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Items: 1 to 20 of 22

1.
The conserved 3′ UTR-derived small RNA NarS mediates mRNA crossregulation during nitrate respiration
Chuan Wang, Yanjie Chao, Gianluca Matera, Qian Gao, Jörg Vogel
Nucleic Acids Res. 2020 Feb 28; 48(4): 2126–2143. Published online 2019 Dec 21. doi: 10.1093/nar/gkz1168
PMCID:
PMC7038943
AbstractArticlePDF–8.3M
2.
Occurrence of randomly recombined functional 16S rRNA genes in Thermus thermophilus suggests genetic interoperability and promiscuity of bacterial 16S rRNAs
Kentaro Miyazaki, Natsuki Tomariguchi
Sci Rep. 2019; 9: 11233. Published online 2019 Aug 2. doi: 10.1038/s41598-019-47807-z
PMCID:
PMC6677816
AbstractArticlePDF–1.6M
3.
Functional expansion of a TCA cycle operon mRNA by a 3′ end-derived small RNA
Masatoshi Miyakoshi, Gianluca Matera, Kanako Maki, Yasuhiro Sone, Jörg Vogel
Nucleic Acids Res. 2019 Feb 28; 47(4): 2075–2088. Published online 2018 Dec 12. doi: 10.1093/nar/gky1243
PMCID:
PMC6393394
AbstractArticlePDF–3.0M
4.
sRNA Target Prediction Organizing Tool (SPOT) Integrates Computational and Experimental Data To Facilitate Functional Characterization of Bacterial Small RNAs
Alisa M. King, Carin K. Vanderpool, Patrick H. Degnan
mSphere. 2019 Jan-Feb; 4(1): e00561-18. Published online 2019 Jan 30. doi: 10.1128/mSphere.00561-18
PMCID:
PMC6354806
AbstractArticlePDF–543K
5.
Complete genome sequence of Citrobacter werkmanii strain BF-6 isolated from industrial putrefaction
Gang Zhou, Hong Peng, Ying-si Wang, Xiao-mo Huang, Xiao-bao Xie, Qing-shan Shi
BMC Genomics. 2017; 18: 765. Published online 2017 Oct 10. doi: 10.1186/s12864-017-4157-9
PMCID:
PMC5635574
AbstractArticlePDF–2.5M
6.
Intermolecular base stacking mediates RNA-RNA interaction in a crystal structure of the RNA chaperone Hfq
Eike C. Schulz, Markus Seiler, Cecilia Zuliani, Franka Voigt, Vladimir Rybin, Vivian Pogenberg, Norbert Mücke, Matthias Wilmanns, Toby J. Gibson, Orsolya Barabas
Sci Rep. 2017; 7: 9903. Published online 2017 Aug 29. doi: 10.1038/s41598-017-10085-8
PMCID:
PMC5575007
AbstractArticlePDF–3.3M
7.
Natural RNA polymerase aptamers regulate transcription in E. coli
Nadezda Sedlyarova, Philipp Rescheneder, Andrés Magán, Niko Popitsch, Natascha Rziha, Ivana Bilusic, Vitaly Epshtein, Bob Zimmermann, Meghan Lybecker, Vitaly Sedlyarov, Renée Schroeder, Evgeny Nudler
Mol Cell. Author manuscript; available in PMC 2018 Jul 6.
Published in final edited form as: Mol Cell. 2017 Jul 6; 67(1): 30–43.e6. Published online 2017 Jun 22. doi: 10.1016/j.molcel.2017.05.025
PMCID:
PMC5535762
AbstractArticlePDF–904K
8.
The target spectrum of SdsR small RNA in Salmonella
Kathrin S. Fröhlich, Katharina Haneke, Kai Papenfort, Jörg Vogel
Nucleic Acids Res. 2016 Dec 1; 44(21): 10406–10422. Published online 2016 Jul 12. doi: 10.1093/nar/gkw632
PMCID:
PMC5137417
AbstractArticlePDF–3.5M
9.
Type 3 Fimbriae Encoded on Plasmids Are Expressed from a Unique Promoter without Affecting Host Motility, Facilitating an Exceptional Phenotype That Enhances Conjugal Plasmid Transfer
Jonas Stenløkke Madsen, Leise Riber, Witold Kot, Alrun Basfeld, Mette Burmølle, Lars Hestbjerg Hansen, Søren Johannes Sørensen
PLoS One. 2016; 11(9): e0162390. Published online 2016 Sep 14. doi: 10.1371/journal.pone.0162390
PMCID:
PMC5023117
AbstractArticlePDF–1.9M
10.
