Full text in PMC (nucleotide) for Gene (Select 3229916) - PMC

Select item 64365441.

Characterization of four TCE-dechlorinating microbial enrichments grown with different cobalamin stress and methanogenic conditions

Yujie Men, Patrick K. H. Lee, Katie C. Harding, Lisa Alvarez-Cohen

Appl Microbiol Biotechnol. Author manuscript; available in PMC 2019 Mar 27.

Published in final edited form as: Appl Microbiol Biotechnol. 2013 Jul; 97(14): 6439–6450. Published online 2013 May 3. doi: 10.1007/s00253-013-4896-8

PMCID:: PMC6436544

Abstract Article PDF–1002K

Select item 54403772.

Isolation and genomic characterization of a Dehalococcoides strain suggests genomic rearrangement during culture

Masafumi Yohda, Kentaro Ikegami, Yuto Aita, Mizuki Kitajima, Ayane Takechi, Megumi Iwamoto, Tomomi Fukuda, Noriyoshi Tamura, Junji Shibasaki, Seiji Koike, Daisuke Komatsu, Sakari Miyagi, Minoru Nishimura, Yoshihito Uchino, Akino Shiroma, Makiko Shimoji, Hinako Tamotsu, Noriko Ashimine, Misuzu Shinzato, Shun Ohki, Kazuma Nakano, Kuniko Teruya, Kazuhito Satou, Takashi Hirano, Osami Yagi

Sci Rep. 2017; 7: 2230. Published online 2017 May 22. doi: 10.1038/s41598-017-02381-0

PMCID:: PMC5440377

Abstract Article PDF–2.1M

Select item 49180113.

Genome sequence of the organohalide-respiring Dehalogenimonas alkenigignens type strain (IP3-3^T)

Trent A. Key, Dray P. Richmond, Kimberly S. Bowman, Yong-Joon Cho, Jongsik Chun, Milton S. da Costa, Fred A. Rainey, William M. Moe

Stand Genomic Sci. 2016; 11: 44. Published online 2016 Jun 23. doi: 10.1186/s40793-016-0165-7

PMCID:: PMC4918011

Abstract Article PDF–2.4M

Select item 47033854.

Distribution of Dehalococcoidia in the Anaerobic Deep Water of a Remote Meromictic Crater Lake and Detection of Dehalococcoidia-Derived Reductive Dehalogenase Homologous Genes

Corinne Biderre-Petit, Eric Dugat-Bony, Mickaël Mege, Nicolas Parisot, Lorenz Adrian, Anne Moné, Jérémie Denonfoux, Eric Peyretaillade, Didier Debroas, Delphine Boucher, Pierre Peyret

PLoS One. 2016; 11(1): e0145558. Published online 2016 Jan 6. doi: 10.1371/journal.pone.0145558

PMCID:: PMC4703385

Abstract Article PDF–888K

Select item 38158065.

The little bacteria that can – diversity, genomics and ecophysiology of ‘Dehalococcoides’ spp. in contaminated environments

Neslihan Taş, Miriam H. A. Van Eekert, Willem M. De Vos, Hauke Smidt

Microb Biotechnol. 2010 Jul; 3(4): 389–402. Published online 2010 Jun 24. doi: 10.1111/j.1751-7915.2009.00147.x

PMCID:: PMC3815806

Abstract Article PDF–1017K

Select item 33877986.

Complete genome sequence of Dehalogenimonas lykanthroporepellens type strain (BL-DC-9^T) and comparison to “Dehalococcoides” strains

Shivakumara Siddaramappa, Jean F. Challacombe, Susana F. Delano, Lance D. Green, Hajnalka Daligault, David Bruce, Chris Detter, Roxanne Tapia, Shunsheng Han, Lynne Goodwin, James Han, Tanja Woyke, Sam Pitluck, Len Pennacchio, Matt Nolan, Miriam Land, Yun-Juan Chang, Nikos C. Kyrpides, Galina Ovchinnikova, Loren Hauser, Alla Lapidus, Jun Yan, Kimberly S. Bowman, Milton S. da Costa, Fred A. Rainey, William M. Moe

Stand Genomic Sci. 2012 May 25; 6(2): 251–264. Published online 2012 May 15. doi: 10.4056/sigs.2806097

PMCID:: PMC3387798

Abstract Article PDF–3.8M

Select item 31474747.

Design and Verification of a Pangenome Microarray Oligonucleotide Probe Set for Dehalococcoides spp.

