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Select item 70415631.

Optimizing DNA Extraction Methods for Nanopore Sequencing of Neisseria gonorrhoeae Directly from Urine Samples

Teresa L. Street, Leanne Barker, Nicholas D. Sanderson, James Kavanagh, Sarah Hoosdally, Kevin Cole, Robert Newnham, Mathyruban Selvaratnam, Monique Andersson, Martin J. Llewelyn, Justin O’Grady, Derrick W. Crook, David W. Eyre

J Clin Microbiol. 2020 Mar; 58(3): e01822-19. Prepublished online 2019 Dec 18. Published online 2020 Feb 24. doi: 10.1128/JCM.01822-19

PMCID:: PMC7041563

Abstract Article PDF–1.9M

Select item 69273002.

Chlamydia trachomatis: when the virulence-associated genome backbone imports a prevalence-associated major antigen signature

Vítor Borges, Dora Cordeiro, Ana Isabel Salas, Zohra Lodhia, Cristina Correia, Joana Isidro, Cândida Fernandes, Ana Maria Rodrigues, Jacinta Azevedo, João Alves, João Roxo, Miguel Rocha, Rita Côrte-Real, Luís Vieira, Maria José Borrego, João Paulo Gomes

Microb Genom. 2019 Nov; 5(11): e000313. Published online 2019 Nov 7. doi: 10.1099/mgen.0.000313

PMCID:: PMC6927300

Abstract Article PDF–2.1M

Select item 68319223.

Potential clinical utility of multiple target quantitative polymerase chain reaction (qPCR) array to detect microbial pathogens in patients with chronic obstructive pulmonary disease (COPD)

Hannah E. O’Farrell, Janet G. Shaw, Felicia Goh, Rayleen V. Bowman, Kwun M. Fong, Lutz Krause, Ian A. Yang

J Thorac Dis. 2019 Oct; 11(Suppl 17): S2254–S2265. doi: 10.21037/jtd.2019.10.39

PMCID:: PMC6831922

Abstract Article PDF–1.2M

Select item 68034574.

Comprehensive Flux Modeling of Chlamydia trachomatis Proteome and qRT-PCR Data Indicate Biphasic Metabolic Differences Between Elementary Bodies and Reticulate Bodies During Infection

Manli Yang, Karthika Rajeeve, Thomas Rudel, Thomas Dandekar

Front Microbiol. 2019; 10: 2350. Published online 2019 Oct 15. doi: 10.3389/fmicb.2019.02350

PMCID:: PMC6803457

Abstract Article PDF–3.8M

Select item 67738645.

The functional ClpXP protease of Chlamydia trachomatis requires distinct clpP genes from separate genetic loci

Stefan Pan, Imran T. Malik, Dhana Thomy, Beate Henrichfreise, Peter Sass

Sci Rep. 2019; 9: 14129. Published online 2019 Oct 1. doi: 10.1038/s41598-019-50505-5

PMCID:: PMC6773864

Abstract Article PDF–3.9M

Select item 66860426.

Transposon Mutagenesis in Chlamydia trachomatis Identifies CT339 as a ComEC Homolog Important for DNA Uptake and Lateral Gene Transfer

Scott D. LaBrie, Zoë E. Dimond, Kelly S. Harrison, Srishti Baid, Jason Wickstrum, Robert J. Suchland, P. Scott Hefty

mBio. 2019 Jul-Aug; 10(4): e01343-19. Published online 2019 Aug 6. doi: 10.1128/mBio.01343-19

PMCID:: PMC6686042

Abstract Article PDF–2.2M

Select item 62917987.

Bioinformatic analysis of bacteria and host cell dual RNA-sequencing experiments

James W Marsh, Regan J Hayward, Amol C Shetty, Anup Mahurkar, Michael S Humphrys, Garry S A Myers

Brief Bioinform. 2018 Nov; 19(6): 1115–1129. Published online 2017 May 23. doi: 10.1093/bib/bbx043

PMCID:: PMC6291798

Abstract Article PDF–1.4M

Select item 59433168.

Amino acid compositions contribute to the proteins’ evolution under the influence of their abundances and genomic GC content

Meng-Ze Du, Shuo Liu, Zhi Zeng, Labena Abraham Alemayehu, Wen Wei, Feng-Biao Guo

Sci Rep. 2018; 8: 7382. Published online 2018 May 9. doi: 10.1038/s41598-018-25364-1

PMCID:: PMC5943316

Abstract Article PDF–2.9M

Select item 58261819.

Environmental Metagenomic Assemblies Reveal Seven New Highly Divergent Chlamydial Lineages and Hallmarks of a Conserved Intracellular Lifestyle

Trestan Pillonel, Claire Bertelli, Gilbert Greub

Front Microbiol. 2018; 9: 79. Published online 2018 Feb 20. doi: 10.3389/fmicb.2018.00079

PMCID:: PMC5826181

Abstract Article PDF–12M

Select item 581018210.

