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Select item 70400631.

A novel seed plants gene regulates oxidative stress tolerance in Arabidopsis thaliana

Neerakkal Sujeeth, Nikolay Mehterov, Saurabh Gupta, Muhammad K. Qureshi, Axel Fischer, Sebastian Proost, M. Amin Omidbakhshfard, Toshihiro Obata, Maria Benina, Nikola Staykov, Salma Balazadeh, Dirk Walther, Alisdair R. Fernie, Bernd Mueller-Roeber, Jacques Hille, Tsanko S. Gechev

Cell Mol Life Sci. 2020 Feb; 77(4): 705–718. Published online 2019 Jun 27. doi: 10.1007/s00018-019-03202-5

PMCID:: PMC7040063

Abstract Article PDF–1.6M

Select item 69976912.

Non-Catalytic Subunits Facilitate Quaternary Organization of Plastidic Acetyl-CoA Carboxylase

Kiran-Kumar Shivaiah, Geng Ding, Bryon Upton, Basil J. Nikolau

Plant Physiol. 2020 Feb; 182(2): 756–775. Published online 2019 Dec 2. doi: 10.1104/pp.19.01246

PMCID:: PMC6997691

Abstract Article PDF–1.7M

Select item 68942213.

A T-DNA mutant screen that combines high-throughput phenotyping with the efficient identification of mutated genes by targeted genome sequencing

Ulrike Frank, Susanne Kublik, Dörte Mayer, Marion Engel, Michael Schloter, Jörg Durner, Frank Gaupels

BMC Plant Biol. 2019; 19: 539. Published online 2019 Dec 4. doi: 10.1186/s12870-019-2162-7

PMCID:: PMC6894221

Abstract Article PDF–2.1M

Select item 68218024.

Detection and identification of transgenic events by next generation sequencing combined with enrichment technologies

Frédéric Debode, Julie Hulin, Benoît Charloteaux, Wouter Coppieters, Marc Hanikenne, Latifa Karim, Gilbert Berben

Sci Rep. 2019; 9: 15595. Published online 2019 Oct 30. doi: 10.1038/s41598-019-51668-x

PMCID:: PMC6821802

Abstract Article PDF–1.3M

Select item 68049235.

Targeted deletion of floral development genes in Arabidopsis with CRISPR/Cas9 using the RNA endoribonuclease Csy4 processing system

Yingzhu Liu, Yike Gao, Yaohui Gao, Qixiang Zhang

Hortic Res. 2019; 6: 99. Published online 2019 Aug 21. doi: 10.1038/s41438-019-0179-6

PMCID:: PMC6804923

Abstract Article PDF–2.7M

Select item 64169246.

GRIBCG: a software for selection of sgRNAs in the design of balancer chromosomes

Brian B. Merritt, Lily S. Cheung

BMC Bioinformatics. 2019; 20: 122. Published online 2019 Mar 12. doi: 10.1186/s12859-019-2712-x

PMCID:: PMC6416924

Abstract Article PDF–1.4M

Select item 62204467.

Assessing the impact of exact reads on reducing the error rate of read mapping

Farzaneh Salari, Fatemeh Zare-Mirakabad, Mehdi Sadeghi, Hassan Rokni-Zadeh

BMC Bioinformatics. 2018; 19: 406. Published online 2018 Nov 6. doi: 10.1186/s12859-018-2432-7

PMCID:: PMC6220446

Abstract Article PDF–1.9M

Select item 62156128.

Mosaic mitochondrial-plastid insertions into the nuclear genome show evidence of both non-homologous end joining and homologous recombination

Shir Portugez, William F. Martin, Einat Hazkani-Covo

BMC Evol Biol. 2018; 18: 162. Published online 2018 Nov 3. doi: 10.1186/s12862-018-1279-x

PMCID:: PMC6215612

Abstract Article PDF–900K

Select item 61300249.

PROTEIN PHOSHATASE 2A B’α and β Maintain Centromeric Sister Chromatid Cohesion during Meiosis in Arabidopsis

Guoliang Yuan, Behzad Heidari Ahootapeh, Shinichiro Komaki, Arp Schnittger, Cathrine Lillo, Nico De Storme, Danny Geelen

Plant Physiol. 2018 Sep; 178(1): 317–328. Published online 2018 Jul 30. doi: 10.1104/pp.18.00281

PMCID:: PMC6130024

Abstract Article PDF–1.6M

Select item 587225510.

Succinct colored de Bruijn graphs

Martin D. Muggli, Alexander Bowe, Noelle R. Noyes, Paul S. Morley, Keith E. Belk, Robert Raymond, Travis Gagie, Simon J. Puglisi, Christina Boucher

Bioinformatics. 2017 Oct 15; 33(20): 3181–3187. Published online 2017 Feb 14. doi: 10.1093/bioinformatics/btx067

PMCID:: PMC5872255

Abstract Article PDF–224K

Select item 563266411.

