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Select item 63969661.

GrgA as a potential target of selective antichlamydials

Huirong Zhang, Sangeevan Vellappan, M. Matt Tang, Xiaofeng Bao, Huizhou Fan

PLoS One. 2019; 14(3): e0212874. Published online 2019 Mar 1. doi: 10.1371/journal.pone.0212874

PMCID:: PMC6396966

Abstract Article PDF–814K

Select item 62455972.

SWIFOLD: Smith-Waterman implementation on FPGA with OpenCL for long DNA sequences

Enzo Rucci, Carlos Garcia, Guillermo Botella, Armando De Giusti, Marcelo Naiouf, Manuel Prieto-Matias

BMC Syst Biol. 2018; 12(Suppl 5): 96. Published online 2018 Nov 20. doi: 10.1186/s12918-018-0614-6

PMCID:: PMC6245597

Abstract Article PDF–746K

Select item 60136703.

Chlamydia muridarum Genital and Gastrointestinal Infection Tropism Is Mediated by Distinct Chromosomal Factors

Sandra G. Morrison, Amanda M. Giebel, Evelyn C. Toh, Horace J. Spencer, III, David E. Nelson, Richard P. Morrison

Infect Immun. 2018 Jul; 86(7): e00141-18. Prepublished online 2018 Apr 16. Published online 2018 Jun 21. doi: 10.1128/IAI.00141-18

PMCID:: PMC6013670

Abstract Article PDF–1.0M

Select item 58719464.

The Chlamydia muridarum plasmid revisited : new insights into growth kinetics

Rachel J. Skilton, Yibing Wang, Colette O'Neill, Simone Filardo, Peter Marsh, Angèle Bénard, Nicholas R. Thomson, Kyle H. Ramsey, Ian N. Clarke

Version 1. Wellcome Open Res. 2018; 3: 25. Published online 2018 Mar 8. doi: 10.12688/wellcomeopenres.13905.1

PMCID:: PMC5871946

Abstract Article PDF–4.8M

Select item 58261815.

Environmental Metagenomic Assemblies Reveal Seven New Highly Divergent Chlamydial Lineages and Hallmarks of a Conserved Intracellular Lifestyle

Trestan Pillonel, Claire Bertelli, Gilbert Greub

Front Microbiol. 2018; 9: 79. Published online 2018 Feb 20. doi: 10.3389/fmicb.2018.00079

PMCID:: PMC5826181

Abstract Article PDF–12M

Select item 57178336.

From genomes to genotypes: molecular epidemiological analysis of Chlamydia gallinacea reveals a high level of genetic diversity for this newly emerging chlamydial pathogen

Weina Guo, Martina Jelocnik, Jing Li, Konrad Sachse, Adam Polkinghorne, Yvonne Pannekoek, Bernhard Kaltenboeck, Jiansen Gong, Jinfeng You, Chengming Wang

BMC Genomics. 2017; 18: 949. Published online 2017 Dec 6. doi: 10.1186/s12864-017-4343-9

PMCID:: PMC5717833

Abstract Article PDF–1.4M

Select item 54958047.

Failure of phylogeny inferred from multilocus sequence typing to represent bacterial phylogeny

Alan K. L. Tsang, Hwei Huih Lee, Siu-Ming Yiu, Susanna K. P. Lau, Patrick C. Y. Woo

Sci Rep. 2017; 7: 4536. Published online 2017 Jul 3. doi: 10.1038/s41598-017-04707-4

PMCID:: PMC5495804

Abstract Article PDF–6.1M

Select item 52601208.

Multi-CAR: a tool of contig scaffolding using multiple references

Kun-Tze Chen, Cheih-Jung Chen, Hsin-Ting Shen, Chia-Liang Liu, Shang-Hao Huang, Chin Lung Lu

BMC Bioinformatics. 2016; 17(Suppl 17): 469. Published online 2016 Dec 23. doi: 10.1186/s12859-016-1328-7

PMCID:: PMC5260120

Abstract Article PDF–1011K

Select item 50118939.

Culture-independent genomic characterisation of Candidatus Chlamydia sanzinia, a novel uncultivated bacterium infecting snakes

Alyce Taylor-Brown, Nathan L. Bachmann, Nicole Borel, Adam Polkinghorne

BMC Genomics. 2016; 17(1): 710. Published online 2016 Sep 5. doi: 10.1186/s12864-016-3055-x

PMCID:: PMC5011893

Abstract Article PDF–1.1M

Select item 473058610.

The Chromosome-Encoded Hypothetical Protein TC0668 Is an Upper Genital Tract Pathogenicity Factor of Chlamydia muridarum

Turner Allen Conrad, Siqi Gong, Zhangsheng Yang, Patrick Matulich, Jonathon Keck, Noah Beltrami, Chaoqun Chen, Zhou Zhou, Jin Dai, Guangming Zhong

Infect Immun. 2016 Feb; 84(2): 467–479. Prepublished online 2015 Nov 23. Published online 2016 Jan 25. doi: 10.1128/IAI.01171-15

PMCID:: PMC4730586

Abstract Article PDF–3.4M

Select item 463268011.

