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Select item 66974401.

Comparative Genomics Reveals Ecological and Evolutionary Insights into Sponge-Associated Thaumarchaeota

Shan Zhang, Weizhi Song, Bernd Wemheuer, Julie Reveillaud, Nicole Webster, Torsten Thomas

mSystems. 2019 Jul-Aug; 4(4): e00288-19. Published online 2019 Aug 13. doi: 10.1128/mSystems.00288-19

PMCID:: PMC6697440

Abstract Article PDF–3.2M

Select item 58810492.

Nitrogen Cycle Evaluation (NiCE) Chip for Simultaneous Analysis of Multiple N Cycle-Associated Genes

Mamoru Oshiki, Takahiro Segawa, Satoshi Ishii

Appl Environ Microbiol. 2018 Apr 15; 84(8): e02615-17. Prepublished online 2018 Feb 2. Published online 2018 Apr 2. doi: 10.1128/AEM.02615-17

PMCID:: PMC5881049

Abstract Article PDF–972K

Select item 57974283.

Candidatus Nitrosocaldus cavascurensis, an Ammonia Oxidizing, Extremely Thermophilic Archaeon with a Highly Mobile Genome

Sophie S. Abby, Michael Melcher, Melina Kerou, Mart Krupovic, Michaela Stieglmeier, Claudia Rossel, Kevin Pfeifer, Christa Schleper

Front Microbiol. 2018; 9: 28. Published online 2018 Jan 26. doi: 10.3389/fmicb.2018.00028

PMCID:: PMC5797428

Abstract Article PDF–4.2M

Select item 57677554.

Ammonia‐oxidising archaea living at low pH: Insights from comparative genomics

Craig W. Herbold, Laura E. Lehtovirta‐Morley, Man‐Young Jung, Nico Jehmlich, Bela Hausmann, Ping Han, Alexander Loy, Michael Pester, Luis A. Sayavedra‐Soto, Sung‐Keun Rhee, James I. Prosser, Graeme W. Nicol, Michael Wagner, Cécile Gubry‐Rangin

Environ Microbiol. 2017 Dec; 19(12): 4939–4952. Published online 2017 Dec 4. doi: 10.1111/1462-2920.13971

PMCID:: PMC5767755

Abstract Article PDF–714K

Select item 53255945.

Archaeal and bacterial communities in deep-sea hydrogenetic ferromanganese crusts on old seamounts of the northwestern Pacific

Shota Nitahara, Shingo Kato, Akira Usui, Tetsuro Urabe, Katsuhiko Suzuki, Akihiko Yamagishi

PLoS One. 2017; 12(2): e0173071. Published online 2017 Feb 24. doi: 10.1371/journal.pone.0173071

PMCID:: PMC5325594

Abstract Article PDF–6.5M

Select item 51504146.

Proteomics and comparative genomics of Nitrososphaera viennensis reveal the core genome and adaptations of archaeal ammonia oxidizers

Melina Kerou, Pierre Offre, Luis Valledor, Sophie S. Abby, Michael Melcher, Matthias Nagler, Wolfram Weckwerth, Christa Schleper

Proc Natl Acad Sci U S A. 2016 Dec 6; 113(49): E7937–E7946. Published online 2016 Nov 18. doi: 10.1073/pnas.1601212113

PMCID:: PMC5150414

Abstract Article PDF–1.4M

Select item 49119447.

Diversity and Distribution of Prokaryotes within a Shallow-Water Pockmark Field

Donato Giovannelli, Giuseppe d'Errico, Federica Fiorentino, Daniele Fattorini, Francesco Regoli, Lorenzo Angeletti, Tatjana Bakran-Petricioli, Costantino Vetriani, Mustafa Yücel, Marco Taviani, Elena Manini

Front Microbiol. 2016; 7: 941. Published online 2016 Jun 17. doi: 10.3389/fmicb.2016.00941

PMCID:: PMC4911944

Abstract Article PDF–5.8M

Select item 48449518.

Inhabitancy of active Nitrosopumilus-like ammonia-oxidizing archaea and Nitrospira nitrite-oxidizing bacteria in the sponge Theonella swinhoei

Guofang Feng, Wei Sun, Fengli Zhang, Loganathan Karthik, Zhiyong Li

Sci Rep. 2016; 6: 24966. Published online 2016 Apr 26. doi: 10.1038/srep24966

PMCID:: PMC4844951

Abstract Article PDF–1.8M

Select item 48395029.

Physiological and genomic characterization of two novel marine thaumarchaeal strains indicates niche differentiation

Barbara Bayer, Jana Vojvoda, Pierre Offre, Ricardo J E Alves, Nathalie H Elisabeth, Juan AL Garcia, Jean-Marie Volland, Abhishek Srivastava, Christa Schleper, Gerhard J Herndl

ISME J. 2016 May; 10(5): 1051–1063. Published online 2015 Nov 3. doi: 10.1038/ismej.2015.200

PMCID:: PMC4839502

Abstract Article PDF–1.6M

Select item 466035810.