Global Analysis of Small RNA Dynamics during Seed Development of Picea glauca and Arabidopsis thaliana Populations Reveals Insights on their Evolutionary Trajectories

Yang Liu, Yousry A. El-Kassaby

Front Plant Sci. 2017; 8: 1719. Published online 2017 Oct 4. doi: 10.3389/fpls.2017.01719

PMCID:: PMC5632664

Abstract Article PDF–6.5M

Select item 557002812.

Contrasting Patterns of Nucleotide Substitution Rates Provide Insight into Dynamic Evolution of Plastid and Mitochondrial Genomes of Geranium

Seongjun Park, Tracey A. Ruhlman, Mao-Lun Weng, Nahid H. Hajrah, Jamal S.M. Sabir, Robert K. Jansen

Genome Biol Evol. 2017 Jun; 9(6): 1766–1780. Published online 2017 Jul 6. doi: 10.1093/gbe/evx124

PMCID:: PMC5570028

Abstract Article PDF–2.3M

Select item 550246013.

Interplay of Plasma Membrane and Vacuolar Ion Channels, Together with BAK1, Elicits Rapid Cytosolic Calcium Elevations in Arabidopsis during Aphid Feeding

Thomas R. Vincent, Marieta Avramova, James Canham, Peter Higgins, Natasha Bilkey, Sam T. Mugford, Marco Pitino, Masatsugu Toyota, Simon Gilroy, Anthony J. Miller, Saskia A. Hogenhout, Dale Sanders

Plant Cell. 2017 Jun; 29(6): 1460–1479. Published online 2017 May 30. doi: 10.1105/tpc.17.00136

PMCID:: PMC5502460

Abstract Article PDF–3.6M

Select item 526959414.

Analysis of carotenogenic genes promoters and WRKY transcription factors in response to salt stress in Dunaliella bardawil

Ming-Hua Liang, Jian-Guo Jiang

Sci Rep. 2017; 7: 37025. Published online 2017 Jan 27. doi: 10.1038/srep37025

PMCID:: PMC5269594

Abstract Article PDF–838K

Select item 485572615.

Jabba: hybrid error correction for long sequencing reads

Giles Miclotte, Mahdi Heydari, Piet Demeester, Stephane Rombauts, Yves Van de Peer, Pieter Audenaert, Jan Fostier

Algorithms Mol Biol. 2016; 11: 10. Published online 2016 May 3. doi: 10.1186/s13015-016-0075-7

PMCID:: PMC4855726

Abstract Article PDF–1.8M

Select item 481472016.

Agronomic and Seed Quality Traits Dissected by Genome-Wide Association Mapping in Brassica napus

Niklas Körber, Anja Bus, Jinquan Li, Isobel A. P. Parkin, Benjamin Wittkop, Rod J. Snowdon, Benjamin Stich

Front Plant Sci. 2016; 7: 386. Published online 2016 Mar 31. doi: 10.3389/fpls.2016.00386

PMCID:: PMC4814720

Abstract Article PDF–3.1M

Select item 476870317.

Characterization of SSR genomic abundance and identification of SSR markers for population genetics in Chinese jujube (Ziziphus jujuba Mill.)

Peng-cheng Fu, Yan-Zhao Zhang, Hui-yuan Ya, Qing-bo Gao

PeerJ. 2016; 4: e1735. Published online 2016 Feb 22. doi: 10.7717/peerj.1735

PMCID:: PMC4768703

Abstract Article PDF–377K

Select item 464285118.

Embryo-lethal phenotypes in early abp1 mutants are due to disruption of the neighboring BSM gene

Jaroslav Michalko, Marta Dravecká, Tobias Bollenbach, Jiří Friml

Version 1. F1000Res. 2015; 4: 1104. Published online 2015 Oct 23. doi: 10.12688/f1000research.7143.1

PMCID:: PMC4642851

Abstract Article PDF–4.2M

Select item 452736219.

An investigation into inter- and intragenomic variations of graphic genomic signatures

Rallis Karamichalis, Lila Kari, Stavros Konstantinidis, Steffen Kopecki

BMC Bioinformatics. 2015; 16: 246. Published online 2015 Aug 7. doi: 10.1186/s12859-015-0655-4

PMCID:: PMC4527362

Abstract Article PDF–2.5M

Select item 452691920.

The IDA/IDA-LIKE and PIP/PIP-LIKE gene families in Arabidopsis: phylogenetic relationship, expression patterns, and transcriptional effect of the PIPL3 peptide

Ane Kjersti Vie, Javad Najafi, Bin Liu, Per Winge, Melinka A. Butenko, Karina S. Hornslien, Robert Kumpf, Reidunn B. Aalen, Atle M. Bones, Tore Brembu

J Exp Bot. 2015 Aug; 66(17): 5351–5365. Published online 2015 Jun 10. doi: 10.1093/jxb/erv285