Genetic diversity in the plasticity zone and the presence of the chlamydial plasmid differentiates Chlamydia pecorum strains from pigs, sheep, cattle, and koalas

Martina Jelocnik, Nathan L. Bachmann, Bernhard Kaltenboeck, Courtney Waugh, Lucy Woolford, K. Natasha Speight, Amber Gillett, Damien P. Higgins, Cheyne Flanagan, Garry S. A. Myers, Peter Timms, Adam Polkinghorne

BMC Genomics. 2015; 16: 893. Published online 2015 Nov 4. doi: 10.1186/s12864-015-2053-8

PMCID:: PMC4632680

Abstract Article PDF–1.6M

Select item 458999712.

Evidence for horizontal gene transfer between Chlamydophila pneumoniae and Chlamydia phage

Anne G Rosenwald, Bradley Murray, Theodore Toth, Ramana Madupu, Alexandra Kyrillos, Gaurav Arora

Bacteriophage. 2014; 4(4): e965076. Published online 2014 Dec 15. doi: 10.4161/21597073.2014.965076

PMCID:: PMC4589997

Abstract Article PDF–419K

Select item 446854513.

Mutational Analysis of the Chlamydia muridarum Plasticity Zone

Krithika Rajaram, Amanda M. Giebel, Evelyn Toh, Shuai Hu, Jasmine H. Newman, Sandra G. Morrison, Laszlo Kari, Richard P. Morrison, David E. Nelson

Infect Immun. 2015 Jul; 83(7): 2870–2881. Prepublished online 2015 May 4. Published online 2015 Jun 15. doi: 10.1128/IAI.00106-15

PMCID:: PMC4468545

Abstract Article PDF–1.6M

Select item 439956514.

Genomic variant representation in a Chlamydia population is dynamic and adaptive with dependence on in vitro and in vivo passage

Deana K. Jasper, Ira M. Sigar, Justin H. Schripsema, Carlyn K. Sainvil, Christopher L. Smith, Laxmi Yeruva, Roger G. Rank, Ashlesh K. Murthy, Jared R. Widder, Kyle H. Ramsey

Pathog Dis. 2015 Feb; 73(1): 1–12. Published online 2015 Jan 29. doi: 10.1093/femspd/ftv003

PMCID:: PMC4399565

Abstract Article PDF–1.1M

Select item 439906815.

In Vitro Passage Selects for Chlamydia muridarum with Enhanced Infectivity in Cultured Cells but Attenuated Pathogenicity in Mouse Upper Genital Tract

Chaoqun Chen, Zhou Zhou, Turner Conrad, Zhangsheng Yang, Jin Dai, Zhongyu Li, Yimou Wu, Guangming Zhong

Infect Immun. 2015 May; 83(5): 1881–1892. Prepublished online 2015 Feb 23. Published online 2015 Apr 15. doi: 10.1128/IAI.03158-14

PMCID:: PMC4399068

Abstract Article PDF–1.3M

Select item 425398316.

CAR: contig assembly of prokaryotic draft genomes using rearrangements

Chin Lung Lu, Kun-Tze Chen, Shih-Yuan Huang, Hsien-Tai Chiu

BMC Bioinformatics. 2014; 15(1): 381. Published online 2014 Nov 28. doi: 10.1186/s12859-014-0381-3

PMCID:: PMC4253983

Abstract Article PDF–2.0M

Select item 416870217.

Assembly-free genome comparison based on next-generation sequencing reads and variable length patterns

Matteo Comin, Michele Schimd

BMC Bioinformatics. 2014; 15(Suppl 9): S1. Published online 2014 Sep 10. doi: 10.1186/1471-2105-15-S9-S1

PMCID:: PMC4168702

Abstract Article PDF–676K

Select item 413708918.

Comparative genomics of koala, cattle and sheep strains of Chlamydia pecorum

Nathan L Bachmann, Tamieka A Fraser, Claire Bertelli, Martina Jelocnik, Amber Gillett, Oliver Funnell, Cheyne Flanagan, Garry S A Myers, Peter Timms, Adam Polkinghorne

BMC Genomics. 2014; 15(1): 667. Published online 2014 Aug 8. doi: 10.1186/1471-2164-15-667

PMCID:: PMC4137089

Abstract Article PDF–1.2M

Select item 413563619.

Benzylidene Acylhydrazides Inhibit Chlamydial Growth in a Type III Secretion- and Iron Chelation-Independent Manner

Xiaofeng Bao, Åsa Gylfe, Gail L. Sturdevant, Zheng Gong, Shuang Xu, Harlan D. Caldwell, Mikael Elofsson, Huizhou Fan

J Bacteriol. 2014 Aug; 196(16): 2989–3001. doi: 10.1128/JB.01677-14

PMCID:: PMC4135636

Abstract Article PDF–2.1M

Select item 407348920.

Early MicroRNA Expression Profile as a Prognostic Biomarker for the Development of Pelvic Inflammatory Disease in a Mouse Model of Chlamydial Genital Infection

Laxmi Yeruva, Garry S. A. Myers, Nicole Spencer, Heather Huot Creasy, Nancy E. Adams, Anthony T. Maurelli, Grant R. McChesney, Mario A. Cleves, Jacques Ravel, Anne Bowlin, Roger G. Rank

mBio. 2014 May-Jun; 5(3): e01241-14. Published online 2014 Jun 24. doi: 10.1128/mBio.01241-14