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Items: 1 to 20 of 72

1.
A novel seed plants gene regulates oxidative stress tolerance in Arabidopsis thaliana
Neerakkal Sujeeth, Nikolay Mehterov, Saurabh Gupta, Muhammad K. Qureshi, Axel Fischer, Sebastian Proost, M. Amin Omidbakhshfard, Toshihiro Obata, Maria Benina, Nikola Staykov, Salma Balazadeh, Dirk Walther, Alisdair R. Fernie, Bernd Mueller-Roeber, Jacques Hille, Tsanko S. Gechev
Cell Mol Life Sci. 2020 Feb; 77(4): 705–718. Published online 2019 Jun 27. doi: 10.1007/s00018-019-03202-5
PMCID:
PMC7040063
AbstractArticlePDF–1.6M
2.
A T-DNA mutant screen that combines high-throughput phenotyping with the efficient identification of mutated genes by targeted genome sequencing
Ulrike Frank, Susanne Kublik, Dörte Mayer, Marion Engel, Michael Schloter, Jörg Durner, Frank Gaupels
BMC Plant Biol. 2019; 19: 539. Published online 2019 Dec 4. doi: 10.1186/s12870-019-2162-7
PMCID:
PMC6894221
AbstractArticlePDF–2.1M
3.
Detection and identification of transgenic events by next generation sequencing combined with enrichment technologies
Frédéric Debode, Julie Hulin, Benoît Charloteaux, Wouter Coppieters, Marc Hanikenne, Latifa Karim, Gilbert Berben
Sci Rep. 2019; 9: 15595. Published online 2019 Oct 30. doi: 10.1038/s41598-019-51668-x
PMCID:
PMC6821802
AbstractArticlePDF–1.3M
4.
Targeted deletion of floral development genes in Arabidopsis with CRISPR/Cas9 using the RNA endoribonuclease Csy4 processing system
Yingzhu Liu, Yike Gao, Yaohui Gao, Qixiang Zhang
Hortic Res. 2019; 6: 99. Published online 2019 Aug 21. doi: 10.1038/s41438-019-0179-6
PMCID:
PMC6804923
AbstractArticlePDF–2.7M
5.
GRIBCG: a software for selection of sgRNAs in the design of balancer chromosomes
Brian B. Merritt, Lily S. Cheung
BMC Bioinformatics. 2019; 20: 122. Published online 2019 Mar 12. doi: 10.1186/s12859-019-2712-x
PMCID:
PMC6416924
AbstractArticlePDF–1.4M
6.
Assessing the impact of exact reads on reducing the error rate of read mapping
Farzaneh Salari, Fatemeh Zare-Mirakabad, Mehdi Sadeghi, Hassan Rokni-Zadeh
BMC Bioinformatics. 2018; 19: 406. Published online 2018 Nov 6. doi: 10.1186/s12859-018-2432-7
PMCID:
PMC6220446
AbstractArticlePDF–1.9M
7.
Mosaic mitochondrial-plastid insertions into the nuclear genome show evidence of both non-homologous end joining and homologous recombination
Shir Portugez, William F. Martin, Einat Hazkani-Covo
BMC Evol Biol. 2018; 18: 162. Published online 2018 Nov 3. doi: 10.1186/s12862-018-1279-x
PMCID:
PMC6215612
AbstractArticlePDF–900K
8.
PROTEIN PHOSHATASE 2A B’α and β Maintain Centromeric Sister Chromatid Cohesion during Meiosis in Arabidopsis
Guoliang Yuan, Behzad Heidari Ahootapeh, Shinichiro Komaki, Arp Schnittger, Cathrine Lillo, Nico De Storme, Danny Geelen
Plant Physiol. 2018 Sep; 178(1): 317–328. Published online 2018 Jul 30. doi: 10.1104/pp.18.00281
PMCID:
PMC6130024
AbstractArticlePDF–1.6M
9.
Succinct colored de Bruijn graphs
Martin D. Muggli, Alexander Bowe, Noelle R. Noyes, Paul S. Morley, Keith E. Belk, Robert Raymond, Travis Gagie, Simon J. Puglisi, Christina Boucher
Bioinformatics. 2017 Oct 15; 33(20): 3181–3187. Published online 2017 Feb 14. doi: 10.1093/bioinformatics/btx067
PMCID:
PMC5872255
AbstractArticlePDF–224K
10.
Global Analysis of Small RNA Dynamics during Seed Development of Picea glauca and Arabidopsis thaliana Populations Reveals Insights on their Evolutionary Trajectories
Yang Liu, Yousry A. El-Kassaby
Front Plant Sci. 2017; 8: 1719. Published online 2017 Oct 4. doi: 10.3389/fpls.2017.01719
PMCID:
PMC5632664
AbstractArticlePDF–6.5M
11.
