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Items: 1 to 20 of 22

1.
Comparative Genomic Analysis of Members of the Genera Methanosphaera and Methanobrevibacter Reveals Distinct Clades with Specific Potential Metabolic Functions
Anja Poehlein, Dominik Schneider, Melissa Soh, Rolf Daniel, Henning Seedorf
Archaea. 2018; 2018: 7609847. Published online 2018 Aug 19. doi: 10.1155/2018/7609847
PMCID:
PMC6120340
ArticlePDF–834K
2.
A Method for Identification of Selenoprotein Genes in Archaeal Genomes
Mingfeng Li, Yanzhao Huang, Yi Xiao
Genomics Proteomics Bioinformatics. 2009 Jun; 7(1-2): 62–70. Published online 2009 Jul 8. doi: 10.1016/S1672-0229(08)60034-0
PMCID:
PMC5054222
ArticlePDF–759K
3.
Phylogeny and Taxonomy of Archaea: A Comparison of the Whole-Genome-Based CVTree Approach with 16S rRNA Sequence Analysis
Guanghong Zuo, Zhao Xu, Bailin Hao
Life (Basel) 2015 Mar; 5(1): 949–968. Published online 2015 Mar 17. doi: 10.3390/life5010949
PMCID:
PMC4390887
ArticlePDF–1019K
4.
Archaea and the human gut: New beginning of an old story
Nadia Gaci, Guillaume Borrel, William Tottey, Paul William O’Toole, Jean-François Brugère
World J Gastroenterol. 2014 Nov 21; 20(43): 16062–16078. Published online 2014 Nov 21. doi: 10.3748/wjg.v20.i43.16062
PMCID:
PMC4239492
ArticlePDF–1.4M
5.
Diversity and Community Composition of Methanogenic Archaea in the Rumen of Scottish Upland Sheep Assessed by Different Methods
Timothy J. Snelling, Buğra Genç, Nest McKain, Mick Watson, Sinéad M. Waters, Christopher J. Creevey, R. John Wallace
PLoS One. 2014; 9(9): e106491. Published online 2014 Sep 24. doi: 10.1371/journal.pone.0106491
PMCID:
PMC4175461
ArticlePDF–684K
6.
Comparative genomics highlights the unique biology of Methanomassiliicoccales, a Thermoplasmatales-related seventh order of methanogenic archaea that encodes pyrrolysine
Guillaume Borrel, Nicolas Parisot, Hugh MB Harris, Eric Peyretaillade, Nadia Gaci, William Tottey, Olivier Bardot, Kasie Raymann, Simonetta Gribaldo, Pierre Peyret, Paul W O’Toole, Jean-François Brugère
BMC Genomics. 2014; 15: 679. Published online 2014 Aug 13. doi: 10.1186/1471-2164-15-679
PMCID:
PMC4153887
ArticlePDF–1.5M
7.
GenomeFingerprinter: The Genome Fingerprint and the Universal Genome Fingerprint Analysis for Systematic Comparative Genomics
Yuncan Ai, Hannan Ai, Fanmei Meng, Lei Zhao
PLoS One. 2013; 8(10): e77912. Published online 2013 Oct 29. doi: 10.1371/journal.pone.0077912
PMCID:
PMC3812135
ArticlePDF–1.7M
8.
Prokaryotic Phylogenies Inferred from Whole-Genome Sequence and Annotation Data
Wei Du, Zhongbo Cao, Yan Wang, Ying Sun, Enrico Blanzieri, Yanchun Liang
Biomed Res Int. 2013; 2013: 409062. Published online 2013 Aug 29. doi: 10.1155/2013/409062
PMCID:
PMC3773407
ArticlePDF–2.0M
9.
The Complete Genome Sequence of Methanobrevibacter sp. AbM4
S. C. Leahy, W. J. Kelly, D. Li, Y. Li, E. Altermann, S. C. Lambie, F. Cox, G. T. Attwood
Stand Genomic Sci. 2013 Jun 15; 8(2): 215–227. Published online 2013 May 25. doi: 10.4056/sigs.3977691
PMCID:
PMC3746419
ArticlePDF–6.4M
10.
Ribosomal Intergenic Spacer Analysis as a Tool for Monitoring Methanogenic Archaea Changes in an Anaerobic Digester
Slawomir Ciesielski, Katarzyna Bułkowska, Dorota Dabrowska, Dariusz Kaczmarczyk, Przemyslaw Kowal, Justyna Możejko
Curr Microbiol. 2013; 67(2): 240–248. Published online 2013 Mar 23. doi: 10.1007/s00284-013-0353-2
PMCID:
PMC3695317
ArticlePDF–425K
11.