Genomic and transcriptomic evidence for scavenging of diverse organic compounds by widespread deep-sea archaea

Meng Li, Brett J. Baker, Karthik Anantharaman, Sunit Jain, John A. Breier, Gregory J. Dick

Nat Commun. 2015; 6: 8933. Published online 2015 Nov 17. doi: 10.1038/ncomms9933

PMCID:: PMC4660358

Abstract Article PDF–310K

Select item 458525211.

Meta-omic signatures of microbial metal and nitrogen cycling in marine oxygen minimum zones

Jennifer B. Glass, Cecilia B. Kretz, Sangita Ganesh, Piyush Ranjan, Sherry L. Seston, Kristen N. Buck, William M. Landing, Peter L. Morton, James W. Moffett, Stephen J. Giovannoni, Kevin L. Vergin, Frank J. Stewart

Front Microbiol. 2015; 6: 998. Published online 2015 Sep 28. doi: 10.3389/fmicb.2015.00998

Correction in:: Front Microbiol. 2020; 11: 619943.

PMCID:: PMC4585252

Abstract Article PDF–7.8M

Select item 456194912.

Ecology and Distribution of Thaumarchaea in the Deep Hypolimnion of Lake Maggiore

Manuela Coci, Nina Odermatt, Michaela M. Salcher, Jakob Pernthaler, Gianluca Corno

Archaea. 2015; 2015: 590434. Published online 2015 Aug 25. doi: 10.1155/2015/590434

PMCID:: PMC4561949

Abstract Article PDF–1.3M

Select item 439088713.

Phylogeny and Taxonomy of Archaea: A Comparison of the Whole-Genome-Based CVTree Approach with 16S rRNA Sequence Analysis

Guanghong Zuo, Zhao Xu, Bailin Hao

Life (Basel) 2015 Mar; 5(1): 949–968. Published online 2015 Mar 17. doi: 10.3390/life5010949

PMCID:: PMC4390887

Abstract Article PDF–1019K

Select item 435118314.

Metagenome of a Microbial Community Inhabiting a Metal-Rich Tropical Stream Sediment

Patrícia S. Costa, Mariana P. Reis, Marcelo P. Ávila, Laura R. Leite, Flávio M. G. de Araújo, Anna C. M. Salim, Guilherme Oliveira, Francisco Barbosa, Edmar Chartone-Souza, Andréa M. A. Nascimento

PLoS One. 2015; 10(3): e0119465. Published online 2015 Mar 5. doi: 10.1371/journal.pone.0119465

PMCID:: PMC4351183

Abstract Article PDF–1.1M

Select item 416401015.

Ori-Finder 2, an integrated tool to predict replication origins in the archaeal genomes

Hao Luo, Chun-Ting Zhang, Feng Gao

Front Microbiol. 2014; 5: 482. Published online 2014 Sep 15. doi: 10.3389/fmicb.2014.00482

PMCID:: PMC4164010

Abstract Article PDF–1.9M

Select item 413934016.

A Long-Term Cultivation of an Anaerobic Methane-Oxidizing Microbial Community from Deep-Sea Methane-Seep Sediment Using a Continuous-Flow Bioreactor

Masataka Aoki, Masayuki Ehara, Yumi Saito, Hideyoshi Yoshioka, Masayuki Miyazaki, Yayoi Saito, Ai Miyashita, Shuji Kawakami, Takashi Yamaguchi, Akiyoshi Ohashi, Takuro Nunoura, Ken Takai, Hiroyuki Imachi

PLoS One. 2014; 9(8): e105356. Published online 2014 Aug 20. doi: 10.1371/journal.pone.0105356

PMCID:: PMC4139340

Abstract Article PDF–3.0M

Select item 412292517.

Pangenome Evidence for Extensive Interdomain Horizontal Transfer Affecting Lineage Core and Shell Genes in Uncultured Planktonic Thaumarchaeota and Euryarchaeota

Philippe Deschamps, Yvan Zivanovic, David Moreira, Francisco Rodriguez-Valera, Purificación López-García

Genome Biol Evol. 2014 Jul; 6(7): 1549–1563. Published online 2014 Jun 12. doi: 10.1093/gbe/evu127

PMCID:: PMC4122925

Abstract Article PDF–2.8M

Select item 355880218.

Mimicking the oxygen minimum zones: stimulating interaction of aerobic archaeal and anaerobic bacterial ammonia oxidizers in a laboratory-scale model system

Jia Yan, Suzanne C M Haaijer, Huub J M Op den Camp, Laura Niftrik, David A Stahl, Martin Könneke, Darci Rush, Jaap S Sinninghe Damsté, Yong Y Hu, Mike S M Jetten

Environ Microbiol. 2012 Dec; 14(12): 3146–3158. Published online 2012 Oct 12. doi: 10.1111/j.1462-2920.2012.02894.x