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Items: 1 to 20 of 225

1.
mcr-Colistin Resistance Genes Mobilized by IncX4, IncHI2, and IncI2 Plasmids in Escherichia coli of Pigs and White Stork in Spain
Lourdes Migura-Garcia, Juan J. González-López, Jaime Martinez-Urtaza, J. R. Aguirre Sánchez, A. Moreno-Mingorance, A. Perez de Rozas, Ursula Höfle, Y. Ramiro, Narjol Gonzalez-Escalona
Front Microbiol. 2019; 10: 3072. Published online 2020 Jan 17. doi: 10.3389/fmicb.2019.03072
PMCID:
PMC6978640
AbstractArticlePDF–2.0M
2.
Genetic boundaries delineate the potential human pathogen Salmonella bongori into discrete lineages: divergence and speciation
Xiaoyu Wang, Songling Zhu, Jian-Hua Zhao, Hong-Xia Bao, Huidi Liu, Tie-Min Ding, Gui-Rong Liu, Yong-Guo Li, Randal N. Johnston, Feng-Lin Cao, Le Tang, Shu-Lin Liu
BMC Genomics. 2019; 20: 930. Published online 2019 Dec 4. doi: 10.1186/s12864-019-6259-z
PMCID:
PMC6894293
AbstractArticlePDF–1.8M
3.
Pre-Harvest Survival and Post-Harvest Chlorine Tolerance of Enterohemorrhagic Escherichia coli on Lettuce
Deepti Tyagi, Autumn L. Kraft, Sara Levadney Smith, Sherry E. Roof, Julie S. Sherwood, Martin Wiedmann, Teresa M. Bergholz
Toxins (Basel) 2019 Nov; 11(11): 675. Published online 2019 Nov 19. doi: 10.3390/toxins11110675
PMCID:
PMC6891304
AbstractArticlePDF–486K
4.
Genomic analysis of Shiga toxin-producing Escherichia coli from patients and asymptomatic food handlers in Japan
Hiroaki Baba, Hajime Kanamori, Hayami Kudo, Yasutoshi Kuroki, Seiya Higashi, Kentaro Oka, Motomichi Takahashi, Makiko Yoshida, Kengo Oshima, Tetsuji Aoyagi, Koichi Tokuda, Mitsuo Kaku
PLoS One. 2019; 14(11): e0225340. Published online 2019 Nov 19. doi: 10.1371/journal.pone.0225340
PMCID:
PMC6863542
AbstractArticlePDF–1.8M
5.
Outbreak of Shiga toxin-producing Escherichia coli O157:H7 linked to raw drinking milk resolved by rapid application of advanced pathogen characterisation methods, England, August to October 2017
Juli Treacy, Claire Jenkins, Karthik Paranthaman, Frieda Jorgensen, Doris Mueller-Doblies, Muna Anjum, Lukeki Kaindama, Hassan Hartman, Miranda Kirchner, Therese Carson, Ishani Kar-Purkayastha
Euro Surveill. 2019 Apr 18; 24(16): 1800191. doi: 10.2807/1560-7917.ES.2019.24.16.1800191
PMCID:
PMC6826345
AbstractArticlePDF–381K
6.
Whole-Genome Sequence of Escherichia coli Serotype O157:H7 Strain ATCC 43888
Gaylen A. Uhlich, George C. Paoli, Xinmin Zhang, Elisa Andreozzi
Microbiol Resour Announc. 2019 Oct; 8(42): e00906-19. Published online 2019 Oct 17. doi: 10.1128/MRA.00906-19
PMCID:
PMC6797530
AbstractArticlePDF–132K
7.
Visualizing and comparing circular genomes using the CGView family of tools
Paul Stothard, Jason R Grant, Gary Van Domselaar
Brief Bioinform. 2019 Jul; 20(4): 1576–1582. Published online 2017 Jul 26. doi: 10.1093/bib/bbx081
PMCID:
PMC6781573
AbstractArticlePDF–1.2M
8.
Phage Predation Shapes the Population Structure of Shiga-Toxigenic Escherichia coli O157:H7 in the UK: An Evolutionary Perspective
Lauren A. Cowley, Timothy J. Dallman, Claire Jenkins, Samuel K. Sheppard
Front Genet. 2019; 10: 763. Published online 2019 Aug 30. doi: 10.3389/fgene.2019.00763
PMCID:
PMC6730009
AbstractArticlePDF–2.1M
9.
Effective Surveillance Using Multilocus Variable-Number Tandem-Repeat Analysis and Whole-Genome Sequencing for Enterohemorrhagic Escherichia coli O157
Kenichi Lee, Hidemasa Izumiya, Sunao Iyoda, Makoto Ohnishi
Appl Environ Microbiol. 2019 Sep 1; 85(17): e00728-19. Prepublished online 2019 Jun 21. Published online 2019 Aug 14. doi: 10.1128/AEM.00728-19
PMCID:
PMC6696959
AbstractArticlePDF–1.8M
10.
Molecular and Phenotypic Characteristics of Escherichia coli Isolates from Farmed Minks in Zhucheng, China
Jianhua Qiu, Zhiyu Jiang, Zijing Ju, Xiaonan Zhao, Jie Yang, Huijun Guo, Shuhong Sun
Biomed Res Int. 2019; 2019: 3917841. Published online 2019 Jun 27. doi: 10.1155/2019/3917841
PMCID:
PMC6620841
AbstractArticlePDF–2.1M
11.