Gene Capture Coupled to High-Throughput Sequencing as a Strategy for Targeted Metagenome Exploration
Jérémie Denonfoux, Nicolas Parisot, Eric Dugat-Bony, Corinne Biderre-Petit, Delphine Boucher, Diego P. Morgavi, Denis Le Paslier, Eric Peyretaillade, Pierre Peyret
DNA Res. 2013 Apr; 20(2): 185–196. Published online 2013 Jan 30. doi: 10.1093/dnares/dst001
PMCID:
PMC3628448
ArticlePDF–394K
12.
Tracing Lifestyle Adaptation in Prokaryotic Genomes
Eric Altermann
Front Microbiol. 2012; 3: 48. Published online 2012 Feb 21. doi: 10.3389/fmicb.2012.00048
PMCID:
PMC3282942
ArticlePDF–2.7M
13.
Genome Sequence of a Mesophilic Hydrogenotrophic Methanogen Methanocella paludicola, the First Cultivated Representative of the Order Methanocellales
Sanae Sakai, Yoshihiro Takaki, Shigeru Shimamura, Mitsuo Sekine, Takahisa Tajima, Hiroki Kosugi, Natsuko Ichikawa, Eiji Tasumi, Aiko T. Hiraki, Ai Shimizu, Yumiko Kato, Rika Nishiko, Koji Mori, Nobuyuki Fujita, Hiroyuki Imachi, Ken Takai
PLoS One. 2011; 6(7): e22898. Published online 2011 Jul 29. doi: 10.1371/journal.pone.0022898
PMCID:
PMC3146512
ArticlePDF–723K
14.
Genetic Characterization of the Capsulation Locus of Haemophilus influenzae Serotype e
Maria Giufrè, Rita Cardines, Paola Mastrantonio, Marina Cerquetti
J Clin Microbiol. 2010 Apr; 48(4): 1404–1407. Published online 2010 Jan 27. doi: 10.1128/JCM.01721-09
PMCID:
PMC2849579
ArticlePDF–123K
15.
Correlation of Methane Production and Functional Gene Transcriptional Activity in a Peat Soil
Thomas E. Freitag, James I. Prosser
Appl Environ Microbiol. 2009 Nov; 75(21): 6679–6687. Published online 2009 Sep 11. doi: 10.1128/AEM.01021-09
PMCID:
PMC2772438
ArticlePDF–333K
16.
High Prevalence of Methanobrevibacter smithii and Methanosphaera stadtmanae Detected in the Human Gut Using an Improved DNA Detection Protocol
Bédis Dridi, Mireille Henry, Amel El Khéchine, Didier Raoult, Michel Drancourt
PLoS One. 2009; 4(9): e7063. Published online 2009 Sep 17. doi: 10.1371/journal.pone.0007063
PMCID:
PMC2738942
ArticlePDF–96K
17.
A putative viral defence mechanism in archaeal cells
Reidun Lillestøl, Peter Redder, Roger A. Garrett, Kim Brügger
Archaea. 2006 Aug; 2(1): 59–72. Published online 2006 Jul 10. doi: 10.1155/2006/542818
PMCID:
PMC2685585
ArticlePDF–1.2M
18.
Sequence Evidence in the Archaeal Genomes that tRNAs Emerged Through the Combination of Ancestral Genes as 5′ and 3′ tRNA Halves
Kosuke Fujishima, Junichi Sugahara, Masaru Tomita, Akio Kanai
PLoS One. 2008; 3(2): e1622. Published online 2008 Feb 20. doi: 10.1371/journal.pone.0001622
PMCID:
PMC2237900
ArticlePDF–541K
19.
Clusters of orthologous genes for 41 archaeal genomes and implications for evolutionary genomics of archaea
Kira S Makarova, Alexander V Sorokin, Pavel S Novichkov, Yuri I Wolf, Eugene V Koonin
Biol Direct. 2007; 2: 33. Published online 2007 Nov 27. doi: 10.1186/1745-6150-2-33
PMCID:
PMC2222616
ArticlePDF–593K
20.
Modelling the evolution of the archeal tryptophan synthase
Rainer Merkl
BMC Evol Biol. 2007; 7: 59. Published online 2007 Apr 10. doi: 10.1186/1471-2148-7-59
PMCID:
PMC1854888
ArticlePDF–576K

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