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Select item 63957921.

Porphyrin Excretion Resulting From Mutation of a Gene Encoding a Class I Fructose 1,6-Bisphosphate Aldolase in Rhodobacter capsulatus

Hao Ding, Rafael G. Saer, J. Thomas Beatty

Front Microbiol. 2019; 10: 301. Published online 2019 Feb 22. doi: 10.3389/fmicb.2019.00301

PMCID:: PMC6395792

Abstract Article PDF–3.4M

Select item 63480982.

Prioritizing bona fide bacterial small RNAs with machine learning classifiers

Erik J.J. Eppenhof, Lourdes Peña-Castillo

PeerJ. 2019; 7: e6304. Published online 2019 Jan 24. doi: 10.7717/peerj.6304

PMCID:: PMC6348098

Abstract Article PDF–767K

Select item 62928993.

Comparative genome analysis of marine purple sulfur bacterium Marichromatium gracile YL28 reveals the diverse nitrogen cycle mechanisms and habitat-specific traits

Bitong Zhu, Xiaobo Zhang, Chungui Zhao, Shicheng Chen, Suping Yang

Sci Rep. 2018; 8: 17803. Published online 2018 Dec 13. doi: 10.1038/s41598-018-36160-2

PMCID:: PMC6292899

Abstract Article PDF–2.0M

Select item 61991354.

Differing isoforms of the cobalamin binding photoreceptor AerR oppositely regulate photosystem expression

Haruki Yamamoto, Mingxu Fang, Vladimira Dragnea, Carl E Bauer

eLife. 2018; 7: e39028. Published online 2018 Oct 3. doi: 10.7554/eLife.39028

PMCID:: PMC6199135

Abstract Article PDF–3.5M

Select item 56694435.

The gene transfer agent-like particle of the marine phototrophic bacterium Rhodovulum sulfidophilum

Nobuyoshi Nagao, Junya Yamamoto, Hiroyuki Komatsu, Hiromichi Suzuki, Yuu Hirose, So Umekage, Takashi Ohyama, Yo Kikuchi

Biochem Biophys Rep. 2015 Dec; 4: 369–374. Published online 2015 Nov 4. doi: 10.1016/j.bbrep.2015.11.002

PMCID:: PMC5669443

Abstract Article PDF–991K

Select item 55465466.

Genome-wide identification and characterization of small RNAs in Rhodobacter capsulatus and identification of small RNAs affected by loss of the response regulator CtrA

Marc P. Grüll, Lourdes Peña-Castillo, Martin E. Mulligan, Andrew S. Lang

RNA Biol. 2017; 14(7): 914–925. Published online 2017 Mar 15. doi: 10.1080/15476286.2017.1306175

PMCID:: PMC5546546

Abstract Article PDF–1.2M

Select item 53385577.

Sulfide-responsive transcriptional repressor SqrR functions as a master regulator of sulfide-dependent photosynthesis

Takayuki Shimizu, Jiangchuan Shen, Mingxu Fang, Yixiang Zhang, Koichi Hori, Jonathan C. Trinidad, Carl E. Bauer, David P. Giedroc, Shinji Masuda

Proc Natl Acad Sci U S A. 2017 Feb 28; 114(9): 2355–2360. Published online 2017 Feb 14. doi: 10.1073/pnas.1614133114

PMCID:: PMC5338557

Abstract Article PDF–982K

Select item 40406078.

Functional type 2 photosynthetic reaction centers found in the rare bacterial phylum Gemmatimonadetes

Yonghui Zeng, Fuying Feng, Hana Medová, Jason Dean, Michal Koblížek

Proc Natl Acad Sci U S A. 2014 May 27; 111(21): 7795–7800. Published online 2014 May 12. doi: 10.1073/pnas.1400295111

PMCID:: PMC4040607

Abstract Article PDF–1.4M

Select item 39243699.

Draft Genome Sequences of Six Rhodobacter capsulatus Strains, YW1, YW2, B6, Y262, R121, and DE442

Hao Ding, Michelle M. Moksa, Martin Hirst, J. Thomas Beatty

Genome Announc. 2014 Jan-Feb; 2(1): e00050-14. Published online 2014 Feb 13. doi: 10.1128/genomeA.00050-14

PMCID:: PMC3924369

Abstract Article PDF–138K

Select item 390328710.

Intracytoplasmic Copper Homeostasis Controls Cytochrome c Oxidase Production

Seda Ekici, Serdar Turkarslan, Grzegorz Pawlik, Andrew Dancis, Nitin S. Baliga, Hans-Georg Koch, Fevzi Daldal

mBio. 2014 Jan-Feb; 5(1): e01055-13. Published online 2014 Jan 14. doi: 10.1128/mBio.01055-13

PMCID:: PMC3903287

Abstract Article PDF–1.2M

Select item 376585411.