Restriction Profiling of 23S Microheterogenic Ribosomal Repeats for Detection and Characterizing of E. coli and Their Clonal, Pathogenic, and Phylogroups
Parvathi Jayasree Rajagopalan Nair, Sunita Singh
J Pathog. 2015; 2015: 562136. Published online 2015 Dec 22. doi: 10.1155/2015/562136
PMCID:
PMC4738725
AbstractArticlePDF–1.1M
11.
A small RNA activates CFA synthase by isoform-specific mRNA stabilization
Kathrin Sophie Fröhlich, Kai Papenfort, Agnes Fekete, Jörg Vogel
EMBO J. 2013 Nov 13; 32(22): 2963–2979. Published online 2013 Oct 18. doi: 10.1038/emboj.2013.222
PMCID:
PMC3831309
AbstractArticlePDF–1.3M
12.
Natural products genomics
Roland J. Siezen, Barzan I. Khayatt
Microb Biotechnol. 2008 Jul; 1(4): 275–282. Published online 2008 Jun 28. doi: 10.1111/j.1751-7915.2008.00044.x
PMCID:
PMC3815393
ArticlePDF–276K
13.
An RpoS-dependent sRNA regulates the expression of a chaperone involved in protein folding
Inês Jesus Silva, Álvaro Darío Ortega, Sandra Cristina Viegas, Francisco García-del Portillo, Cecília Maria Arraiano
RNA. 2013 Sep; 19(9): 1253–1265. doi: 10.1261/rna.039537.113
PMCID:
PMC3753932
AbstractArticlePDF–1.1M
14.
Sialic acid utilization by Cronobacter sakazakii
Susan Joseph, Sumyya Hariri, Naqash Masood, Stephen Forsythe
Microb Inform Exp. 2013; 3: 3. Published online 2013 May 24. doi: 10.1186/2042-5783-3-3
PMCID:
PMC3716653
AbstractArticlePDF–1.7M
15.
Comparative Genomics of CytR, an Unusual Member of the LacI Family of Transcription Factors
Natalia V. Sernova, Mikhail S. Gelfand
PLoS One. 2012; 7(9): e44194. Published online 2012 Sep 24. doi: 10.1371/journal.pone.0044194
PMCID:
PMC3454398
AbstractArticlePDF–3.6M
16.
A conserved RpoS-dependent small RNA controls the synthesis of major porin OmpD
Kathrin S. Fröhlich, Kai Papenfort, Allison A. Berger, Jörg Vogel
Nucleic Acids Res. 2012 Apr; 40(8): 3623–3640. Published online 2011 Dec 16. doi: 10.1093/nar/gkr1156
PMCID:
PMC3333887
AbstractArticlePDF–4.8M
17.
A Universal Method for the Identification of Bacteria Based on General PCR Primers
Sameer A. Barghouthi
Indian J Microbiol. 2011 Oct; 51(4): 430–444. Published online 2011 Feb 19. doi: 10.1007/s12088-011-0122-5
PMCID:
PMC3209952
AbstractArticlePDF–1.8M
18.
Citrobacter spp. as a Source of qnrB Alleles
George A. Jacoby, Caitlin M. Griffin, David C. Hooper
Antimicrob Agents Chemother. 2011 Nov; 55(11): 4979–4984. doi: 10.1128/AAC.05187-11
PMCID:
PMC3195048
AbstractArticlePDF–747K
19.
Genetic Structure and Distribution of the Colibactin Genomic Island among Members of the Family Enterobacteriaceae
Johannes Putze, Claire Hennequin, Jean-Philippe Nougayrède, Wenlan Zhang, Stefan Homburg, Helge Karch, Marie-Agnés Bringer, Corinne Fayolle, Elisabeth Carniel, Wolfgang Rabsch, Tobias A. Oelschlaeger, Eric Oswald, Christiane Forestier, Jörg Hacker, Ulrich Dobrindt
Infect Immun. 2009 Nov; 77(11): 4696–4703. Published online 2009 Aug 31. doi: 10.1128/IAI.00522-09
PMCID:
PMC2772509
AbstractArticlePDF–1.3M
20.
Genome Sequence of the Versatile Fish Pathogen Edwardsiella tarda Provides Insights into its Adaptation to Broad Host Ranges and Intracellular Niches
Qiyao Wang, Minjun Yang, Jingfan Xiao, Haizhen Wu, Xin Wang, Yuanzhi Lv, Lili Xu, Huajun Zheng, Shengyue Wang, Guoping Zhao, Qin Liu, Yuanxing Zhang
PLoS One. 2009; 4(10): e7646. Published online 2009 Oct 29. doi: 10.1371/journal.pone.0007646
PMCID:
PMC2764856
AbstractArticlePDF–728K

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