Laura A. Hug, Maryam Salehi, Paulo Nuin, Elisabeth R. Tillier, Elizabeth A. Edwards

Appl Environ Microbiol. 2011 Aug; 77(15): 5361–5369. doi: 10.1128/AEM.00063-11

PMCID:: PMC3147474

Abstract Article PDF–895K

Select item 31464518.

Site-Specific Mobilization of Vinyl Chloride Respiration Islands by a Mechanism Common in Dehalococcoides

Paul J McMurdie, Laura A Hug, Elizabeth A Edwards, Susan Holmes, Alfred M Spormann

BMC Genomics. 2011; 12: 287. Published online 2011 Jun 2. doi: 10.1186/1471-2164-12-287

PMCID:: PMC3146451

Abstract Article PDF–974K

Select item 27648469.

Localized Plasticity in the Streamlined Genomes of Vinyl Chloride Respiring Dehalococcoides

Paul J. McMurdie, Sebastian F. Behrens, Jochen A. Müller, Jonathan Göke, Kirsti M. Ritalahti, Ryan Wagner, Eugene Goltsman, Alla Lapidus, Susan Holmes, Frank E. Löffler, Alfred M. Spormann

PLoS Genet. 2009 Nov; 5(11): e1000714. Published online 2009 Nov 6. doi: 10.1371/journal.pgen.1000714

PMCID:: PMC2764846

Abstract Article PDF–447K

Select item 256311510.

Bioinformatics identification of MurJ (MviN) as the peptidoglycan lipid II flippase in Escherichia coli

Natividad Ruiz

Proc Natl Acad Sci U S A. 2008 Oct 7; 105(40): 15553–15557. Published online 2008 Oct 1. doi: 10.1073/pnas.0808352105

PMCID:: PMC2563115

Abstract Article PDF–397K

Select item 254705611.

Monitoring Abundance and Expression of “Dehalococcoides” Species Chloroethene-Reductive Dehalogenases in a Tetrachloroethene-Dechlorinating Flow Column

Sebastian Behrens, Mohammad F. Azizian, Paul J. McMurdie, Andrew Sabalowsky, Mark E. Dolan, Lew Semprini, Alfred M. Spormann

Appl Environ Microbiol. 2008 Sep; 74(18): 5695–5703. Published online 2008 Aug 1. doi: 10.1128/AEM.00926-08

PMCID:: PMC2547056

Abstract Article PDF–290K

Select item 224190512.

Codon choice in genes depends on flanking sequence information—implications for theoretical reverse translation

Karthikeyan Sivaraman, AswinSaiNarain Seshasayee, Patrick M. Tarwater, Alexander M. Cole

Nucleic Acids Res. 2008 Feb; 36(3): e16. Published online 2008 Jan 18. doi: 10.1093/nar/gkm1181

PMCID:: PMC2241905

Abstract Article PDF–260K

Select item 156366013.

Discrimination of Multiple Dehalococcoides Strains in a Trichloroethene Enrichment by Quantification of Their Reductive Dehalogenase Genes

Victor F. Holmes, Jianzhong He, Patrick K. H. Lee, Lisa Alvarez-Cohen

Appl Environ Microbiol. 2006 Sep; 72(9): 5877–5883. doi: 10.1128/AEM.00516-06

PMCID:: PMC1563660

Abstract Article PDF–215K

Select item 142813214.

Complete Genome Sequence of the Dehalorespiring Bacterium Desulfitobacterium hafniense Y51 and Comparison with Dehalococcoides ethenogenes 195

Hiroshi Nonaka, Gabor Keresztes, Yoshifumi Shinoda, Yuko Ikenaga, Miyuki Abe, Kae Naito, Kenichi Inatomi, Kensuke Furukawa, Masayuki Inui, Hideaki Yukawa

J Bacteriol. 2006 Mar; 188(6): 2262–2274. doi: 10.1128/JB.188.6.2262-2274.2006

PMCID:: PMC1428132

Abstract Article PDF–629K

Select item 116025815.

MICheck: a web tool for fast checking of syntactic annotations of bacterial genomes

Stéphane Cruveiller, Jérôme Le Saux, David Vallenet, Aurélie Lajus, Stéphanie Bocs, Claudine Médigue

Nucleic Acids Res. 2005 Jul 1; 33(Web Server issue): W471–W479. Published online 2005 Jun 27. doi: 10.1093/nar/gki498

PMCID:: PMC1160258

Abstract Article PDF–375K

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