Emergence and divergence of major lineages of Shiga-toxin-producing Escherichia coli in Australia
Danielle J. Ingle, Anders Gonçalves da Silva, Mary Valcanis, Susan A. Ballard, Torsten Seemann, Amy V. Jennison, Ivan Bastian, Rolf Wise, Martyn D. Kirk, Benjamin P. Howden, Deborah A. Williamson
Microb Genom. 2019 May; 5(5): e000268. Published online 2019 May 20. doi: 10.1099/mgen.0.000268
PMCID:
PMC6562248
AbstractArticlePDF–2.9M
12.
Multiple-locus variable-number tandem repeat analysis for strain discrimination of non-O157 Shiga toxin-producing Escherichia coli
Chris Timmons, Eija Trees, Efrain M. Ribot, Peter Gerner-Smidt, Patti LaFon, Sung Im, Li Maria Ma
J Microbiol Methods. Author manuscript; available in PMC 2019 Jun 6.
Published in final edited form as: J Microbiol Methods. 2016 Jun; 125: 70–80. Published online 2016 Apr 9. doi: 10.1016/j.mimet.2016.04.005
PMCID:
PMC6553613
AbstractArticlePDF–1003K
13.
Identification and prevalence of in vivo-induced genes in enterohaemorrhagic Escherichia coli
Marion Gardette, Simon Le Hello, Patricia Mariani-Kurkdjian, Laetitia Fabre, François Gravey, Annie Garrivier, Estelle Loukiadis, Grégory Jubelin
Virulence. 2019; 10(1): 180–193. Published online 2019 Mar 16. doi: 10.1080/21505594.2019.1582976
PMCID:
PMC6550539
AbstractArticlePDF–3.0M
14.
ConFindr: rapid detection of intraspecies and cross-species contamination in bacterial whole-genome sequence data
Andrew J. Low, Adam G. Koziol, Paul A. Manninger, Burton Blais, Catherine D. Carrillo
PeerJ. 2019; 7: e6995. Published online 2019 May 31. doi: 10.7717/peerj.6995
PMCID:
PMC6546082
AbstractArticlePDF–244K
15.
Influence of Plant Species, Tissue Type, and Temperature on the Capacity of Shiga-Toxigenic Escherichia coli To Colonize, Grow, and Be Internalized by Plants
Bernhard Merget, Ken J. Forbes, Fiona Brennan, Sean McAteer, Tom Shepherd, Norval J. C. Strachan, Nicola J. Holden
Appl Environ Microbiol. 2019 Jun 1; 85(11): e00123-19. Prepublished online 2019 Mar 22. Published online 2019 May 16. doi: 10.1128/AEM.00123-19
PMCID:
PMC6532046
AbstractArticlePDF–1.3M
16.
Rapid and Simple Universal Escherichia coli Genotyping Method Based on Multiple-Locus Variable-Number Tandem-Repeat Analysis Using Single-Tube Multiplex PCR and Standard Gel Electrophoresis
François Caméléna, André Birgy, Yasmine Smail, Céline Courroux, Patricia Mariani-Kurkdjian, Simon Le Hello, Stéphane Bonacorsi, Philippe Bidet
Appl Environ Microbiol. 2019 Mar 15; 85(6): e02812-18. Prepublished online 2019 Jan 4. Published online 2019 Mar 6. doi: 10.1128/AEM.02812-18
PMCID:
PMC6414366
AbstractArticlePDF–1.9M
17.
Whole genome sequencing based typing and characterisation of Shiga-toxin producing Escherichia coli strains belonging to O157 and O26 serotypes and isolated in dairy farms
Frederique Pasquali, Federica Palma, Marcello Trevisani, Antonio Parisi, Alex Lucchi, Alessandra De Cesare, Gerardo Manfreda
Ital J Food Saf. 2018 Dec 31; 7(4): 7673. Published online 2019 Feb 8. doi: 10.4081/ijfs.2018.7673
PMCID:
PMC6379698
AbstractArticlePDF–754K
18.
sRNA Target Prediction Organizing Tool (SPOT) Integrates Computational and Experimental Data To Facilitate Functional Characterization of Bacterial Small RNAs
Alisa M. King, Carin K. Vanderpool, Patrick H. Degnan
mSphere. 2019 Jan-Feb; 4(1): e00561-18. Published online 2019 Jan 30. doi: 10.1128/mSphere.00561-18
PMCID:
PMC6354806
AbstractArticlePDF–543K
19.
Impact of whole genome sequencing on the investigation of food-borne outbreaks of Shiga toxin-producing Escherichia coli serogroup O157:H7, England, 2013 to 2017
Claire Jenkins, Timothy J Dallman, Kathie A Grant
Euro Surveill. 2019 Jan 24; 24(4): 1800346. doi: 10.2807/1560-7917.ES.2019.24.4.1800346
PMCID:
PMC6352002
AbstractArticlePDF–254K
20.
Escherichia coli O157:H7 transcriptome datasets for comparison of RNA-seq and microarray platforms
Ewa Grabowiecka, David Martin, Louise Crozier, Nicola Holden
Data Brief. 2019 Feb; 22: 126–131. Published online 2018 Nov 30. doi: 10.1016/j.dib.2018.11.136
PMCID:
PMC6297237
AbstractArticlePDF–406K

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