Contrasting Patterns of Nucleotide Substitution Rates Provide Insight into Dynamic Evolution of Plastid and Mitochondrial Genomes of Geranium
Seongjun Park, Tracey A. Ruhlman, Mao-Lun Weng, Nahid H. Hajrah, Jamal S.M. Sabir, Robert K. Jansen
Genome Biol Evol. 2017 Jun; 9(6): 1766–1780. Published online 2017 Jul 6. doi: 10.1093/gbe/evx124
PMCID:
PMC5570028
AbstractArticlePDF–2.3M
12.
Interplay of Plasma Membrane and Vacuolar Ion Channels, Together with BAK1, Elicits Rapid Cytosolic Calcium Elevations in Arabidopsis during Aphid Feeding
Thomas R. Vincent, Marieta Avramova, James Canham, Peter Higgins, Natasha Bilkey, Sam T. Mugford, Marco Pitino, Masatsugu Toyota, Simon Gilroy, Anthony J. Miller, Saskia A. Hogenhout, Dale Sanders
Plant Cell. 2017 Jun; 29(6): 1460–1479. Published online 2017 May 30. doi: 10.1105/tpc.17.00136
PMCID:
PMC5502460
AbstractArticlePDF–3.6M
13.
Analysis of carotenogenic genes promoters and WRKY transcription factors in response to salt stress in Dunaliella bardawil
Ming-Hua Liang, Jian-Guo Jiang
Sci Rep. 2017; 7: 37025. Published online 2017 Jan 27. doi: 10.1038/srep37025
PMCID:
PMC5269594
AbstractArticlePDF–838K
14.
Jabba: hybrid error correction for long sequencing reads
Giles Miclotte, Mahdi Heydari, Piet Demeester, Stephane Rombauts, Yves Van de Peer, Pieter Audenaert, Jan Fostier
Algorithms Mol Biol. 2016; 11: 10. Published online 2016 May 3. doi: 10.1186/s13015-016-0075-7
PMCID:
PMC4855726
AbstractArticlePDF–1.8M
15.
Agronomic and Seed Quality Traits Dissected by Genome-Wide Association Mapping in Brassica napus
Niklas Körber, Anja Bus, Jinquan Li, Isobel A. P. Parkin, Benjamin Wittkop, Rod J. Snowdon, Benjamin Stich
Front Plant Sci. 2016; 7: 386. Published online 2016 Mar 31. doi: 10.3389/fpls.2016.00386
PMCID:
PMC4814720
AbstractArticlePDF–3.1M
16.
Characterization of SSR genomic abundance and identification of SSR markers for population genetics in Chinese jujube (Ziziphus jujuba Mill.)
Peng-cheng Fu, Yan-Zhao Zhang, Hui-yuan Ya, Qing-bo Gao
PeerJ. 2016; 4: e1735. Published online 2016 Feb 22. doi: 10.7717/peerj.1735
PMCID:
PMC4768703
AbstractArticlePDF–377K
17.
Embryo-lethal phenotypes in early abp1 mutants are due to disruption of the neighboring BSM gene
Jaroslav Michalko, Marta Dravecká, Tobias Bollenbach, Jiří Friml
Version 1. F1000Res. 2015; 4: 1104. Published online 2015 Oct 23. doi: 10.12688/f1000research.7143.1
PMCID:
PMC4642851
AbstractArticlePDF–4.2M
18.
Disruptive de novo mutations of DYRK1A lead to a syndromic form of autism and ID
Bregje W.M. van Bon, Bradley P. Coe, Raphael Bernier, Cherie Green, Jennifer Gerdts, Kali Witherspoon, Tjitske Kleefstra, Marjolein H. Willemsen, Raman Kumar, Paolo Bosco, Marco Fichera, Deana Li, David Amaral, Francesca Cristofoli, Hilde Peeters, Eric Haan, Corrado Romano, Heather C. Mefford, Ingrid Scheffer, Jozef Gecz, Bert B.A. de Vries, Evan E. Eichler
Mol Psychiatry. Author manuscript; available in PMC 2016 Jul 1.
Published in final edited form as: Mol Psychiatry. 2016 Jan; 21(1): 126–132. Published online 2015 Feb 24. doi: 10.1038/mp.2015.5
PMCID:
PMC4547916
AbstractArticlePDF–477K
19.
An investigation into inter- and intragenomic variations of graphic genomic signatures
Rallis Karamichalis, Lila Kari, Stavros Konstantinidis, Steffen Kopecki
BMC Bioinformatics. 2015; 16: 246. Published online 2015 Aug 7. doi: 10.1186/s12859-015-0655-4
PMCID:
PMC4527362
AbstractArticlePDF–2.5M
20.
The IDA/IDA-LIKE and PIP/PIP-LIKE gene families in Arabidopsis: phylogenetic relationship, expression patterns, and transcriptional effect of the PIPL3 peptide
Ane Kjersti Vie, Javad Najafi, Bin Liu, Per Winge, Melinka A. Butenko, Karina S. Hornslien, Robert Kumpf, Reidunn B. Aalen, Atle M. Bones, Tore Brembu
J Exp Bot. 2015 Aug; 66(17): 5351–5365. Published online 2015 Jun 10. doi: 10.1093/jxb/erv285
PMCID:
PMC4526919
AbstractArticlePDF–7.1M

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