Genomic analyses of the Chlamydia trachomatis core genome show an association between chromosomal genome, plasmid type and disease

Bart Versteeg, Sylvia M. Bruisten, Yvonne Pannekoek, Keith A. Jolley, Martin C. J. Maiden, Arie van der Ende, Odile B. Harrison

BMC Genomics. 2018; 19: 130. Published online 2018 Feb 9. doi: 10.1186/s12864-018-4522-3

PMCID:: PMC5810182

Abstract Article PDF–1.1M

Select item 579091311.

Plasmid Negative Regulation of CPAF Expression Is Pgp4 Independent and Restricted to Invasive Chlamydia trachomatis Biovars

Michael John Patton, Chih-Yu Chen, Chunfu Yang, Stuart McCorrister, Chris Grant, Garrett Westmacott, Xin-Yong Yuan, Estela Ochoa, Robert Fariss, William M. Whitmire, John H. Carlson, Harlan D. Caldwell, Grant McClarty

mBio. 2018 Jan-Feb; 9(1): e02164-17. Published online 2018 Jan 30. doi: 10.1128/mBio.02164-17

PMCID:: PMC5790913

Abstract Article PDF–1.3M

Select item 554114212.

Global survey of mRNA levels and decay rates of Chlamydia trachomatis trachoma and lymphogranuloma venereum biovars

Rita Ferreira, Vítor Borges, Maria José Borrego, João Paulo Gomes

Heliyon. 2017 Jul; 3(7): e00364. Published online 2017 Jul 26. doi: 10.1016/j.heliyon.2017.e00364

PMCID:: PMC5541142

Abstract Article PDF–1.5M

Select item 545108213.

Rapid detection and strain typing of Chlamydia trachomatis using a highly multiplexed microfluidic PCR assay

Rosemary S. Turingan, Ludmila Kaplun, Greice Krautz-Peterson, Sarah Norsworthy, Anna Zolotova, Sandeep J. Joseph, Timothy D. Read, Deborah Dean, Eugene Tan, Richard F. Selden

PLoS One. 2017; 12(5): e0178653. Published online 2017 May 31. doi: 10.1371/journal.pone.0178653

PMCID:: PMC5451082

Abstract Article PDF–2.7M

Select item 517760814.

The Impact of Protein Phosphorylation on Chlamydial Physiology

Ja E. Claywell, Lea M. Matschke, Derek J. Fisher

Front Cell Infect Microbiol. 2016; 6: 197. Published online 2016 Dec 22. doi: 10.3389/fcimb.2016.00197

PMCID:: PMC5177608

Abstract Article PDF–1.0M

Select item 494318215.

Host-Associated Genomic Features of the Novel Uncultured Intracellular Pathogen Ca. Ichthyocystis Revealed by Direct Sequencing of Epitheliocysts

Weihong Qi, Lloyd Vaughan, Pantelis Katharios, Ralph Schlapbach, Helena M.B. Seth-Smith

Genome Biol Evol. 2016 Jun; 8(6): 1672–1689. Published online 2016 May 10. doi: 10.1093/gbe/evw111

PMCID:: PMC4943182

Abstract Article PDF–1.0M

Select item 485221816.

Chlamydia trachomatis virulence factor CT135 is stable in vivo but highly polymorphic in vitro

Christine Bonner, Harlan D. Caldwell, John H. Carlson, Morag R. Graham, Laszlo Kari, Gail L. Sturdevant, Shaun Tyler, Adrian Zetner, Grant McClarty

Pathog Dis. 2015 Aug; 73(6): ftv043. Published online 2015 Jun 24. doi: 10.1093/femspd/ftv043

PMCID:: PMC4852218

Abstract Article PDF–785K

Select item 483616617.

Does typing of Chlamydia trachomatis using housekeeping multilocus sequence typing reveal different sexual networks among heterosexuals and men who have sex with men?

Bart Versteeg, Sylvia M. Bruisten, Arie van der Ende, Yvonne Pannekoek

BMC Infect Dis. 2016; 16: 162. Published online 2016 Apr 18. doi: 10.1186/s12879-016-1486-2

PMCID:: PMC4836166

Abstract Article PDF–957K

Select item 464540618.

Expression and Localization of Predicted Inclusion Membrane Proteins in Chlamydia trachomatis

Mary M. Weber, Laura D. Bauler, Jennifer Lam, Ted Hackstadt

Infect Immun. 2015 Dec; 83(12): 4710–4718. Prepublished online 2015 Sep 28. Published online 2015 Nov 10. doi: 10.1128/IAI.01075-15

PMCID:: PMC4645406

Abstract Article PDF–1.1M

Select item 461619019.

Draft Genome Sequence of Chlamydia trachomatis Strain 54, Isolated from the Urogenital Tract of a Male in Japan

Tomohiro Yamazaki, Junji Matsuo, Momoka Kikuchi, Kentaro Miyamoto, Kentaro Oka, Motomichi Takahashi, Satoshi Takahashi, Torahiko Okubo, Hiroyuki Yamaguchi

Genome Announc. 2015 Sep-Oct; 3(5): e01242-15. Published online 2015 Oct 22. doi: 10.1128/genomeA.01242-15