De novo likelihood-based measures for comparing genome assemblies

Mohammadreza Ghodsi, Christopher M Hill, Irina Astrovskaya, Henry Lin, Dan D Sommer, Sergey Koren, Mihai Pop

BMC Res Notes. 2013; 6: 334. Published online 2013 Aug 22. doi: 10.1186/1756-0500-6-334

PMCID:: PMC3765854

Abstract Article PDF–536K

Select item 367394412.

Transcriptional regulation of the Rhodobacter capsulatus response regulator CtrA

Molly M. Leung, Cedric A. Brimacombe, J. Thomas Beatty

Microbiology. Author manuscript; available in PMC 2013 Jun 5.

Published in final edited form as: Microbiology. 2013 Jan; 159(Pt 1): 96–106. Published online 2012 Nov 15. doi: 10.1099/mic.0.062349-0

PMCID:: PMC3673944

Abstract Article PDF–1.1M

Select item 364104813.

The GtaR protein negatively regulates transcription of the gtaRI operon and modulates gene transfer agent (RcGTA) expression in Rhodobacter capsulatus

Molly M. Leung, Cedric A. Brimacombe, G. B. Spiegelman, J. Thomas Beatty

Mol Microbiol. Author manuscript; available in PMC 2013 May 1.

Published in final edited form as: Mol Microbiol. 2012 Feb; 83(4): 759–774. Published online 2012 Jan 11. doi: 10.1111/j.1365-2958.2011.07963.x

PMCID:: PMC3641048

Abstract Article PDF–1.5M

Select item 364104614.

Quorum-sensing regulation of a capsular polysaccharide receptor for the Rhodobacter capsulatus gene transfer agent (RcGTA)

Cedric A. Brimacombe, Aaron Stevens, Daniel Jun, Ryan Mercer, Andrew S. Lang, J. Thomas Beatty

Mol Microbiol. Author manuscript; available in PMC 2013 May 1.

Published in final edited form as: Mol Microbiol. 2013 Feb; 87(4): 802–817. Published online 2013 Jan 11. doi: 10.1111/mmi.12132

PMCID:: PMC3641046

Abstract Article PDF–1.5M

Select item 362319215.

Distribution and Origin of Oxygen-Dependent and Oxygen-Independent Forms of Mg-Protoporphyrin Monomethylester Cyclase among Phototrophic Proteobacteria

Ekaterina N. Boldareva-Nuianzina, Zuzana Bláhová, Roman Sobotka, Michal Koblížek

Appl Environ Microbiol. 2013 Apr; 79(8): 2596–2604. doi: 10.1128/AEM.00104-13

PMCID:: PMC3623192

Abstract Article PDF–1.1M

Select item 333878216.

Gain and Loss of Phototrophic Genes Revealed by Comparison of Two Citromicrobium Bacterial Genomes

Qiang Zheng, Rui Zhang, Paul C. M. Fogg, J. Thomas Beatty, Yu Wang, Nianzhi Jiao

PLoS One. 2012; 7(4): e35790. Published online 2012 Apr 27. doi: 10.1371/journal.pone.0035790

PMCID:: PMC3338782

Abstract Article PDF–733K

Select item 317679917.

Diverse Arrangement of Photosynthetic Gene Clusters in Aerobic Anoxygenic Phototrophic Bacteria

Qiang Zheng, Rui Zhang, Michal Koblížek, Ekaterina N. Boldareva, Vladimir Yurkov, Shi Yan, Nianzhi Jiao

PLoS One. 2011; 6(9): e25050. Published online 2011 Sep 20. doi: 10.1371/journal.pone.0025050

PMCID:: PMC3176799

Abstract Article PDF–692K

Select item 289766518.

Complete Genome Sequence of the Photosynthetic Purple Nonsulfur Bacterium Rhodobacter capsulatus SB 1003

Hynek Strnad, Alla Lapidus, Jan Paces, Pavel Ulbrich, Cestmir Vlcek, Vaclav Paces, Robert Haselkorn

J Bacteriol. 2010 Jul; 192(13): 3545–3546. Published online 2010 Apr 23. doi: 10.1128/JB.00366-10

PMCID:: PMC2897665

Abstract Article PDF–39K

Select item 287649719.

Loss of the Response Regulator CtrA Causes Pleiotropic Effects on Gene Expression but Does Not Affect Growth Phase Regulation in Rhodobacter capsulatus

Ryan G. Mercer, Stephen J. Callister, Mary S. Lipton, Ljiljana Pasa-Tolic, Hynek Strnad, Vaclav Paces, J. Thomas Beatty, Andrew S. Lang

J Bacteriol. 2010 Jun; 192(11): 2701–2710. Published online 2010 Apr 2. doi: 10.1128/JB.00160-10

PMCID:: PMC2876497

Abstract Article PDF–401K

Select item 10742520.

Physiological Control and Regulation of the Rhodobacter capsulatus cbb Operons

George C. Paoli, Padungsri Vichivanives, F. Robert Tabita

J Bacteriol. 1998 Aug; 180(16): 4258–4269. doi: 10.1128/jb.180.16.4258-4269.1998

PMCID:: PMC107425

Abstract Article PDF–692K

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