Bentaib, Laetitia Barrault, Daniel Stockholm, Marc Bartoli, Isabelle Richard

Skelet Muscle. 2013; 3: 3. Published online 2013 Feb 15. doi: 10.1186/2044-5040-3-3

PMCID:: PMC3610214

Abstract Article PDF–1.7M

Select item 359290312.

SETD6 monomethylates H2AZ on lysine 7 and is required for the maintenance of embryonic stem cell self-renewal

Olivier Binda, Ana Sevilla, Gary LeRoy, Ihor R. Lemischka, Benjamin A. Garcia, Stéphane Richard

Epigenetics. 2013 Feb 1; 8(2): 177–183. doi: 10.4161/epi.23416

PMCID:: PMC3592903

Abstract Article PDF–3.7M

Select item 321290513.

A proteomic approach for the identification of novel lysine methyltransferase substrates

Dan Levy, Chih Long Liu, Ze Yang, Aaron M Newman, Ash A Alizadeh, Paul J Utz, Or Gozani

Epigenetics Chromatin. 2011; 4: 19. Published online 2011 Oct 24. doi: 10.1186/1756-8935-4-19

PMCID:: PMC3212905

Abstract Article PDF–1.5M

Select item 317805914.

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas

Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042

PMCID:: PMC3178059

Abstract Article PDF–1.0M

Select item 315944715.

Structural basis of SETD6-mediated regulation of the NF-kB network via methyl-lysine signaling

Yanqi Chang, Dan Levy, John R. Horton, Junmin Peng, Xing Zhang, Or Gozani, Xiaodong Cheng

Nucleic Acids Res. 2011 Aug; 39(15): 6380–6389. Published online 2011 Apr 22. doi: 10.1093/nar/gkr256

PMCID:: PMC3159447

Abstract Article PDF–12M

Select item 307420616.

SETD6 lysine methylation of RelA couples GLP activity at chromatin to tonic repression of NF-?B signaling

Dan Levy, Alex J. Kuo, Yanqi Chang, Uwe Schaefer, Christopher Kitson, Peggie Cheung, Alexsandra Espejo, Barry M. Zee, Chih Long Liu, Stephanie Tangsombatvisit, Ruth I. Tennen, Andrew Y. Kuo, Song Tanjing, Regina Cheung, Katrin F. Chua, Paul J. Utz, Xiaobing Shi, Rab K. Prinjha, Kevin Lee, Benjamin A. Garcia, Mark T. Bedford, Alexander Tarakhovsky, Xiaodong Cheng, Or Gozani

Nat Immunol. Author manuscript; available in PMC 2011 Jul 1.

Published in final edited form as: Nat Immunol. 2011 Jan; 12(1): 29–36. Published online 2010 Dec 5. doi: 10.1038/ni.1968

PMCID:: PMC3074206

Abstract Article PDF–1.2M

Select item 268887717.

The transcriptome of human CD34⁺ hematopoietic stem-progenitor cells

Yeong C. Kim, Qingfa Wu, Jun Chen, Zhenyu Xuan, Yong-Chul Jung, Michael Q. Zhang, Janet D. Rowley, San Ming Wang

Proc Natl Acad Sci U S A. 2009 May 19; 106(20): 8278–8283. Published online 2009 Apr 30. doi: 10.1073/pnas.0903390106

PMCID:: PMC2688877

Abstract Article PDF–737K

Select item 135612918.

Diversification of transcriptional modulation: Large-scale identification and characterization of putative alternative promoters of human genes

Kouichi Kimura, Ai Wakamatsu, Yutaka Suzuki, Toshio Ota, Tetsuo Nishikawa, Riu Yamashita, Jun-ichi Yamamoto, Mitsuo Sekine, Katsuki Tsuritani, Hiroyuki Wakaguri, Shizuko Ishii, Tomoyasu Sugiyama, Kaoru Saito, Yuko Isono, Ryotaro Irie, Norihiro Kushida, Takahiro Yoneyama, Rie Otsuka, Katsuhiro Kanda, Takahide Yokoi, Hiroshi Kondo, Masako Wagatsuma, Katsuji Murakawa, Shinichi Ishida, Tadashi Ishibashi, Asako Takahashi-Fujii, Tomoo Tanase, Keiichi Nagai, Hisashi Kikuchi, Kenta Nakai, Takao Isogai, Sumio Sugano

Genome Res. 2006 Jan; 16(1): 55–65. doi: 10.1101/gr.4039406

PMCID:: PMC1356129

Abstract Article PDF–438K

Select item 52892819.

The Status, Quality, and Expansion of the NIH Full-Length cDNA Project: The Mammalian Gene Collection (MGC)

Genome Res. 2004 Oct; 14(10b): 2121–2127. doi: 10.1101/gr.2596504

Correction in:: Genome Res. 2006 Jun; 16(6): 804.

PMCID:: PMC528928

Abstract Article PDF–140K

Select item 51531620.

Sequence Comparison of Human and Mouse Genes Reveals a Homologous Block Structure in the Promoter Regions

Yutaka Suzuki, Riu Yamashita, Matsuyuki Shirota, Yuta Sakakibara, Joe Chiba, Junko Mizushima-Sugano, Kenta Nakai, Sumio Sugano

Genome Res. 2004 Sep; 14(9): 1711–1718. doi: 10.1101/gr.2435604

PMCID:: PMC515316

Abstract Article PDF–181K

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